Wall clock time and date at job start Mon Mar 30 2020 06:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34996 * 126.41283 * 2 1 4 4 C 1.50698 * 125.65147 * 359.94510 * 3 2 1 5 5 C 1.52999 * 109.46758 * 186.63611 * 4 3 2 6 6 C 1.52996 * 109.47157 * 306.63666 * 4 3 2 7 7 C 1.52998 * 109.46811 * 66.63795 * 4 3 2 8 8 N 1.30416 * 108.69689 * 179.97438 * 3 2 1 9 9 C 1.34487 * 109.30487 * 359.97438 * 8 3 2 10 10 C 1.34428 * 107.86182 * 0.02562 * 9 8 3 11 11 C 1.51176 * 110.53076 * 179.97438 * 10 9 8 12 12 H 1.08999 * 110.34747 * 102.03484 * 11 10 9 13 13 C 1.50700 * 110.35057 * 224.30573 * 11 10 9 14 14 H 1.08000 * 119.99363 * 356.96812 * 13 11 10 15 15 C 1.37877 * 120.00371 * 176.97049 * 13 11 10 16 16 N 1.31509 * 119.99995 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99684 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47213 * 60.00244 * 17 15 13 19 19 H 1.48504 * 109.46657 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47528 * 299.99862 * 17 15 13 21 21 C 1.54480 * 104.93946 * 343.17056 * 11 10 9 22 22 C 1.51374 * 141.86179 * 180.02562 * 9 8 3 23 23 H 1.08996 * 109.47663 * 93.51979 * 1 2 3 24 24 H 1.09007 * 109.46484 * 213.52075 * 1 2 3 25 25 H 1.09003 * 109.47611 * 333.51523 * 1 2 3 26 26 H 1.09000 * 109.47229 * 60.00231 * 5 4 3 27 27 H 1.09006 * 109.46812 * 180.02562 * 5 4 3 28 28 H 1.08997 * 109.47633 * 299.99789 * 5 4 3 29 29 H 1.09000 * 109.46830 * 60.00165 * 6 4 3 30 30 H 1.09000 * 109.47232 * 179.97438 * 6 4 3 31 31 H 1.09000 * 109.47195 * 299.99992 * 6 4 3 32 32 H 1.09002 * 109.47402 * 64.57128 * 7 4 3 33 33 H 1.09002 * 109.46587 * 184.56623 * 7 4 3 34 34 H 1.08998 * 109.47049 * 304.56376 * 7 4 3 35 35 H 0.96998 * 119.99820 * 180.02562 * 16 15 13 36 36 H 1.08998 * 110.94698 * 267.37779 * 21 11 10 37 37 H 1.09005 * 110.94726 * 143.67821 * 21 11 10 38 38 H 1.09000 * 110.33423 * 77.95885 * 22 9 8 39 39 H 1.09008 * 110.42455 * 315.76420 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0864 0.0000 4 6 1.8022 2.5201 -0.0012 5 6 3.0086 3.4464 -0.1675 6 6 0.8271 2.7396 -1.1595 7 6 1.1000 2.8299 1.3224 8 7 3.5086 0.6895 0.0006 9 6 3.5459 -0.6548 0.0015 10 6 2.2783 -1.1025 0.0009 11 6 2.2499 -2.6139 0.0013 12 1 2.0291 -2.9886 1.0008 13 6 1.2295 -3.1191 -0.9860 14 1 0.6136 -2.4195 -1.5316 15 6 1.0823 -4.4743 -1.1928 16 7 1.8326 -5.3261 -0.5288 17 14 -0.1830 -5.1003 -2.4161 18 1 0.1252 -4.5629 -3.7657 19 1 -0.1430 -6.5844 -2.4538 20 1 -1.5366 -4.6515 -2.0018 21 6 3.6710 -3.0392 -0.4300 22 6 4.5134 -1.8190 0.0029 23 1 -0.3634 -0.0631 -1.0257 24 1 -0.3632 -0.8568 0.5676 25 1 -0.3634 0.9198 0.4583 26 1 3.5089 3.2257 -1.1104 27 1 2.6729 4.4835 -0.1679 28 1 3.7033 3.2901 0.6577 29 1 -0.0322 2.0797 -1.0410 30 1 0.4911 3.7765 -1.1601 31 1 1.3275 2.5189 -2.1024 32 1 1.8160 2.7523 2.1405 33 1 0.6934 3.8407 1.2900 34 1 0.2902 2.1174 1.4794 35 1 1.7292 -6.2795 -0.6745 36 1 3.7233 -3.1859 -1.5088 37 1 3.9864 -3.9381 0.0998 38 1 4.9188 -1.9734 1.0029 39 1 5.3199 -1.6443 -0.7093 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259611296.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:45 Heat of formation + Delta-G solvation = 35.998912 kcal Electronic energy + Delta-G solvation = -18872.422021 eV Core-core repulsion = 16200.991704 eV Total energy + Delta-G solvation = -2671.430317 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.23128 -38.45035 -36.57998 -35.05166 -33.95576 -29.72138 -28.43723 -28.18960 -28.04239 -27.53743 -25.41448 -23.25647 -20.95001 -20.57020 -19.72538 -18.45700 -17.30487 -16.65405 -16.41279 -15.81379 -15.45677 -15.13480 -15.07734 -14.34112 -13.97410 -13.75827 -13.50693 -13.44235 -13.07212 -13.00475 -12.95834 -12.80789 -12.67135 -12.56927 -12.48393 -12.12813 -11.96732 -11.84008 -11.64895 -11.52389 -11.06178 -10.56309 -10.47077 -10.22696 -8.78426 -8.13748 -6.27032 1.28702 1.40382 1.41654 1.48955 1.94760 2.22540 2.41221 3.13820 3.19303 3.66243 3.94448 3.95098 4.03439 4.10393 4.34100 4.35585 4.49162 4.56056 4.63685 4.72294 4.75874 4.79773 4.86447 4.98555 5.01385 5.05212 5.11919 5.20115 5.23515 5.33719 5.40441 5.48831 5.54245 5.59377 5.80400 5.81337 5.94863 6.25694 6.58335 6.75614 7.29856 7.41352 8.92391 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.028198 B = 0.007120 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.756899 B = 3931.382470 C = 4579.221867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.442 5.442 3 C 0.202 3.798 4 C 0.021 3.979 5 C -0.118 4.118 6 C -0.146 4.146 7 C -0.140 4.140 8 N -0.505 5.505 9 C -0.075 4.075 10 C -0.028 4.028 11 C 0.124 3.876 12 H 0.012 0.988 13 C -0.530 4.530 14 H 0.047 0.953 15 C 0.022 3.978 16 N -0.912 5.912 17 Si 0.953 3.047 18 H -0.277 1.277 19 H -0.281 1.281 20 H -0.269 1.269 21 C -0.072 4.072 22 C -0.025 4.025 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.118 0.882 26 H 0.042 0.958 27 H 0.090 0.910 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.099 0.901 34 H 0.056 0.944 35 H 0.265 0.735 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.816 14.833 1.320 15.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.124 5.124 3 C -0.060 4.060 4 C 0.019 3.981 5 C -0.176 4.176 6 C -0.203 4.203 7 C -0.197 4.197 8 N -0.224 5.224 9 C -0.202 4.202 10 C -0.144 4.144 11 C 0.104 3.896 12 H 0.030 0.970 13 C -0.568 4.568 14 H 0.065 0.935 15 C -0.178 4.178 16 N -0.550 5.550 17 Si 0.778 3.222 18 H -0.202 1.202 19 H -0.206 1.206 20 H -0.194 1.194 21 C -0.111 4.111 22 C -0.063 4.063 23 H 0.094 0.906 24 H 0.093 0.907 25 H 0.136 0.864 26 H 0.061 0.939 27 H 0.109 0.891 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.256 15.141 1.349 15.546 hybrid contribution -1.095 -1.591 -0.616 2.027 sum -4.351 13.550 0.733 14.250 Atomic orbital electron populations 1.22341 0.76002 1.05060 1.03843 1.44515 1.07928 1.04872 1.55082 1.23795 0.84540 0.91444 1.06196 1.19188 0.97220 0.83593 0.98132 1.21595 0.95770 0.98576 1.01639 1.22058 0.98104 1.04112 0.96057 1.21983 0.99868 1.03463 0.94405 1.69463 1.20271 1.10516 1.22180 1.21754 0.95838 0.91136 1.11465 1.22487 0.91441 0.93501 1.07007 1.17770 0.94892 0.81349 0.95546 0.97023 1.21183 1.20100 0.91830 1.23731 0.93463 1.25657 0.97716 0.96934 0.97504 1.70037 1.40241 1.02518 1.42197 0.85693 0.79776 0.77252 0.79434 1.20203 1.20643 1.19362 1.22038 0.94312 0.95362 0.99372 1.20439 0.95395 0.89176 1.01302 0.90627 0.90675 0.86395 0.93850 0.89128 0.93269 0.91948 0.88250 0.93901 0.93226 0.88223 0.92523 0.92633 0.93865 0.91616 0.90725 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.13 9.38 127.77 1.20 3.33 16 2 N -0.44 -17.64 3.15 -522.68 -1.65 -19.29 16 3 C 0.20 7.53 6.25 138.17 0.86 8.39 16 4 C 0.02 0.53 0.75 -52.93 -0.04 0.49 16 5 C -0.12 -2.82 7.96 71.98 0.57 -2.25 16 6 C -0.15 -3.05 8.25 71.98 0.59 -2.45 16 7 C -0.14 -2.81 8.35 71.98 0.60 -2.21 16 8 N -0.51 -22.17 10.53 -175.64 -1.85 -24.02 16 9 C -0.08 -3.54 7.98 41.49 0.33 -3.21 16 10 C -0.03 -1.35 6.90 41.03 0.28 -1.07 16 11 C 0.12 6.50 2.82 -11.63 -0.03 6.47 16 12 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 13 C -0.53 -29.09 8.47 25.60 0.22 -28.87 16 14 H 0.05 2.57 7.76 -2.91 -0.02 2.55 16 15 C 0.02 1.20 5.33 84.66 0.45 1.65 16 16 N -0.91 -51.43 12.34 21.45 0.26 -51.16 16 17 Si 0.95 42.71 29.54 68.60 2.03 44.73 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 21 C -0.07 -3.52 5.67 31.59 0.18 -3.34 16 22 C -0.02 -1.07 6.79 30.56 0.21 -0.86 16 23 H 0.08 2.24 7.95 -2.39 -0.02 2.22 16 24 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 25 H 0.12 2.63 4.44 -2.39 -0.01 2.62 16 26 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.05 1.31 8.13 -2.39 -0.02 1.29 16 29 H 0.06 1.26 5.25 -2.39 -0.01 1.24 16 30 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 1.13 5.64 -2.39 -0.01 1.11 16 35 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 36 H 0.04 2.22 7.91 -2.39 -0.02 2.21 16 37 H 0.07 3.27 7.92 -2.38 -0.02 3.25 16 38 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 39 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 Total: -1.00 -66.78 306.50 5.24 -61.55 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 1.02 Total: 12.12 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: 5.43 Total: -23.93 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -3.23 Total: -94.47 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -66.78 5.24 -61.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259611296.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.544 kcal (2) G-P(sol) polarization free energy of solvation -66.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds