Wall clock time and date at job start Mon Mar 30 2020 06:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34996 * 126.41283 * 2 1 4 4 C 1.50698 * 125.65147 * 359.94510 * 3 2 1 5 5 C 1.52999 * 109.46758 * 186.63611 * 4 3 2 6 6 C 1.52996 * 109.47157 * 306.63666 * 4 3 2 7 7 C 1.52998 * 109.46811 * 66.63795 * 4 3 2 8 8 N 1.30416 * 108.69689 * 179.97438 * 3 2 1 9 9 C 1.34487 * 109.30487 * 359.97438 * 8 3 2 10 10 C 1.34428 * 107.86182 * 0.02562 * 9 8 3 11 11 C 1.51176 * 110.53076 * 179.97438 * 10 9 8 12 12 H 1.08999 * 110.34747 * 102.03484 * 11 10 9 13 13 C 1.50700 * 110.35057 * 224.30573 * 11 10 9 14 14 H 1.08000 * 119.99363 * 356.96812 * 13 11 10 15 15 C 1.37877 * 120.00371 * 176.97049 * 13 11 10 16 16 N 1.31509 * 119.99995 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99684 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47213 * 60.00244 * 17 15 13 19 19 H 1.48504 * 109.46657 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47528 * 299.99862 * 17 15 13 21 21 C 1.54480 * 104.93946 * 343.17056 * 11 10 9 22 22 C 1.51374 * 141.86179 * 180.02562 * 9 8 3 23 23 H 1.08996 * 109.47663 * 93.51979 * 1 2 3 24 24 H 1.09007 * 109.46484 * 213.52075 * 1 2 3 25 25 H 1.09003 * 109.47611 * 333.51523 * 1 2 3 26 26 H 1.09000 * 109.47229 * 60.00231 * 5 4 3 27 27 H 1.09006 * 109.46812 * 180.02562 * 5 4 3 28 28 H 1.08997 * 109.47633 * 299.99789 * 5 4 3 29 29 H 1.09000 * 109.46830 * 60.00165 * 6 4 3 30 30 H 1.09000 * 109.47232 * 179.97438 * 6 4 3 31 31 H 1.09000 * 109.47195 * 299.99992 * 6 4 3 32 32 H 1.09002 * 109.47402 * 64.57128 * 7 4 3 33 33 H 1.09002 * 109.46587 * 184.56623 * 7 4 3 34 34 H 1.08998 * 109.47049 * 304.56376 * 7 4 3 35 35 H 0.96998 * 119.99820 * 180.02562 * 16 15 13 36 36 H 1.08998 * 110.94698 * 267.37779 * 21 11 10 37 37 H 1.09005 * 110.94726 * 143.67821 * 21 11 10 38 38 H 1.09000 * 110.33423 * 77.95885 * 22 9 8 39 39 H 1.09008 * 110.42455 * 315.76420 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0864 0.0000 4 6 1.8022 2.5201 -0.0012 5 6 3.0086 3.4464 -0.1675 6 6 0.8271 2.7396 -1.1595 7 6 1.1000 2.8299 1.3224 8 7 3.5086 0.6895 0.0006 9 6 3.5459 -0.6548 0.0015 10 6 2.2783 -1.1025 0.0009 11 6 2.2499 -2.6139 0.0013 12 1 2.0291 -2.9886 1.0008 13 6 1.2295 -3.1191 -0.9860 14 1 0.6136 -2.4195 -1.5316 15 6 1.0823 -4.4743 -1.1928 16 7 1.8326 -5.3261 -0.5288 17 14 -0.1830 -5.1003 -2.4161 18 1 0.1252 -4.5629 -3.7657 19 1 -0.1430 -6.5844 -2.4538 20 1 -1.5366 -4.6515 -2.0018 21 6 3.6710 -3.0392 -0.4300 22 6 4.5134 -1.8190 0.0029 23 1 -0.3634 -0.0631 -1.0257 24 1 -0.3632 -0.8568 0.5676 25 1 -0.3634 0.9198 0.4583 26 1 3.5089 3.2257 -1.1104 27 1 2.6729 4.4835 -0.1679 28 1 3.7033 3.2901 0.6577 29 1 -0.0322 2.0797 -1.0410 30 1 0.4911 3.7765 -1.1601 31 1 1.3275 2.5189 -2.1024 32 1 1.8160 2.7523 2.1405 33 1 0.6934 3.8407 1.2900 34 1 0.2902 2.1174 1.4794 35 1 1.7292 -6.2795 -0.6745 36 1 3.7233 -3.1859 -1.5088 37 1 3.9864 -3.9381 0.0998 38 1 4.9188 -1.9734 1.0029 39 1 5.3199 -1.6443 -0.7093 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259611296.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:45 Heat of formation + Delta-G solvation = 52.115445 kcal Electronic energy + Delta-G solvation = -18871.723155 eV Core-core repulsion = 16200.991704 eV Total energy + Delta-G solvation = -2670.731452 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.62710 -37.03797 -35.01914 -33.42834 -32.03084 -27.92087 -27.26205 -26.95759 -26.73722 -26.02791 -23.45941 -21.75712 -19.18401 -18.95024 -18.35667 -16.46219 -15.72725 -15.01590 -14.72131 -14.41814 -14.04094 -14.00979 -13.59386 -12.66385 -12.44200 -12.20215 -12.16323 -12.00601 -11.89438 -11.76614 -11.55640 -11.27398 -11.10643 -10.92840 -10.83581 -10.67681 -10.59868 -10.49945 -9.93908 -9.74390 -9.07003 -8.78060 -8.64626 -8.46409 -7.04823 -6.09018 -4.14339 2.92232 3.25304 3.31122 3.33281 3.45503 3.89719 4.37029 4.53637 4.91113 5.08345 5.14634 5.20021 5.26441 5.43363 5.59784 5.64570 5.70534 5.78688 5.84555 5.90486 5.92896 6.01268 6.13288 6.19252 6.29535 6.37871 6.39599 6.52098 6.60411 6.89265 7.06384 7.10519 7.39553 7.53016 7.63809 7.75144 7.87628 8.11418 8.29437 8.83593 8.96067 9.50062 10.98686 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.028198 B = 0.007120 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.756899 B = 3931.382470 C = 4579.221867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.438 5.438 3 C 0.183 3.817 4 C 0.026 3.974 5 C -0.122 4.122 6 C -0.149 4.149 7 C -0.144 4.144 8 N -0.475 5.475 9 C -0.059 4.059 10 C 0.008 3.992 11 C 0.124 3.876 12 H 0.043 0.957 13 C -0.517 4.517 14 H 0.052 0.948 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.278 1.278 21 C -0.082 4.082 22 C -0.032 4.032 23 H 0.070 0.930 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.263 0.737 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.305 12.540 1.678 12.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.121 5.121 3 C -0.077 4.077 4 C 0.024 3.976 5 C -0.179 4.179 6 C -0.207 4.207 7 C -0.202 4.202 8 N -0.194 5.194 9 C -0.186 4.186 10 C -0.108 4.108 11 C 0.104 3.896 12 H 0.060 0.940 13 C -0.555 4.555 14 H 0.070 0.930 15 C -0.136 4.136 16 N -0.524 5.524 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.211 1.211 20 H -0.204 1.204 21 C -0.121 4.121 22 C -0.071 4.071 23 H 0.088 0.912 24 H 0.105 0.895 25 H 0.097 0.903 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.732 12.853 1.703 13.080 hybrid contribution -1.555 -0.969 -0.754 1.982 sum -3.287 11.883 0.949 12.366 Atomic orbital electron populations 1.22089 0.78184 1.03444 1.03194 1.44265 1.06490 1.05660 1.55643 1.22613 0.85276 0.89591 1.10230 1.18799 0.96088 0.86921 0.95775 1.21603 0.96464 0.96663 1.03218 1.22056 0.98899 1.01662 0.98037 1.21993 1.00395 1.01239 0.96524 1.69420 1.18497 1.11354 1.20110 1.21422 0.95492 0.90167 1.11563 1.22731 0.90280 0.93703 1.04039 1.17966 0.94473 0.79615 0.97505 0.93964 1.20978 1.19650 0.91494 1.23409 0.92952 1.24930 0.95928 0.96827 0.95895 1.69929 1.39026 1.02329 1.41068 0.86679 0.81836 0.77771 0.81855 1.20281 1.21125 1.20364 1.22272 0.94308 0.94635 1.00906 1.20522 0.95688 0.90653 1.00213 0.91191 0.89515 0.90339 0.92128 0.92899 0.91799 0.92294 0.91919 0.92197 0.92109 0.91933 0.92601 0.92723 0.92009 0.90694 0.92150 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.19 9.38 59.85 0.56 1.75 16 2 N -0.44 -8.82 3.15 -116.56 -0.37 -9.19 16 3 C 0.18 3.51 6.25 -155.53 -0.97 2.54 16 4 C 0.03 0.37 0.75 -155.66 -0.12 0.26 16 5 C -0.12 -1.61 7.96 37.16 0.30 -1.32 16 6 C -0.15 -1.83 8.25 37.16 0.31 -1.52 16 7 C -0.14 -1.72 8.35 37.16 0.31 -1.41 16 8 N -0.47 -10.43 10.53 -6.87 -0.07 -10.51 16 9 C -0.06 -1.38 7.98 -82.44 -0.66 -2.03 16 10 C 0.01 0.20 6.90 -81.39 -0.56 -0.37 16 11 C 0.12 3.12 2.82 -91.91 -0.26 2.86 16 12 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 13 C -0.52 -13.83 8.47 -34.44 -0.29 -14.12 16 14 H 0.05 1.40 7.76 -52.49 -0.41 0.99 16 15 C 0.07 1.79 5.33 -17.82 -0.09 1.69 16 16 N -0.89 -24.44 12.34 55.43 0.68 -23.76 16 17 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 C -0.08 -1.94 5.67 -25.19 -0.14 -2.08 16 22 C -0.03 -0.68 6.79 -26.79 -0.18 -0.87 16 23 H 0.07 1.09 7.95 -51.93 -0.41 0.67 16 24 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 25 H 0.08 0.99 4.44 -51.93 -0.23 0.76 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 29 H 0.06 0.70 5.25 -51.93 -0.27 0.43 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.66 5.64 -51.93 -0.29 0.37 16 35 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.06 1.53 7.91 -51.93 -0.41 1.12 16 37 H 0.07 1.78 7.92 -51.93 -0.41 1.37 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.05 1.09 8.14 -51.92 -0.42 0.67 16 LS Contribution 306.50 15.07 4.62 4.62 Total: -1.00 -30.14 306.50 -8.18 -38.32 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -6.22 Total: -0.58 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -1.80 Total: -14.62 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.24 Total: -43.45 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.14 -8.18 -38.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259611296.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.439 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds