Wall clock time and date at job start Mon Mar 30 2020 06:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.53002 * 109.47454 * 120.00008 * 2 1 3 5 5 N 1.46906 * 109.47053 * 300.00316 * 4 2 1 6 6 C 1.46895 * 110.99789 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.47035 * 179.97438 * 6 5 4 8 8 C 1.50692 * 109.47453 * 180.02562 * 7 6 5 9 9 H 1.08004 * 120.00058 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00172 * 180.02562 * 8 7 6 11 11 N 1.31506 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99709 * 179.97438 * 10 8 7 13 13 H 1.48509 * 109.46994 * 90.00346 * 12 10 8 14 14 H 1.48504 * 109.46919 * 209.99932 * 12 10 8 15 15 H 1.48494 * 109.47546 * 329.99868 * 12 10 8 16 16 C 1.50696 * 109.47300 * 240.00169 * 2 1 3 17 17 C 1.38650 * 120.79205 * 239.72085 * 16 2 1 18 18 C 1.38200 * 119.16490 * 179.80086 * 17 16 2 19 19 N 1.31870 * 120.76232 * 0.47716 * 18 17 16 20 20 C 1.31867 * 121.72627 * 359.74751 * 19 18 17 21 21 C 1.38205 * 120.76703 * 0.02562 * 20 19 18 22 22 H 1.09002 * 109.47067 * 299.99853 * 1 2 3 23 23 H 1.09000 * 109.47312 * 59.99880 * 1 2 3 24 24 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47140 * 300.00226 * 3 2 1 27 27 H 1.09002 * 109.47045 * 60.00133 * 3 2 1 28 28 H 1.08992 * 109.47056 * 179.97438 * 4 2 1 29 29 H 1.09004 * 109.47006 * 60.00102 * 4 2 1 30 30 H 1.00899 * 110.99484 * 303.95475 * 5 4 2 31 31 H 1.08996 * 109.47424 * 299.99656 * 6 5 4 32 32 H 1.09002 * 109.47411 * 60.00282 * 6 5 4 33 33 H 1.09007 * 109.47219 * 300.00436 * 7 6 5 34 34 H 1.09005 * 109.47157 * 59.99991 * 7 6 5 35 35 H 0.96998 * 119.99843 * 180.02562 * 11 10 8 36 36 H 1.07999 * 120.41707 * 359.97438 * 17 16 2 37 37 H 1.08006 * 119.62157 * 180.20825 * 18 17 16 38 38 H 1.08002 * 119.61593 * 179.97438 * 20 19 18 39 39 H 1.07996 * 120.41956 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.5504 -0.0288 2.4487 6 6 2.0210 -0.6952 3.6703 7 6 1.4924 0.0533 4.8956 8 6 1.9757 -0.6300 6.1488 9 1 2.5980 -1.5099 6.0784 10 6 1.6234 -0.1318 7.3852 11 7 0.8653 0.9393 7.4709 12 14 2.2219 -0.9793 8.9386 13 1 3.5240 -0.3958 9.3505 14 1 1.2268 -0.7844 10.0235 15 1 2.3907 -2.4312 8.6768 16 6 2.0324 -0.7103 -1.2304 17 6 2.8352 -1.8356 -1.1223 18 6 3.2736 -2.4632 -2.2729 19 7 2.9446 -1.9980 -3.4622 20 6 2.1868 -0.9280 -3.6029 21 6 1.7075 -0.2508 -2.4976 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4426 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 -0.7216 1.2489 29 1 1.6768 -1.7490 1.2492 30 1 1.8198 0.9436 2.4401 31 1 1.6572 -1.7226 3.6869 32 1 3.1109 -0.6954 3.6873 33 1 1.8565 1.0806 4.8788 34 1 0.4025 0.0538 4.8788 35 1 0.6178 1.2900 8.3407 36 1 3.1121 -2.2185 -0.1512 37 1 3.8966 -3.3422 -2.1973 38 1 1.9386 -0.5763 -4.5934 39 1 1.0876 0.6251 -2.6194 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258915952.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:11 Heat of formation + Delta-G solvation = -3.840243 kcal Electronic energy + Delta-G solvation = -17577.354201 eV Core-core repulsion = 14904.196328 eV Total energy + Delta-G solvation = -2673.157872 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.41602 -38.84659 -36.36889 -34.67776 -32.23885 -32.15522 -30.74580 -28.15542 -27.31945 -25.66627 -24.35962 -23.59379 -22.44469 -20.27818 -18.50768 -17.79921 -17.26976 -16.72297 -16.46461 -16.26786 -15.52479 -15.33495 -15.07864 -14.55715 -14.51811 -14.41218 -14.07646 -13.84403 -13.43591 -12.95046 -12.88870 -12.75627 -12.67331 -12.47951 -12.17264 -12.09507 -11.85265 -11.60612 -11.35906 -11.17494 -10.56369 -10.43789 -10.36706 -10.04333 -9.25859 -8.20541 -6.31787 0.24451 0.33712 1.40425 1.41755 1.52910 2.40355 2.90571 3.13084 3.22518 3.59973 3.63991 3.78866 4.00529 4.16684 4.18831 4.28404 4.30049 4.50696 4.55825 4.71237 4.72973 4.77124 4.84102 4.90644 4.94032 5.02819 5.03333 5.07529 5.15463 5.33779 5.44055 5.46855 5.53760 5.68187 5.78580 5.82274 6.13411 6.27434 6.54706 6.85657 7.06379 7.37528 8.91537 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.045301 B = 0.003710 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.935606 B = 7545.356112 C = 7959.602502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.018 4.018 3 C -0.140 4.140 4 C 0.069 3.931 5 N -0.690 5.690 6 C 0.084 3.916 7 C 0.033 3.967 8 C -0.546 4.546 9 H 0.059 0.941 10 C 0.001 3.999 11 N -0.931 5.931 12 Si 0.966 3.034 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.263 1.263 16 C -0.028 4.028 17 C -0.185 4.185 18 C 0.090 3.910 19 N -0.517 5.517 20 C 0.090 3.910 21 C -0.167 4.167 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.030 0.970 29 H 0.068 0.932 30 H 0.339 0.661 31 H 0.056 0.944 32 H 0.017 0.983 33 H -0.008 1.008 34 H -0.005 1.005 35 H 0.264 0.736 36 H 0.139 0.861 37 H 0.171 0.829 38 H 0.178 0.822 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.584 -1.948 -20.403 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.018 4.018 3 C -0.197 4.197 4 C -0.060 4.060 5 N -0.322 5.322 6 C -0.045 4.045 7 C -0.005 4.005 8 C -0.584 4.584 9 H 0.078 0.922 10 C -0.197 4.197 11 N -0.571 5.571 12 Si 0.790 3.210 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.188 1.188 16 C -0.036 4.036 17 C -0.204 4.204 18 C -0.066 4.066 19 N -0.227 5.227 20 C -0.066 4.066 21 C -0.186 4.186 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.048 0.952 29 H 0.086 0.914 30 H 0.159 0.841 31 H 0.075 0.925 32 H 0.036 0.964 33 H 0.010 0.990 34 H 0.014 0.986 35 H 0.073 0.927 36 H 0.157 0.843 37 H 0.188 0.812 38 H 0.195 0.805 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.203 -2.598 -21.030 21.304 hybrid contribution 0.783 0.402 1.912 2.105 sum 2.986 -2.196 -19.118 19.474 Atomic orbital electron populations 1.21717 0.92305 1.01696 1.02490 1.19470 0.96892 0.95382 0.90096 1.21901 1.00759 0.93899 1.03186 1.22068 0.96640 0.98061 0.89197 1.60508 1.63908 1.06470 1.01282 1.21765 0.95781 0.97834 0.89130 1.18907 0.95215 0.94412 0.91937 1.21625 1.31762 1.12754 0.92281 0.92234 1.25958 0.95123 0.95688 1.02910 1.70098 1.37570 1.23928 1.25485 0.85441 0.78103 0.79155 0.78297 1.19728 1.20731 1.18771 1.20384 0.93982 0.94067 0.95212 1.22323 0.99904 0.97230 1.00986 1.23054 0.97060 0.99207 0.87282 1.67695 1.13599 1.13762 1.27658 1.23181 0.92598 0.90656 1.00171 1.22188 1.02016 1.02317 0.92103 0.91901 0.91240 0.93633 0.92957 0.90427 0.91861 0.95178 0.91378 0.84148 0.92511 0.96446 0.99011 0.98630 0.92736 0.84281 0.81202 0.80466 0.82810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.74 8.14 71.98 0.59 -2.16 16 2 C -0.02 -0.39 0.68 -52.93 -0.04 -0.43 16 3 C -0.14 -2.77 7.97 71.98 0.57 -2.20 16 4 C 0.07 1.86 3.33 86.30 0.29 2.14 16 5 N -0.69 -23.26 5.71 -513.88 -2.94 -26.19 16 6 C 0.08 3.47 5.62 86.31 0.49 3.96 16 7 C 0.03 1.74 5.23 29.85 0.16 1.89 16 8 C -0.55 -31.14 9.11 25.60 0.23 -30.91 16 9 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 10 C 0.00 0.07 5.46 84.66 0.46 0.54 16 11 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 12 Si 0.97 44.16 29.54 68.60 2.03 46.19 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 14 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 15 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 16 C -0.03 -0.57 4.77 -19.67 -0.09 -0.66 16 17 C -0.18 -3.84 9.05 22.36 0.20 -3.63 16 18 C 0.09 1.83 11.18 84.68 0.95 2.77 16 19 N -0.52 -11.38 10.36 -195.84 -2.03 -13.41 16 20 C 0.09 1.61 11.18 84.68 0.95 2.56 16 21 C -0.17 -2.88 8.84 22.36 0.20 -2.68 16 22 H 0.06 1.61 7.60 -2.39 -0.02 1.60 16 23 H 0.07 1.21 7.48 -2.39 -0.02 1.19 16 24 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 25 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.08 1.23 7.48 -2.39 -0.02 1.21 16 27 H 0.06 1.37 6.57 -2.39 -0.02 1.35 16 28 H 0.03 0.79 7.55 -2.39 -0.02 0.77 16 29 H 0.07 1.86 7.57 -2.38 -0.02 1.84 16 30 H 0.34 11.12 6.77 -89.69 -0.61 10.51 16 31 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 33 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 34 H 0.00 -0.28 8.14 -2.38 -0.02 -0.30 16 35 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 36 H 0.14 2.75 6.07 -2.91 -0.02 2.73 16 37 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 38 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16 39 H 0.15 1.93 7.28 -2.91 -0.02 1.91 16 Total: -1.00 -65.73 316.18 2.71 -63.02 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.41 Total: 15.61 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: 4.95 Total: -28.80 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -4.68 Total: -96.02 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -65.73 2.71 -63.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258915952.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.180 kcal (2) G-P(sol) polarization free energy of solvation -65.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds