Wall clock time and date at job start Mon Mar 30 2020 06:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47053 * 2 1 4 4 C 1.52996 * 109.47574 * 239.99510 * 2 1 3 5 5 C 1.50706 * 109.46761 * 119.99826 * 2 1 3 6 6 N 1.30748 * 125.61236 * 254.97719 * 5 2 1 7 7 C 1.33584 * 109.14669 * 180.02562 * 6 5 2 8 8 C 1.35026 * 107.97458 * 359.94003 * 7 6 5 9 9 N 1.35307 * 125.61575 * 74.99926 * 5 2 1 10 10 H 0.97004 * 126.50064 * 0.04313 * 9 5 2 11 11 C 1.50650 * 124.45287 * 180.08180 * 8 7 6 12 12 C 1.53407 * 108.38478 * 16.39697 * 11 8 7 13 13 C 1.53114 * 109.44437 * 310.36112 * 12 11 8 14 14 H 1.09001 * 109.46150 * 309.99264 * 13 12 11 15 15 C 1.50697 * 109.46176 * 190.02951 * 13 12 11 16 16 H 1.08008 * 120.00033 * 359.97438 * 15 13 12 17 17 C 1.37879 * 120.00224 * 179.97438 * 15 13 12 18 18 N 1.31514 * 120.00124 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 119.99966 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47229 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47200 * 120.00223 * 19 17 15 22 22 H 1.48500 * 109.46851 * 239.99975 * 19 17 15 23 23 C 1.50862 * 128.03424 * 179.84142 * 7 6 5 24 24 H 1.08995 * 109.47384 * 300.00253 * 1 2 3 25 25 H 1.08997 * 109.46355 * 60.00267 * 1 2 3 26 26 H 1.09000 * 109.47069 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46730 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.46890 * 299.99413 * 3 2 1 29 29 H 1.08995 * 109.47232 * 59.99654 * 3 2 1 30 30 H 1.08996 * 109.47173 * 300.00826 * 4 2 1 31 31 H 1.09007 * 109.46998 * 59.99914 * 4 2 1 32 32 H 1.09000 * 109.47474 * 180.02562 * 4 2 1 33 33 H 1.09006 * 109.68309 * 256.67626 * 11 8 7 34 34 H 1.08998 * 109.68775 * 136.11953 * 11 8 7 35 35 H 1.09008 * 109.46872 * 70.35092 * 12 11 8 36 36 H 1.08999 * 109.47781 * 190.36343 * 12 11 8 37 37 H 0.96996 * 120.00298 * 179.97438 * 18 17 15 38 38 H 1.08998 * 109.67520 * 316.48846 * 23 7 6 39 39 H 1.09003 * 109.67305 * 76.99184 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7104 1.2306 6 7 2.5458 -0.1343 2.2860 7 6 2.8807 -1.0713 3.1773 8 6 2.5618 -2.2753 2.6559 9 7 2.0265 -2.0494 1.4249 10 1 1.7025 -2.7211 0.8046 11 6 2.7815 -3.5918 3.3545 12 6 3.0176 -3.3152 4.8448 13 6 4.0814 -2.2247 4.9986 14 1 4.9505 -2.4769 4.3911 15 6 4.4922 -2.1244 6.4450 16 1 4.0400 -2.7728 7.1811 17 6 5.4453 -1.2050 6.8289 18 7 5.9956 -0.4152 5.9328 19 14 5.9550 -1.0813 8.6217 20 1 5.1927 -2.0724 9.4226 21 1 7.4087 -1.3587 8.7434 22 1 5.6683 0.2863 9.1245 23 6 3.5074 -0.8798 4.5362 24 1 -0.3634 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9562 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6768 -1.7489 -1.2491 31 1 1.6768 -0.2075 -2.1392 32 1 3.1301 -0.7217 -1.2489 33 1 3.6532 -4.0911 2.9312 34 1 1.9014 -4.2232 3.2333 35 1 2.0869 -2.9825 5.3045 36 1 3.3589 -4.2274 5.3342 37 1 6.6658 0.2319 6.2029 38 1 4.3075 -0.1426 4.4708 39 1 2.7516 -0.5395 5.2441 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259592127.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:53 Heat of formation + Delta-G solvation = 3.122635 kcal Electronic energy + Delta-G solvation = -18459.976039 eV Core-core repulsion = 15787.120099 eV Total energy + Delta-G solvation = -2672.855939 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.21393 -38.35422 -36.93847 -34.40372 -33.87073 -30.54880 -29.68126 -28.16699 -28.03945 -26.65173 -24.28194 -23.03464 -22.15419 -20.17822 -19.56514 -18.47631 -17.96090 -16.55728 -16.35286 -15.83259 -15.36467 -14.86999 -14.62026 -14.59220 -14.40302 -13.95785 -13.70084 -13.16493 -13.13954 -12.94703 -12.86748 -12.60185 -12.51607 -12.43361 -12.26982 -12.09181 -11.88670 -11.85747 -11.51648 -11.19123 -10.86344 -10.68007 -10.53879 -10.39742 -8.84099 -8.05703 -6.21045 1.17296 1.42237 1.43814 1.55668 2.20981 2.24857 2.45770 3.19520 3.39009 3.86542 4.02360 4.03753 4.19659 4.25864 4.34292 4.54780 4.66299 4.73300 4.77878 4.84429 4.86331 4.97478 4.97947 4.99554 5.01758 5.05092 5.15420 5.19548 5.28236 5.40216 5.44429 5.47078 5.58691 5.68818 5.85180 6.00078 6.15194 6.38721 6.70752 6.92362 7.33999 7.48096 8.99490 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.036290 B = 0.005550 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.375060 B = 5044.115426 C = 5521.180824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.020 3.980 3 C -0.125 4.125 4 C -0.139 4.139 5 C 0.206 3.794 6 N -0.526 5.526 7 C -0.021 4.021 8 C -0.030 4.030 9 N -0.546 5.546 10 H 0.430 0.570 11 C -0.030 4.030 12 C -0.097 4.097 13 C 0.051 3.949 14 H -0.006 1.006 15 C -0.533 4.533 16 H 0.061 0.939 17 C 0.009 3.991 18 N -0.921 5.921 19 Si 0.957 3.043 20 H -0.261 1.261 21 H -0.280 1.280 22 H -0.284 1.284 23 C -0.011 4.011 24 H 0.041 0.959 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.038 0.962 28 H 0.090 0.910 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.259 0.741 38 H 0.053 0.947 39 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.177 -3.833 -14.853 18.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.017 3.983 3 C -0.183 4.183 4 C -0.197 4.197 5 C -0.058 4.058 6 N -0.246 5.246 7 C -0.149 4.149 8 C -0.146 4.146 9 N -0.150 5.150 10 H 0.271 0.729 11 C -0.068 4.068 12 C -0.136 4.136 13 C 0.032 3.968 14 H 0.012 0.988 15 C -0.571 4.571 16 H 0.079 0.921 17 C -0.189 4.189 18 N -0.560 5.560 19 Si 0.782 3.218 20 H -0.185 1.185 21 H -0.206 1.206 22 H -0.211 1.211 23 C -0.050 4.050 24 H 0.061 0.939 25 H 0.112 0.888 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -10.924 -2.848 -14.715 18.546 hybrid contribution 0.599 -0.513 0.955 1.239 sum -10.324 -3.361 -13.760 17.528 Atomic orbital electron populations 1.21877 0.91562 1.02744 1.02980 1.19205 0.96616 0.94923 0.87509 1.21651 1.00402 0.93897 1.02327 1.21924 1.00878 1.00760 0.96116 1.23824 1.03318 0.80620 0.98052 1.69857 1.17823 1.34622 1.02248 1.21179 1.05562 0.89719 0.98472 1.21182 1.06605 0.98621 0.88193 1.42517 1.48919 1.08669 1.14943 0.72915 1.20136 1.02405 0.89995 0.94256 1.21532 0.98731 0.99187 0.94099 1.18647 0.92661 0.90834 0.94677 0.98784 1.21630 1.21780 1.19216 0.94454 0.92075 1.25848 0.96279 0.95323 1.01497 1.70105 1.28263 1.22611 1.35042 0.85526 0.78000 0.77879 0.80383 1.18528 1.20614 1.21051 1.19812 0.96461 1.01126 0.87590 0.93940 0.88773 0.91795 0.94266 0.89141 0.93757 0.91374 0.88659 0.93575 0.90385 0.88385 0.93211 0.91052 0.93222 0.92828 0.95367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.46 71.98 0.61 -1.82 16 2 C 0.02 0.45 0.99 -52.92 -0.05 0.40 16 3 C -0.12 -3.11 8.02 71.98 0.58 -2.54 16 4 C -0.14 -2.31 8.34 71.98 0.60 -1.71 16 5 C 0.21 6.88 6.43 137.97 0.89 7.77 16 6 N -0.53 -23.57 10.54 -175.89 -1.85 -25.43 16 7 C -0.02 -1.00 6.98 41.60 0.29 -0.71 16 8 C -0.03 -1.15 7.08 41.14 0.29 -0.86 16 9 N -0.55 -16.27 5.97 -174.58 -1.04 -17.31 16 10 H 0.43 8.71 8.50 -92.71 -0.79 7.92 16 11 C -0.03 -0.98 6.30 29.97 0.19 -0.79 16 12 C -0.10 -3.99 5.15 30.77 0.16 -3.83 16 13 C 0.05 2.68 2.07 -11.38 -0.02 2.65 16 14 H -0.01 -0.35 8.11 -2.39 -0.02 -0.37 16 15 C -0.53 -30.21 8.53 25.60 0.22 -30.00 16 16 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 17 C 0.01 0.52 5.30 84.66 0.45 0.97 16 18 N -0.92 -56.57 11.46 21.45 0.25 -56.33 16 19 Si 0.96 45.01 29.54 68.60 2.03 47.03 16 20 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 22 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 23 C -0.01 -0.60 5.19 30.02 0.16 -0.44 16 24 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 27 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.04 1.30 8.07 -2.39 -0.02 1.28 16 30 H 0.07 0.90 7.66 -2.39 -0.02 0.88 16 31 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 34 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.05 2.03 8.12 -2.38 -0.02 2.01 16 36 H 0.07 2.71 8.11 -2.39 -0.02 2.69 16 37 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 38 H 0.05 3.35 6.44 -2.39 -0.02 3.33 16 39 H 0.03 1.58 8.12 -2.39 -0.02 1.56 16 Total: -1.00 -73.14 310.13 3.96 -69.18 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.23 Total: 13.77 kcal Atomic # 6 Polarization: -35.27 SS G_CDS: 4.35 Total: -30.92 kcal Atomic # 7 Polarization: -96.41 SS G_CDS: -2.65 Total: -99.06 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -73.14 3.96 -69.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259592127.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.300 kcal (2) G-P(sol) polarization free energy of solvation -73.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds