Wall clock time and date at job start Mon Mar 30 2020 06:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47053 * 2 1 4 4 C 1.52996 * 109.47574 * 239.99510 * 2 1 3 5 5 C 1.50706 * 109.46761 * 119.99826 * 2 1 3 6 6 N 1.30748 * 125.61236 * 254.97719 * 5 2 1 7 7 C 1.33584 * 109.14669 * 180.02562 * 6 5 2 8 8 C 1.35026 * 107.97458 * 359.94003 * 7 6 5 9 9 N 1.35307 * 125.61575 * 74.99926 * 5 2 1 10 10 H 0.97004 * 126.50064 * 0.04313 * 9 5 2 11 11 C 1.50650 * 124.45287 * 180.08180 * 8 7 6 12 12 C 1.53407 * 108.38478 * 16.39697 * 11 8 7 13 13 C 1.53114 * 109.44437 * 310.36112 * 12 11 8 14 14 H 1.09001 * 109.46150 * 309.99264 * 13 12 11 15 15 C 1.50697 * 109.46176 * 190.02951 * 13 12 11 16 16 H 1.08008 * 120.00033 * 359.97438 * 15 13 12 17 17 C 1.37879 * 120.00224 * 179.97438 * 15 13 12 18 18 N 1.31514 * 120.00124 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 119.99966 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47229 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47200 * 120.00223 * 19 17 15 22 22 H 1.48500 * 109.46851 * 239.99975 * 19 17 15 23 23 C 1.50862 * 128.03424 * 179.84142 * 7 6 5 24 24 H 1.08995 * 109.47384 * 300.00253 * 1 2 3 25 25 H 1.08997 * 109.46355 * 60.00267 * 1 2 3 26 26 H 1.09000 * 109.47069 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46730 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.46890 * 299.99413 * 3 2 1 29 29 H 1.08995 * 109.47232 * 59.99654 * 3 2 1 30 30 H 1.08996 * 109.47173 * 300.00826 * 4 2 1 31 31 H 1.09007 * 109.46998 * 59.99914 * 4 2 1 32 32 H 1.09000 * 109.47474 * 180.02562 * 4 2 1 33 33 H 1.09006 * 109.68309 * 256.67626 * 11 8 7 34 34 H 1.08998 * 109.68775 * 136.11953 * 11 8 7 35 35 H 1.09008 * 109.46872 * 70.35092 * 12 11 8 36 36 H 1.08999 * 109.47781 * 190.36343 * 12 11 8 37 37 H 0.96996 * 120.00298 * 179.97438 * 18 17 15 38 38 H 1.08998 * 109.67520 * 316.48846 * 23 7 6 39 39 H 1.09003 * 109.67305 * 76.99184 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7104 1.2306 6 7 2.5458 -0.1343 2.2860 7 6 2.8807 -1.0713 3.1773 8 6 2.5618 -2.2753 2.6559 9 7 2.0265 -2.0494 1.4249 10 1 1.7025 -2.7211 0.8046 11 6 2.7815 -3.5918 3.3545 12 6 3.0176 -3.3152 4.8448 13 6 4.0814 -2.2247 4.9986 14 1 4.9505 -2.4769 4.3911 15 6 4.4922 -2.1244 6.4450 16 1 4.0400 -2.7728 7.1811 17 6 5.4453 -1.2050 6.8289 18 7 5.9956 -0.4152 5.9328 19 14 5.9550 -1.0813 8.6217 20 1 5.1927 -2.0724 9.4226 21 1 7.4087 -1.3587 8.7434 22 1 5.6683 0.2863 9.1245 23 6 3.5074 -0.8798 4.5362 24 1 -0.3634 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9562 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6768 -1.7489 -1.2491 31 1 1.6768 -0.2075 -2.1392 32 1 3.1301 -0.7217 -1.2489 33 1 3.6532 -4.0911 2.9312 34 1 1.9014 -4.2232 3.2333 35 1 2.0869 -2.9825 5.3045 36 1 3.3589 -4.2274 5.3342 37 1 6.6658 0.2319 6.2029 38 1 4.3075 -0.1426 4.4708 39 1 2.7516 -0.5395 5.2441 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259592127.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:54 Heat of formation + Delta-G solvation = 21.655919 kcal Electronic energy + Delta-G solvation = -18459.172375 eV Core-core repulsion = 15787.120099 eV Total energy + Delta-G solvation = -2672.052276 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.73168 -36.99159 -35.44790 -32.62524 -32.10985 -28.76070 -28.03129 -27.35841 -27.01782 -24.69162 -22.73228 -21.53204 -20.39621 -18.92251 -17.88677 -16.83001 -16.13831 -15.01223 -14.68063 -14.41277 -14.09990 -13.86394 -13.24751 -12.89317 -12.56218 -12.37146 -12.24065 -12.19792 -11.95497 -11.68352 -11.22520 -11.08501 -11.04739 -10.89981 -10.88683 -10.72901 -10.45129 -10.27134 -9.74636 -9.39666 -9.08379 -8.82340 -8.74933 -8.29642 -7.26538 -5.91321 -3.98008 2.61946 3.35190 3.43325 3.46661 3.53370 3.84206 4.49623 4.54078 4.81144 4.97559 5.21675 5.38021 5.43333 5.47081 5.62236 5.66139 5.73376 5.81610 5.88499 5.90330 5.96258 5.99464 6.14784 6.27522 6.30363 6.38404 6.53202 6.66074 6.78014 6.90261 7.12541 7.19259 7.48384 7.56859 7.82142 7.99520 8.05940 8.21558 8.50311 8.84651 9.06614 9.66866 11.14986 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.036290 B = 0.005550 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.375060 B = 5044.115426 C = 5521.180824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.023 3.977 3 C -0.126 4.126 4 C -0.143 4.143 5 C 0.189 3.811 6 N -0.478 5.478 7 C 0.032 3.968 8 C -0.043 4.043 9 N -0.564 5.564 10 H 0.406 0.594 11 C -0.037 4.037 12 C -0.104 4.104 13 C 0.052 3.948 14 H 0.027 0.973 15 C -0.515 4.515 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.889 3.111 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.026 4.026 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.260 0.740 38 H 0.098 0.902 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.346 -2.083 -13.017 16.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.021 3.979 3 C -0.184 4.184 4 C -0.201 4.201 5 C -0.073 4.073 6 N -0.198 5.198 7 C -0.098 4.098 8 C -0.156 4.156 9 N -0.167 5.167 10 H 0.243 0.757 11 C -0.075 4.075 12 C -0.142 4.142 13 C 0.033 3.967 14 H 0.046 0.954 15 C -0.554 4.554 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.525 5.525 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.065 4.065 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.116 0.884 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.076 -1.063 -12.867 15.782 hybrid contribution 0.049 -1.119 0.457 1.210 sum -9.028 -2.182 -12.411 15.501 Atomic orbital electron populations 1.21898 0.93710 1.01673 1.02396 1.18887 0.95041 0.95556 0.88458 1.21647 1.01787 0.93176 1.01753 1.21930 1.01825 0.99657 0.96721 1.22928 1.06039 0.80157 0.98127 1.69962 1.15712 1.33410 1.00695 1.21523 1.02231 0.87457 0.98592 1.21105 1.08038 0.99146 0.87341 1.42661 1.49892 1.08391 1.15767 0.75745 1.20132 0.99959 0.90418 0.97038 1.21674 1.00668 1.00628 0.91225 1.18715 0.92355 0.89302 0.96348 0.95447 1.21200 1.21772 1.19278 0.93121 0.92486 1.24992 0.96106 0.95645 0.97161 1.69925 1.27706 1.21954 1.32909 0.86583 0.78253 0.77860 0.85574 1.19831 1.21143 1.21055 1.20267 0.98462 1.02162 0.85598 0.91915 0.91901 0.93103 0.92084 0.92776 0.91317 0.93177 0.91607 0.92028 0.91555 0.92771 0.93028 0.92333 0.93036 0.88356 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.46 37.16 0.31 -1.18 16 2 C 0.02 0.29 0.99 -155.66 -0.15 0.13 16 3 C -0.13 -1.62 8.02 37.16 0.30 -1.33 16 4 C -0.14 -1.47 8.34 37.16 0.31 -1.16 16 5 C 0.19 3.26 6.43 -154.97 -1.00 2.26 16 6 N -0.48 -10.36 10.54 -6.95 -0.07 -10.43 16 7 C 0.03 0.72 6.98 -82.89 -0.58 0.14 16 8 C -0.04 -0.83 7.08 -81.85 -0.58 -1.41 16 9 N -0.56 -9.06 5.97 -6.53 -0.04 -9.10 16 10 H 0.41 4.95 8.50 -40.82 -0.35 4.61 16 11 C -0.04 -0.65 6.30 -27.70 -0.17 -0.83 16 12 C -0.10 -2.15 5.15 -26.46 -0.14 -2.29 16 13 C 0.05 1.31 2.07 -91.53 -0.19 1.12 16 14 H 0.03 0.76 8.11 -51.93 -0.42 0.34 16 15 C -0.52 -14.17 8.53 -34.44 -0.29 -14.47 16 16 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 18 N -0.89 -25.87 11.46 55.43 0.64 -25.24 16 19 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 23 C -0.03 -0.67 5.19 -27.62 -0.14 -0.81 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16 30 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 31 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 1.07 8.12 -51.92 -0.42 0.65 16 36 H 0.06 1.15 8.11 -51.93 -0.42 0.73 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.10 2.82 6.44 -51.93 -0.33 2.48 16 39 H 0.05 1.35 8.12 -51.93 -0.42 0.92 16 LS Contribution 310.13 15.07 4.67 4.67 Total: -1.00 -31.08 310.13 -8.77 -39.85 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -6.53 Total: 2.01 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -2.42 Total: -18.16 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.52 Total: -44.77 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.08 -8.77 -39.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259592127.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.505 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds