Wall clock time and date at job start Mon Mar 30 2020 06:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46902 * 109.46626 * 299.99665 * 4 2 1 6 6 C 1.46905 * 110.99410 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.46844 * 180.02562 * 6 5 4 8 8 C 1.50695 * 109.47242 * 180.02562 * 7 6 5 9 9 H 1.08002 * 120.00027 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00507 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99635 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00679 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.46656 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47305 * 119.99675 * 12 10 8 15 15 H 1.48492 * 109.47311 * 240.00019 * 12 10 8 16 16 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 17 17 C 1.38223 * 119.61896 * 45.00201 * 16 2 1 18 18 C 1.38637 * 119.16474 * 179.97438 * 17 16 2 19 19 C 1.38676 * 118.41696 * 359.97438 * 18 17 16 20 20 C 1.38184 * 119.16331 * 359.97438 * 19 18 17 21 21 N 1.31857 * 119.62122 * 224.72706 * 16 2 1 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 26 26 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 28 28 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 29 29 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 30 30 H 1.00899 * 110.99966 * 303.95023 * 5 4 2 31 31 H 1.09002 * 109.47289 * 300.00021 * 6 5 4 32 32 H 1.09001 * 109.47046 * 60.00288 * 6 5 4 33 33 H 1.09002 * 109.47089 * 300.00014 * 7 6 5 34 34 H 1.09001 * 109.47170 * 60.00234 * 7 6 5 35 35 H 0.96997 * 120.00415 * 180.02562 * 11 10 8 36 36 H 1.07997 * 120.41770 * 359.95530 * 17 16 2 37 37 H 1.07994 * 120.78851 * 180.02562 * 18 17 16 38 38 H 1.07994 * 120.41615 * 180.02562 * 19 18 17 39 39 H 1.07996 * 119.61370 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.5503 -0.0288 2.4487 6 6 2.0219 -0.6947 3.6703 7 6 1.4923 0.0532 4.8955 8 6 1.9765 -0.6295 6.1487 9 1 2.5993 -1.5090 6.0784 10 6 1.6236 -0.1319 7.3852 11 7 0.8648 0.9389 7.4709 12 14 2.2244 -0.9776 8.9387 13 1 3.0569 -2.1515 8.5727 14 1 3.0355 -0.0251 9.7388 15 1 1.0580 -1.4287 9.7394 16 6 2.0323 -0.7104 -1.2305 17 6 1.4589 -0.4382 -2.4584 18 6 1.9287 -1.0967 -3.5842 19 6 2.9627 -2.0082 -3.4322 20 6 3.4871 -2.2279 -2.1728 21 7 3.0173 -1.5805 -1.1242 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6768 1.9562 0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 -1.7489 1.2492 29 1 3.1300 -0.7217 1.2490 30 1 1.8199 0.9435 2.4401 31 1 1.6588 -1.7223 3.6873 32 1 3.1118 -0.6941 3.6868 33 1 1.8551 1.0809 4.8787 34 1 0.4024 0.0522 4.8788 35 1 0.6168 1.2893 8.3407 36 1 0.6549 0.2783 -2.5396 37 1 1.5002 -0.9038 -4.5566 38 1 3.3538 -2.5391 -4.2876 39 1 4.2927 -2.9358 -2.0461 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259000430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:07 Heat of formation + Delta-G solvation = 17.397079 kcal Electronic energy + Delta-G solvation = -17581.493637 eV Core-core repulsion = 14909.256683 eV Total energy + Delta-G solvation = -2672.236953 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.57218 -37.39641 -34.53738 -32.63102 -32.56776 -30.39026 -28.91317 -27.18617 -25.69229 -24.05977 -23.43499 -22.52882 -20.47548 -19.27056 -16.97978 -16.35642 -16.21325 -15.53884 -15.08189 -14.63915 -14.41798 -14.33165 -13.72457 -13.35607 -13.16056 -12.92147 -12.68416 -12.11483 -12.09510 -11.95514 -11.57862 -11.11091 -11.04815 -10.90420 -10.84181 -10.58759 -10.44291 -10.00762 -9.89972 -9.48210 -9.23999 -9.08395 -9.04163 -8.30397 -7.65885 -5.95138 -3.97000 0.98919 1.15785 3.34569 3.41726 3.46407 3.68623 4.14057 4.43051 4.52809 4.68362 4.87806 4.95523 5.06876 5.11092 5.16748 5.22463 5.40917 5.50290 5.63208 5.71475 5.85211 5.92389 5.97717 6.01475 6.12320 6.13465 6.29464 6.41446 6.46809 6.52340 6.57429 6.63004 7.07749 7.58408 7.80858 7.90738 7.94271 8.07047 8.16133 8.50579 9.10704 9.66506 11.16414 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.045422 B = 0.003732 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.296112 B = 7501.505085 C = 7899.555608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.015 4.015 3 C -0.140 4.140 4 C 0.082 3.918 5 N -0.692 5.692 6 C 0.067 3.933 7 C 0.025 3.975 8 C -0.519 4.519 9 H 0.054 0.946 10 C 0.057 3.943 11 N -0.894 5.894 12 Si 0.892 3.108 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.150 3.850 17 C -0.169 4.169 18 C -0.076 4.076 19 C -0.186 4.186 20 C 0.100 3.900 21 N -0.478 5.478 22 H 0.047 0.953 23 H 0.082 0.918 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.034 0.966 30 H 0.333 0.667 31 H 0.057 0.943 32 H 0.014 0.986 33 H 0.013 0.987 34 H 0.025 0.975 35 H 0.259 0.741 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.947 -2.093 -23.028 23.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.017 4.017 3 C -0.198 4.198 4 C -0.047 4.047 5 N -0.324 5.324 6 C -0.061 4.061 7 C -0.012 4.012 8 C -0.558 4.558 9 H 0.073 0.927 10 C -0.144 4.144 11 N -0.534 5.534 12 Si 0.720 3.280 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.210 1.210 16 C 0.012 3.988 17 C -0.189 4.189 18 C -0.102 4.102 19 C -0.206 4.206 20 C -0.057 4.057 21 N -0.186 5.186 22 H 0.066 0.934 23 H 0.101 0.899 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.052 0.948 30 H 0.151 0.849 31 H 0.075 0.925 32 H 0.032 0.968 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.069 0.931 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.635 -2.480 -22.075 22.274 hybrid contribution 0.945 -0.112 -0.073 0.954 sum 2.580 -2.592 -22.149 22.448 Atomic orbital electron populations 1.21816 0.92475 1.02163 1.02340 1.19560 0.96467 0.94647 0.90996 1.21889 1.00984 0.94333 1.02554 1.21715 0.97219 0.97530 0.88279 1.60668 1.63812 1.06106 1.01798 1.22119 0.96019 0.98508 0.89462 1.19069 0.97155 0.95034 0.89945 1.21244 1.31222 1.12288 0.91045 0.92727 1.25004 0.95220 0.95079 0.99126 1.69984 1.36668 1.22501 1.24212 0.86540 0.78559 0.79557 0.83370 1.19768 1.21070 1.21018 1.21342 0.90826 0.92243 0.94413 1.21960 1.01955 1.01863 0.93114 1.21561 0.95230 0.94577 0.98878 1.22101 0.98808 1.00520 0.99148 1.22792 0.97997 0.96738 0.88159 1.67569 1.10939 1.06768 1.33338 0.93404 0.89896 0.92858 0.90746 0.92772 0.92621 0.91504 0.94793 0.84883 0.92496 0.96757 0.96893 0.95678 0.93116 0.84742 0.85083 0.85118 0.82936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 7.93 37.16 0.29 -1.32 16 2 C -0.02 -0.20 0.69 -155.66 -0.11 -0.31 16 3 C -0.14 -1.66 8.08 37.15 0.30 -1.36 16 4 C 0.08 1.33 3.98 -3.82 -0.02 1.32 16 5 N -0.69 -12.74 5.71 -113.77 -0.65 -13.39 16 6 C 0.07 1.48 5.62 -3.82 -0.02 1.46 16 7 C 0.03 0.68 5.23 -27.89 -0.15 0.53 16 8 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 9 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 10 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 11 N -0.89 -27.34 13.29 55.43 0.74 -26.61 16 12 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 13 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 16 C 0.15 1.91 5.56 -82.59 -0.46 1.45 16 17 C -0.17 -1.74 9.08 -39.44 -0.36 -2.10 16 18 C -0.08 -0.67 10.18 -39.27 -0.40 -1.07 16 19 C -0.19 -1.62 10.11 -39.44 -0.40 -2.02 16 20 C 0.10 1.07 11.18 -17.55 -0.20 0.88 16 21 N -0.48 -6.50 9.03 -9.48 -0.09 -6.58 16 22 H 0.05 0.48 6.70 -51.93 -0.35 0.13 16 23 H 0.08 1.14 7.60 -51.93 -0.39 0.74 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.91 6.57 -51.93 -0.34 0.57 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.56 8.09 -51.93 -0.42 0.14 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.03 0.58 7.85 -51.93 -0.41 0.18 16 30 H 0.33 5.87 6.77 -39.29 -0.27 5.60 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.13 1.14 6.73 -52.49 -0.35 0.79 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 318.63 15.07 4.80 4.80 Total: -1.00 -31.84 318.63 -8.44 -40.28 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.30 Total: 0.85 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -1.92 Total: -16.40 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.00 Total: -46.58 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.84 -8.44 -40.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259000430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.675 kcal (2) G-P(sol) polarization free energy of solvation -31.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds