Wall clock time and date at job start Mon Mar 30 2020 06:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46902 * 109.46626 * 299.99665 * 4 2 1 6 6 C 1.46905 * 110.99410 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.46844 * 180.02562 * 6 5 4 8 8 C 1.50695 * 109.47242 * 180.02562 * 7 6 5 9 9 H 1.08002 * 120.00027 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00507 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99635 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00679 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.46656 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47305 * 119.99675 * 12 10 8 15 15 H 1.48492 * 109.47311 * 240.00019 * 12 10 8 16 16 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 17 17 C 1.38223 * 119.61896 * 45.00201 * 16 2 1 18 18 C 1.38637 * 119.16474 * 179.97438 * 17 16 2 19 19 C 1.38676 * 118.41696 * 359.97438 * 18 17 16 20 20 C 1.38184 * 119.16331 * 359.97438 * 19 18 17 21 21 N 1.31857 * 119.62122 * 224.72706 * 16 2 1 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 26 26 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 28 28 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 29 29 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 30 30 H 1.00899 * 110.99966 * 303.95023 * 5 4 2 31 31 H 1.09002 * 109.47289 * 300.00021 * 6 5 4 32 32 H 1.09001 * 109.47046 * 60.00288 * 6 5 4 33 33 H 1.09002 * 109.47089 * 300.00014 * 7 6 5 34 34 H 1.09001 * 109.47170 * 60.00234 * 7 6 5 35 35 H 0.96997 * 120.00415 * 180.02562 * 11 10 8 36 36 H 1.07997 * 120.41770 * 359.95530 * 17 16 2 37 37 H 1.07994 * 120.78851 * 180.02562 * 18 17 16 38 38 H 1.07994 * 120.41615 * 180.02562 * 19 18 17 39 39 H 1.07996 * 119.61370 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.5503 -0.0288 2.4487 6 6 2.0219 -0.6947 3.6703 7 6 1.4923 0.0532 4.8955 8 6 1.9765 -0.6295 6.1487 9 1 2.5993 -1.5090 6.0784 10 6 1.6236 -0.1319 7.3852 11 7 0.8648 0.9389 7.4709 12 14 2.2244 -0.9776 8.9387 13 1 3.0569 -2.1515 8.5727 14 1 3.0355 -0.0251 9.7388 15 1 1.0580 -1.4287 9.7394 16 6 2.0323 -0.7104 -1.2305 17 6 1.4589 -0.4382 -2.4584 18 6 1.9287 -1.0967 -3.5842 19 6 2.9627 -2.0082 -3.4322 20 6 3.4871 -2.2279 -2.1728 21 7 3.0173 -1.5805 -1.1242 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6768 1.9562 0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 -1.7489 1.2492 29 1 3.1300 -0.7217 1.2490 30 1 1.8199 0.9435 2.4401 31 1 1.6588 -1.7223 3.6873 32 1 3.1118 -0.6941 3.6868 33 1 1.8551 1.0809 4.8787 34 1 0.4024 0.0522 4.8788 35 1 0.6168 1.2893 8.3407 36 1 0.6549 0.2783 -2.5396 37 1 1.5002 -0.9038 -4.5566 38 1 3.3538 -2.5391 -4.2876 39 1 4.2927 -2.9358 -2.0461 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259000430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:07 Heat of formation + Delta-G solvation = -2.516488 kcal Electronic energy + Delta-G solvation = -17582.357154 eV Core-core repulsion = 14909.256683 eV Total energy + Delta-G solvation = -2673.100470 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.40570 -38.60584 -36.19804 -34.57467 -33.36347 -31.60832 -30.48710 -28.16609 -27.23620 -25.59721 -24.28167 -23.69861 -22.43426 -20.29488 -18.49707 -17.75568 -17.31354 -16.63792 -16.45494 -16.29907 -15.57094 -15.46400 -14.99098 -14.60510 -14.37475 -14.10989 -14.05045 -13.74710 -13.35334 -13.07607 -12.90344 -12.82041 -12.56108 -12.46244 -12.10706 -12.06141 -11.81853 -11.67844 -11.36760 -11.20670 -10.76038 -10.56615 -10.24161 -9.83739 -9.24910 -8.20360 -6.31640 0.22878 0.43712 1.39990 1.40631 1.54185 2.40688 2.90397 3.12766 3.24638 3.36082 3.85904 4.00816 4.03700 4.14189 4.22568 4.31076 4.34396 4.50422 4.57598 4.71414 4.77098 4.81979 4.86062 4.88642 5.03787 5.04174 5.07348 5.12439 5.28139 5.32395 5.37880 5.44524 5.51492 5.68227 5.78379 5.86559 6.14089 6.27957 6.56975 6.85119 7.15042 7.37326 8.92004 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.045422 B = 0.003732 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.296112 B = 7501.505085 C = 7899.555608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.010 4.010 3 C -0.136 4.136 4 C 0.091 3.909 5 N -0.689 5.689 6 C 0.084 3.916 7 C 0.035 3.965 8 C -0.546 4.546 9 H 0.057 0.943 10 C 0.001 3.999 11 N -0.930 5.930 12 Si 0.968 3.032 13 H -0.264 1.264 14 H -0.276 1.276 15 H -0.276 1.276 16 C 0.125 3.875 17 C -0.171 4.171 18 C -0.075 4.075 19 C -0.177 4.177 20 C 0.080 3.920 21 N -0.518 5.518 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.043 0.957 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.022 0.978 30 H 0.338 0.662 31 H 0.052 0.948 32 H 0.012 0.988 33 H -0.007 1.007 34 H -0.003 1.003 35 H 0.264 0.736 36 H 0.153 0.847 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.199 -2.570 -24.781 25.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.011 4.011 3 C -0.194 4.194 4 C -0.038 4.038 5 N -0.321 5.321 6 C -0.045 4.045 7 C -0.003 4.003 8 C -0.585 4.585 9 H 0.075 0.925 10 C -0.197 4.197 11 N -0.570 5.570 12 Si 0.792 3.208 13 H -0.188 1.188 14 H -0.201 1.201 15 H -0.202 1.202 16 C -0.013 4.013 17 C -0.191 4.191 18 C -0.101 4.101 19 C -0.197 4.197 20 C -0.077 4.077 21 N -0.228 5.228 22 H 0.096 0.904 23 H 0.084 0.916 24 H 0.062 0.938 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.040 0.960 30 H 0.157 0.843 31 H 0.070 0.930 32 H 0.031 0.969 33 H 0.011 0.989 34 H 0.016 0.984 35 H 0.073 0.927 36 H 0.171 0.829 37 H 0.183 0.817 38 H 0.180 0.820 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 1.889 -2.955 -23.849 24.106 hybrid contribution 0.871 0.025 0.378 0.950 sum 2.760 -2.930 -23.472 23.814 Atomic orbital electron populations 1.21762 0.91889 1.01692 1.02922 1.19466 0.96853 0.94982 0.89849 1.21857 1.00392 0.93754 1.03357 1.21635 0.96392 0.96994 0.88776 1.60582 1.63730 1.06388 1.01365 1.21751 0.95540 0.97753 0.89418 1.18899 0.95261 0.94397 0.91724 1.21641 1.31727 1.12749 0.92340 0.92482 1.25966 0.95117 0.95691 1.02885 1.70108 1.37567 1.23876 1.25459 0.85364 0.78267 0.78625 0.78563 1.18809 1.20147 1.20186 1.21259 0.91888 0.93257 0.94922 1.22163 1.02114 1.02223 0.92577 1.22006 0.94706 0.93568 0.99805 1.22467 0.98073 0.99920 0.99200 1.23172 0.98753 0.97086 0.88647 1.67464 1.12058 1.07982 1.35253 0.90438 0.91633 0.93824 0.91476 0.93655 0.90211 0.93046 0.95999 0.84259 0.92962 0.96936 0.98858 0.98437 0.92679 0.82913 0.81683 0.81956 0.81527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 7.93 71.98 0.57 -2.44 16 2 C -0.01 -0.27 0.69 -52.93 -0.04 -0.30 16 3 C -0.14 -3.16 8.08 71.98 0.58 -2.57 16 4 C 0.09 3.05 3.98 86.31 0.34 3.40 16 5 N -0.69 -26.23 5.71 -513.86 -2.94 -29.17 16 6 C 0.08 3.86 5.62 86.30 0.49 4.34 16 7 C 0.03 1.93 5.23 29.85 0.16 2.08 16 8 C -0.55 -32.40 9.11 25.60 0.23 -32.17 16 9 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 10 C 0.00 0.08 5.46 84.65 0.46 0.55 16 11 N -0.93 -57.73 13.29 21.45 0.28 -57.45 16 12 Si 0.97 45.38 29.54 68.60 2.03 47.41 16 13 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 14 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 16 C 0.12 3.06 5.56 42.55 0.24 3.30 16 17 C -0.17 -3.09 9.08 22.36 0.20 -2.89 16 18 C -0.08 -1.05 10.18 22.47 0.23 -0.82 16 19 C -0.18 -2.57 10.11 22.36 0.23 -2.35 16 20 C 0.08 1.62 11.18 84.67 0.95 2.56 16 21 N -0.52 -14.01 9.03 -183.89 -1.66 -15.67 16 22 H 0.08 1.38 6.70 -2.39 -0.02 1.36 16 23 H 0.06 1.80 7.60 -2.39 -0.02 1.78 16 24 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.07 1.63 6.57 -2.39 -0.02 1.61 16 26 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.08 1.45 8.09 -2.39 -0.02 1.43 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.02 0.78 7.85 -2.39 -0.02 0.76 16 30 H 0.34 12.34 6.77 -89.70 -0.61 11.73 16 31 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 33 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 34 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 36 H 0.15 2.07 6.73 -2.91 -0.02 2.05 16 37 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 38 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 39 H 0.17 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -69.97 318.63 2.76 -67.21 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.41 Total: 14.98 kcal Atomic # 6 Polarization: -31.94 SS G_CDS: 4.64 Total: -27.31 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -4.31 Total: -102.29 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -69.97 2.76 -67.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259000430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.691 kcal (2) G-P(sol) polarization free energy of solvation -69.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds