Wall clock time and date at job start Mon Mar 30 2020 06:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47242 * 2 1 4 4 C 1.53005 * 109.47082 * 239.99909 * 2 1 3 5 5 C 1.50703 * 109.47322 * 120.00082 * 2 1 3 6 6 N 1.30752 * 125.61550 * 254.96109 * 5 2 1 7 7 C 1.33580 * 109.14198 * 180.02562 * 6 5 2 8 8 C 1.35025 * 107.98285 * 0.05915 * 7 6 5 9 9 N 1.35315 * 125.61554 * 74.99894 * 5 2 1 10 10 H 0.97007 * 126.49689 * 359.90462 * 9 5 2 11 11 C 1.50651 * 124.45193 * 179.97438 * 8 7 6 12 12 C 1.53397 * 108.38465 * 343.59453 * 11 8 7 13 13 C 1.53125 * 109.44589 * 49.64514 * 12 11 8 14 14 H 1.09005 * 109.45784 * 49.98915 * 13 12 11 15 15 C 1.50695 * 109.45990 * 169.96393 * 13 12 11 16 16 H 1.08003 * 120.00514 * 5.35764 * 15 13 12 17 17 C 1.37878 * 119.99719 * 185.35375 * 15 13 12 18 18 N 1.31510 * 120.00237 * 185.15887 * 17 15 13 19 19 Si 1.86803 * 120.00223 * 5.16408 * 17 15 13 20 20 H 1.48494 * 109.47318 * 269.99959 * 19 17 15 21 21 H 1.48502 * 109.46733 * 29.99818 * 19 17 15 22 22 H 1.48499 * 109.47561 * 149.99443 * 19 17 15 23 23 C 1.50871 * 128.02831 * 180.16421 * 7 6 5 24 24 H 1.08998 * 109.47169 * 299.99912 * 1 2 3 25 25 H 1.08996 * 109.47134 * 59.99917 * 1 2 3 26 26 H 1.09004 * 109.47239 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47587 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47486 * 299.99807 * 3 2 1 29 29 H 1.09004 * 109.47025 * 60.00441 * 3 2 1 30 30 H 1.09004 * 109.47224 * 300.00181 * 4 2 1 31 31 H 1.08996 * 109.46994 * 60.00088 * 4 2 1 32 32 H 1.08997 * 109.46967 * 180.02562 * 4 2 1 33 33 H 1.08999 * 109.68079 * 223.87246 * 11 8 7 34 34 H 1.09008 * 109.71205 * 103.33815 * 11 8 7 35 35 H 1.08997 * 109.47723 * 289.64981 * 12 11 8 36 36 H 1.09004 * 109.47742 * 169.63568 * 12 11 8 37 37 H 0.97002 * 120.00230 * 355.00357 * 18 17 15 38 38 H 1.08999 * 109.67291 * 43.49488 * 23 7 6 39 39 H 1.08999 * 109.67683 * 282.95927 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2305 6 7 2.5462 -0.1344 2.2858 7 6 2.8811 -1.0715 3.1769 8 6 2.5643 -2.2756 2.6546 9 7 2.0266 -2.0495 1.4248 10 1 1.7008 -2.7211 0.8051 11 6 2.7869 -3.5924 3.3519 12 6 3.7716 -3.3680 4.5065 13 6 3.3115 -2.1712 5.3436 14 1 2.2581 -2.2894 5.5978 15 6 4.1281 -2.0994 6.6081 16 1 4.9542 -2.7791 6.7569 17 6 3.8207 -1.1659 7.5751 18 7 4.5931 -1.0345 8.6314 19 14 2.3071 -0.0878 7.3850 20 1 2.6718 1.1533 6.6558 21 1 1.2681 -0.8237 6.6209 22 1 1.7781 0.2640 8.7273 23 6 3.5020 -0.8797 4.5385 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9562 0.8901 30 1 1.6766 -1.7490 -1.2493 31 1 1.6766 -0.2075 -2.1392 32 1 3.1299 -0.7217 -1.2490 33 1 3.2033 -4.3141 2.6493 34 1 1.8405 -3.9655 3.7438 35 1 4.7648 -3.1694 4.1037 36 1 3.8053 -4.2588 5.1338 37 1 5.3371 -1.6420 8.7668 38 1 3.0118 -0.0527 5.0521 39 1 4.5654 -0.6665 4.4302 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259592151.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:55 Heat of formation + Delta-G solvation = 0.563127 kcal Electronic energy + Delta-G solvation = -18565.976892 eV Core-core repulsion = 15893.009964 eV Total energy + Delta-G solvation = -2672.966928 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.31714 -38.51289 -37.03660 -34.55852 -34.06491 -31.05232 -29.76510 -28.17508 -28.05354 -26.24439 -24.40990 -23.12634 -21.88456 -20.31705 -19.70271 -19.61606 -18.18715 -16.54126 -16.10000 -15.81732 -15.50621 -15.13870 -14.88857 -14.63279 -14.36565 -14.16878 -13.99328 -13.60182 -13.17794 -13.02252 -12.85461 -12.60380 -12.48466 -12.26010 -12.14912 -11.95205 -11.87922 -11.80228 -11.60413 -11.43300 -10.83801 -10.79124 -10.65595 -10.53446 -8.94301 -8.70520 -6.38033 1.08967 1.42110 1.47333 1.65817 2.13430 2.14051 2.43340 3.06553 3.31514 3.82690 3.94778 4.01715 4.06543 4.16290 4.18354 4.43223 4.50120 4.65681 4.72362 4.73591 4.78709 4.85120 4.86148 4.88551 4.99325 4.99797 5.02429 5.10384 5.17217 5.25487 5.37022 5.39389 5.45970 5.52419 5.62463 5.84478 6.05388 6.09402 6.59631 6.63420 7.23005 7.39798 8.67760 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.030875 B = 0.006494 C = 0.005803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.669849 B = 4310.465788 C = 4823.789593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.019 3.981 3 C -0.126 4.126 4 C -0.139 4.139 5 C 0.210 3.790 6 N -0.521 5.521 7 C -0.026 4.026 8 C -0.020 4.020 9 N -0.543 5.543 10 H 0.432 0.568 11 C -0.031 4.031 12 C -0.091 4.091 13 C 0.017 3.983 14 H 0.027 0.973 15 C -0.586 4.586 16 H 0.028 0.972 17 C -0.020 4.020 18 N -0.949 5.949 19 Si 1.087 2.913 20 H -0.277 1.277 21 H -0.258 1.258 22 H -0.286 1.286 23 C -0.029 4.029 24 H 0.041 0.959 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.042 0.958 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.067 0.933 37 H 0.254 0.746 38 H 0.040 0.960 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.101 -2.447 -23.204 25.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.017 3.983 3 C -0.183 4.183 4 C -0.197 4.197 5 C -0.054 4.054 6 N -0.241 5.241 7 C -0.154 4.154 8 C -0.137 4.137 9 N -0.148 5.148 10 H 0.273 0.727 11 C -0.070 4.070 12 C -0.129 4.129 13 C -0.003 4.003 14 H 0.045 0.955 15 C -0.624 4.624 16 H 0.046 0.954 17 C -0.217 4.217 18 N -0.586 5.586 19 Si 0.911 3.089 20 H -0.204 1.204 21 H -0.183 1.183 22 H -0.213 1.213 23 C -0.067 4.067 24 H 0.061 0.939 25 H 0.111 0.889 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.107 0.893 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.068 0.932 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.791 -0.358 -22.370 24.840 hybrid contribution 1.406 -2.194 -0.109 2.608 sum -9.385 -2.552 -22.480 24.494 Atomic orbital electron populations 1.21894 0.91765 1.02741 1.02993 1.19213 0.96479 0.95063 0.87533 1.21658 1.00610 0.93714 1.02352 1.21923 1.01032 1.00702 0.96000 1.23812 1.03039 0.80566 0.97966 1.69852 1.17866 1.34289 1.02084 1.20814 1.06992 0.89884 0.97754 1.21127 1.06029 0.98425 0.88096 1.42546 1.48484 1.08782 1.14968 0.72669 1.20165 1.00528 0.90303 0.95972 1.21388 0.97743 0.98289 0.95490 1.19156 0.96284 0.91946 0.92889 0.95539 1.22340 1.16199 1.20158 1.03697 0.95387 1.26943 1.03149 0.98867 0.92747 1.70917 1.18178 1.38164 1.31327 0.83433 0.74060 0.75712 0.75687 1.20362 1.18274 1.21300 1.20226 0.97778 0.99501 0.89221 0.93934 0.88860 0.91837 0.93833 0.89340 0.93685 0.91415 0.88848 0.93234 0.88270 0.89442 0.93559 0.91443 0.93676 0.94120 0.93472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.46 71.98 0.61 -1.57 16 2 C 0.02 0.38 0.99 -52.93 -0.05 0.33 16 3 C -0.13 -2.70 8.02 71.98 0.58 -2.12 16 4 C -0.14 -1.87 8.34 71.98 0.60 -1.27 16 5 C 0.21 6.18 6.43 137.97 0.89 7.07 16 6 N -0.52 -20.77 10.54 -175.88 -1.85 -22.62 16 7 C -0.03 -1.10 6.98 41.61 0.29 -0.81 16 8 C -0.02 -0.68 7.08 41.14 0.29 -0.39 16 9 N -0.54 -14.04 5.97 -174.58 -1.04 -15.08 16 10 H 0.43 7.20 8.50 -92.70 -0.79 6.41 16 11 C -0.03 -0.93 6.30 29.97 0.19 -0.74 16 12 C -0.09 -3.57 5.16 30.77 0.16 -3.41 16 13 C 0.02 0.81 1.65 -11.37 -0.02 0.80 16 14 H 0.03 1.31 6.62 -2.38 -0.02 1.29 16 15 C -0.59 -34.25 8.88 25.60 0.23 -34.02 16 16 H 0.03 1.75 7.98 -2.91 -0.02 1.73 16 17 C -0.02 -1.19 5.43 84.66 0.46 -0.73 16 18 N -0.95 -61.65 13.69 21.45 0.29 -61.36 16 19 Si 1.09 55.20 25.27 68.60 1.73 56.93 16 20 H -0.28 -13.81 6.85 99.48 0.68 -13.12 16 21 H -0.26 -12.11 6.36 99.48 0.63 -11.48 16 22 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 23 C -0.03 -1.40 5.11 30.03 0.15 -1.24 16 24 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.04 1.17 8.07 -2.39 -0.02 1.15 16 30 H 0.07 0.70 7.66 -2.38 -0.02 0.68 16 31 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 35 H 0.05 1.86 8.12 -2.39 -0.02 1.84 16 36 H 0.07 2.56 8.11 -2.38 -0.02 2.54 16 37 H 0.25 16.55 8.72 -92.71 -0.81 15.74 16 38 H 0.04 2.08 4.55 -2.39 -0.01 2.07 16 39 H 0.05 2.42 8.12 -2.39 -0.02 2.40 16 Total: -1.00 -74.97 304.34 3.61 -71.36 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.10 Total: 8.88 kcal Atomic # 6 Polarization: -42.49 SS G_CDS: 4.37 Total: -38.12 kcal Atomic # 7 Polarization: -96.46 SS G_CDS: -2.60 Total: -99.06 kcal Atomic # 14 Polarization: 55.20 SS G_CDS: 1.73 Total: 56.93 kcal Total: -74.97 3.61 -71.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259592151.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.924 kcal (2) G-P(sol) polarization free energy of solvation -74.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds