Wall clock time and date at job start Mon Mar 30 2020 06:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47242 * 2 1 4 4 C 1.53005 * 109.47082 * 239.99909 * 2 1 3 5 5 C 1.50703 * 109.47322 * 120.00082 * 2 1 3 6 6 N 1.30752 * 125.61550 * 254.96109 * 5 2 1 7 7 C 1.33580 * 109.14198 * 180.02562 * 6 5 2 8 8 C 1.35025 * 107.98285 * 0.05915 * 7 6 5 9 9 N 1.35315 * 125.61554 * 74.99894 * 5 2 1 10 10 H 0.97007 * 126.49689 * 359.90462 * 9 5 2 11 11 C 1.50651 * 124.45193 * 179.97438 * 8 7 6 12 12 C 1.53397 * 108.38465 * 343.59453 * 11 8 7 13 13 C 1.53125 * 109.44589 * 49.64514 * 12 11 8 14 14 H 1.09005 * 109.45784 * 49.98915 * 13 12 11 15 15 C 1.50695 * 109.45990 * 169.96393 * 13 12 11 16 16 H 1.08003 * 120.00514 * 5.35764 * 15 13 12 17 17 C 1.37878 * 119.99719 * 185.35375 * 15 13 12 18 18 N 1.31510 * 120.00237 * 185.15887 * 17 15 13 19 19 Si 1.86803 * 120.00223 * 5.16408 * 17 15 13 20 20 H 1.48494 * 109.47318 * 269.99959 * 19 17 15 21 21 H 1.48502 * 109.46733 * 29.99818 * 19 17 15 22 22 H 1.48499 * 109.47561 * 149.99443 * 19 17 15 23 23 C 1.50871 * 128.02831 * 180.16421 * 7 6 5 24 24 H 1.08998 * 109.47169 * 299.99912 * 1 2 3 25 25 H 1.08996 * 109.47134 * 59.99917 * 1 2 3 26 26 H 1.09004 * 109.47239 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47587 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47486 * 299.99807 * 3 2 1 29 29 H 1.09004 * 109.47025 * 60.00441 * 3 2 1 30 30 H 1.09004 * 109.47224 * 300.00181 * 4 2 1 31 31 H 1.08996 * 109.46994 * 60.00088 * 4 2 1 32 32 H 1.08997 * 109.46967 * 180.02562 * 4 2 1 33 33 H 1.08999 * 109.68079 * 223.87246 * 11 8 7 34 34 H 1.09008 * 109.71205 * 103.33815 * 11 8 7 35 35 H 1.08997 * 109.47723 * 289.64981 * 12 11 8 36 36 H 1.09004 * 109.47742 * 169.63568 * 12 11 8 37 37 H 0.97002 * 120.00230 * 355.00357 * 18 17 15 38 38 H 1.08999 * 109.67291 * 43.49488 * 23 7 6 39 39 H 1.08999 * 109.67683 * 282.95927 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2305 6 7 2.5462 -0.1344 2.2858 7 6 2.8811 -1.0715 3.1769 8 6 2.5643 -2.2756 2.6546 9 7 2.0266 -2.0495 1.4248 10 1 1.7008 -2.7211 0.8051 11 6 2.7869 -3.5924 3.3519 12 6 3.7716 -3.3680 4.5065 13 6 3.3115 -2.1712 5.3436 14 1 2.2581 -2.2894 5.5978 15 6 4.1281 -2.0994 6.6081 16 1 4.9542 -2.7791 6.7569 17 6 3.8207 -1.1659 7.5751 18 7 4.5931 -1.0345 8.6314 19 14 2.3071 -0.0878 7.3850 20 1 2.6718 1.1533 6.6558 21 1 1.2681 -0.8237 6.6209 22 1 1.7781 0.2640 8.7273 23 6 3.5020 -0.8797 4.5385 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9562 0.8901 30 1 1.6766 -1.7490 -1.2493 31 1 1.6766 -0.2075 -2.1392 32 1 3.1299 -0.7217 -1.2490 33 1 3.2033 -4.3141 2.6493 34 1 1.8405 -3.9655 3.7438 35 1 4.7648 -3.1694 4.1037 36 1 3.8053 -4.2588 5.1338 37 1 5.3371 -1.6420 8.7668 38 1 3.0118 -0.0527 5.0521 39 1 4.5654 -0.6665 4.4302 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259592151.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:56 Heat of formation + Delta-G solvation = 21.601187 kcal Electronic energy + Delta-G solvation = -18565.064613 eV Core-core repulsion = 15893.009964 eV Total energy + Delta-G solvation = -2672.054649 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.97051 -37.19586 -35.67722 -32.80235 -32.28627 -29.35960 -28.22339 -27.46819 -27.16287 -24.35229 -22.90570 -21.78148 -20.15106 -19.11384 -18.13517 -17.43238 -16.94327 -15.20357 -14.90173 -14.29437 -13.96224 -13.92877 -13.49733 -13.22239 -12.86863 -12.59433 -12.43210 -12.22103 -12.15278 -11.79928 -11.75977 -11.28474 -11.16755 -11.02575 -10.97680 -10.61162 -10.30656 -10.07426 -9.88152 -9.60751 -9.24861 -9.14179 -8.58017 -8.33674 -7.52195 -6.34504 -4.01544 2.40463 3.33560 3.51115 3.53430 3.56918 3.70147 4.37056 4.57164 4.68434 4.84563 5.07009 5.21587 5.36015 5.38283 5.49950 5.53948 5.56466 5.68320 5.68947 5.75725 5.81961 5.86775 5.97139 6.07075 6.11504 6.17233 6.37529 6.41595 6.46694 6.65342 6.76724 6.82328 7.06487 7.21919 7.38562 7.60441 7.76692 8.18776 8.44392 8.59539 8.96891 9.68916 11.04797 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.030875 B = 0.006494 C = 0.005803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.669849 B = 4310.465788 C = 4823.789593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.022 3.978 3 C -0.126 4.126 4 C -0.143 4.143 5 C 0.195 3.805 6 N -0.478 5.478 7 C 0.021 3.979 8 C -0.031 4.031 9 N -0.562 5.562 10 H 0.409 0.591 11 C -0.041 4.041 12 C -0.093 4.093 13 C 0.017 3.983 14 H 0.029 0.971 15 C -0.588 4.588 16 H 0.057 0.943 17 C 0.029 3.971 18 N -0.916 5.916 19 Si 1.051 2.949 20 H -0.281 1.281 21 H -0.279 1.279 22 H -0.292 1.292 23 C -0.036 4.036 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.266 0.734 38 H 0.060 0.940 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.737 -1.413 -19.524 21.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.020 3.980 3 C -0.184 4.184 4 C -0.201 4.201 5 C -0.068 4.068 6 N -0.198 5.198 7 C -0.109 4.109 8 C -0.145 4.145 9 N -0.165 5.165 10 H 0.246 0.754 11 C -0.080 4.080 12 C -0.132 4.132 13 C -0.003 4.003 14 H 0.047 0.953 15 C -0.626 4.626 16 H 0.075 0.925 17 C -0.175 4.175 18 N -0.551 5.551 19 Si 0.881 3.119 20 H -0.208 1.208 21 H -0.205 1.205 22 H -0.218 1.218 23 C -0.075 4.075 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.425 0.714 -18.662 20.488 hybrid contribution 0.609 -2.513 -1.181 2.842 sum -7.816 -1.799 -19.843 21.402 Atomic orbital electron populations 1.21906 0.93499 1.01809 1.02567 1.18918 0.95227 0.95567 0.88315 1.21654 1.01674 0.93139 1.01939 1.21931 1.01743 0.99718 0.96729 1.22973 1.05624 0.80126 0.98037 1.69946 1.15877 1.33244 1.00686 1.21173 1.03861 0.87860 0.98002 1.21087 1.07181 0.99007 0.87273 1.42682 1.49462 1.08513 1.15807 0.75404 1.20205 1.00655 0.90265 0.96851 1.21498 0.97016 1.00202 0.94441 1.19226 0.97441 0.89607 0.93991 0.95266 1.22054 1.17042 1.21660 1.01879 0.92486 1.25752 1.01320 0.97374 0.93065 1.70814 1.17324 1.37274 1.29689 0.83892 0.76184 0.76549 0.75291 1.20765 1.20485 1.21844 1.20593 0.99089 1.00722 0.87088 0.91827 0.91748 0.93015 0.92153 0.92610 0.91264 0.93116 0.91468 0.92070 0.92279 0.91225 0.92721 0.91835 0.92378 0.92166 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.46 37.16 0.31 -1.08 16 2 C 0.02 0.25 0.99 -155.66 -0.15 0.10 16 3 C -0.13 -1.48 8.02 37.15 0.30 -1.18 16 4 C -0.14 -1.29 8.34 37.16 0.31 -0.98 16 5 C 0.19 3.09 6.43 -154.95 -1.00 2.09 16 6 N -0.48 -9.63 10.54 -6.94 -0.07 -9.70 16 7 C 0.02 0.44 6.98 -82.89 -0.58 -0.14 16 8 C -0.03 -0.56 7.08 -81.86 -0.58 -1.14 16 9 N -0.56 -8.26 5.97 -6.53 -0.04 -8.30 16 10 H 0.41 4.45 8.50 -40.82 -0.35 4.10 16 11 C -0.04 -0.68 6.30 -27.70 -0.17 -0.86 16 12 C -0.09 -1.88 5.16 -26.46 -0.14 -2.01 16 13 C 0.02 0.41 1.65 -91.51 -0.15 0.26 16 14 H 0.03 0.73 6.62 -51.93 -0.34 0.39 16 15 C -0.59 -16.63 8.88 -34.44 -0.31 -16.93 16 16 H 0.06 1.71 7.98 -52.48 -0.42 1.29 16 17 C 0.03 0.85 5.43 -17.82 -0.10 0.75 16 18 N -0.92 -28.68 13.69 55.43 0.76 -27.92 16 19 Si 1.05 26.77 25.27 -169.99 -4.29 22.47 16 20 H -0.28 -6.97 6.85 56.52 0.39 -6.59 16 21 H -0.28 -6.75 6.36 56.52 0.36 -6.39 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 C -0.04 -0.87 5.11 -27.60 -0.14 -1.01 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 30 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 35 H 0.05 1.11 8.12 -51.93 -0.42 0.68 16 36 H 0.06 1.24 8.11 -51.93 -0.42 0.82 16 37 H 0.27 8.25 8.72 -40.82 -0.36 7.89 16 38 H 0.06 1.50 4.55 -51.93 -0.24 1.26 16 39 H 0.07 1.73 8.12 -51.93 -0.42 1.31 16 LS Contribution 304.34 15.07 4.59 4.59 Total: -1.00 -32.63 304.34 -7.89 -40.52 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.44 Total: 0.47 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -2.39 Total: -22.13 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.65 Total: -45.92 kcal Atomic # 14 Polarization: 26.77 SS G_CDS: -4.29 Total: 22.47 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.63 -7.89 -40.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259592151.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.123 kcal (2) G-P(sol) polarization free energy of solvation -32.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds