Wall clock time and date at job start Mon Mar 30 2020 06:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34993 * 126.41237 * 2 1 4 4 C 1.50700 * 125.65158 * 359.96090 * 3 2 1 5 5 C 1.52998 * 109.47096 * 53.49857 * 4 3 2 6 6 C 1.53001 * 109.47014 * 173.50016 * 4 3 2 7 7 C 1.53007 * 109.47062 * 293.49685 * 4 3 2 8 8 N 1.30413 * 108.70113 * 179.82374 * 3 2 1 9 9 C 1.34490 * 109.30170 * 0.44455 * 8 3 2 10 10 C 1.34429 * 107.86082 * 359.71793 * 9 8 3 11 11 C 1.51178 * 110.53257 * 180.02562 * 10 9 8 12 12 H 1.08998 * 110.34540 * 257.96412 * 11 10 9 13 13 C 1.50701 * 110.34978 * 135.69457 * 11 10 9 14 14 H 1.08003 * 119.99602 * 359.97438 * 13 11 10 15 15 C 1.37870 * 120.00535 * 179.97438 * 13 11 10 16 16 N 1.31524 * 119.99651 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 120.00491 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.46939 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47678 * 119.99805 * 17 15 13 20 20 H 1.48508 * 109.47083 * 240.00267 * 17 15 13 21 21 C 1.54475 * 104.93983 * 16.82966 * 11 10 9 22 22 C 1.51376 * 141.86403 * 179.73141 * 9 8 3 23 23 H 1.08996 * 109.47451 * 264.75199 * 1 2 3 24 24 H 1.09008 * 109.46579 * 144.75200 * 1 2 3 25 25 H 1.08997 * 109.47207 * 24.75489 * 1 2 3 26 26 H 1.08998 * 109.47340 * 59.99757 * 5 4 3 27 27 H 1.08994 * 109.46849 * 180.02562 * 5 4 3 28 28 H 1.08998 * 109.46805 * 299.99797 * 5 4 3 29 29 H 1.08998 * 109.47346 * 60.00350 * 6 4 3 30 30 H 1.09009 * 109.46733 * 180.02562 * 6 4 3 31 31 H 1.09002 * 109.47166 * 299.99560 * 6 4 3 32 32 H 1.08997 * 109.46601 * 66.25409 * 7 4 3 33 33 H 1.09000 * 109.46847 * 186.25337 * 7 4 3 34 34 H 1.09001 * 109.47125 * 306.25457 * 7 4 3 35 35 H 0.97000 * 119.99600 * 180.02562 * 16 15 13 36 36 H 1.08997 * 110.95174 * 92.62235 * 21 11 10 37 37 H 1.09004 * 110.94996 * 216.29042 * 21 11 10 38 38 H 1.08997 * 110.33845 * 44.23988 * 22 9 8 39 39 H 1.09005 * 110.42276 * 282.04051 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0864 0.0000 4 6 1.8022 2.5201 -0.0008 5 6 0.8282 2.7416 1.1581 6 6 3.0087 3.4468 0.1627 7 6 1.0987 2.8277 -1.3243 8 7 3.5086 0.6896 0.0038 9 6 3.5460 -0.6547 -0.0035 10 6 2.2784 -1.1024 -0.0058 11 6 2.2499 -2.6139 -0.0134 12 1 2.0298 -2.9838 -1.0148 13 6 1.2290 -3.1237 0.9709 14 1 0.6473 -2.4264 1.5555 15 6 1.0376 -4.4803 1.1253 16 7 1.7456 -5.3296 0.4130 17 14 -0.2284 -5.1123 2.3448 18 1 -0.8868 -3.9624 3.0153 19 1 -1.2486 -5.9176 1.6268 20 1 0.4444 -5.9591 3.3626 21 6 3.6707 -3.0412 0.4167 22 6 4.5135 -1.8189 -0.0097 23 1 -0.3634 -0.0940 1.0233 24 1 -0.3633 -0.8393 -0.5931 25 1 -0.3633 0.9332 -0.4303 26 1 1.3293 2.5224 2.1009 27 1 0.4922 3.7784 1.1572 28 1 -0.0313 2.0814 1.0414 29 1 3.7026 3.2891 -0.6629 30 1 2.6729 4.4839 0.1626 31 1 3.5099 3.2277 1.1056 32 1 0.1786 2.2470 -1.3901 33 1 0.8617 3.8906 -1.3713 34 1 1.7546 2.5646 -2.1542 35 1 1.6107 -6.2840 0.5213 36 1 3.7225 -3.1930 1.4948 37 1 3.9863 -3.9379 -0.1167 38 1 5.3186 -1.6462 0.7044 39 1 4.9206 -1.9698 -1.0095 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259611312.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:47 Heat of formation + Delta-G solvation = 51.759358 kcal Electronic energy + Delta-G solvation = -18867.484937 eV Core-core repulsion = 16196.738044 eV Total energy + Delta-G solvation = -2670.746893 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.62692 -37.03897 -35.01781 -33.42337 -32.04123 -27.92128 -27.26056 -26.96085 -26.74335 -26.02756 -23.46487 -21.76346 -19.18406 -18.94944 -18.35819 -16.47514 -15.73561 -15.01537 -14.72183 -14.42156 -14.05683 -13.98250 -13.60190 -12.64968 -12.43136 -12.23561 -12.17126 -11.98068 -11.89105 -11.77448 -11.55963 -11.29166 -11.12942 -10.93764 -10.83127 -10.67039 -10.58485 -10.49406 -9.96358 -9.74344 -9.06599 -8.77848 -8.64646 -8.47326 -7.05150 -6.09690 -4.14678 2.92385 3.23145 3.31997 3.34656 3.45721 3.89427 4.36849 4.53414 4.91074 5.08286 5.13511 5.19981 5.26134 5.43218 5.59764 5.65382 5.70735 5.79459 5.85098 5.90535 5.93066 6.00844 6.12579 6.19256 6.28585 6.37831 6.38848 6.52107 6.59511 6.88752 7.06009 7.09681 7.38628 7.51373 7.62966 7.74308 7.87184 8.11301 8.29339 8.84170 8.95937 9.49913 10.98284 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.028117 B = 0.007120 C = 0.006110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.595087 B = 3931.438844 C = 4581.236997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.438 5.438 3 C 0.183 3.817 4 C 0.026 3.974 5 C -0.149 4.149 6 C -0.122 4.122 7 C -0.143 4.143 8 N -0.475 5.475 9 C -0.060 4.060 10 C 0.009 3.991 11 C 0.123 3.877 12 H 0.045 0.955 13 C -0.515 4.515 14 H 0.053 0.947 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.890 3.110 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.283 1.283 21 C -0.085 4.085 22 C -0.031 4.031 23 H 0.070 0.930 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.262 0.738 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.179 12.611 -1.520 12.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.120 5.120 3 C -0.077 4.077 4 C 0.024 3.976 5 C -0.207 4.207 6 C -0.179 4.179 7 C -0.201 4.201 8 N -0.194 5.194 9 C -0.187 4.187 10 C -0.107 4.107 11 C 0.104 3.896 12 H 0.063 0.937 13 C -0.553 4.553 14 H 0.072 0.928 15 C -0.137 4.137 16 N -0.524 5.524 17 Si 0.718 3.282 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.124 4.124 22 C -0.070 4.070 23 H 0.088 0.912 24 H 0.104 0.896 25 H 0.097 0.903 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.618 12.933 -1.541 13.125 hybrid contribution -1.545 -1.001 0.736 1.983 sum -3.163 11.932 -0.805 12.370 Atomic orbital electron populations 1.22089 0.78158 1.03341 1.03295 1.44263 1.06506 1.05646 1.55587 1.22619 0.85281 0.89592 1.10227 1.18804 0.96096 0.86920 0.95776 1.22058 0.98898 1.01674 0.98042 1.21601 0.96496 0.96614 1.03220 1.21989 1.00237 1.01326 0.96552 1.69419 1.18494 1.11346 1.20129 1.21417 0.95484 0.90174 1.11613 1.22728 0.90262 0.93712 1.04039 1.17976 0.94362 0.79634 0.97678 0.93728 1.21049 1.20541 0.91453 1.22274 0.92841 1.24943 0.96001 0.96878 0.95831 1.69955 1.40129 1.02262 1.40056 0.86563 0.81454 0.78893 0.81265 1.19952 1.20967 1.20857 1.22297 0.94484 0.94702 1.00880 1.20503 0.95656 0.90605 1.00236 0.91164 0.89580 0.90331 0.92201 0.91920 0.92289 0.91793 0.92898 0.92128 0.92611 0.91887 0.92147 0.92843 0.92023 0.90780 0.92657 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.19 9.48 59.85 0.57 1.76 16 2 N -0.44 -8.81 3.15 -116.56 -0.37 -9.18 16 3 C 0.18 3.50 6.25 -155.53 -0.97 2.53 16 4 C 0.03 0.37 0.75 -155.66 -0.12 0.25 16 5 C -0.15 -1.83 8.25 37.16 0.31 -1.53 16 6 C -0.12 -1.61 7.95 37.16 0.30 -1.31 16 7 C -0.14 -1.71 8.33 37.16 0.31 -1.41 16 8 N -0.48 -10.42 10.53 -6.87 -0.07 -10.49 16 9 C -0.06 -1.38 7.98 -82.44 -0.66 -2.04 16 10 C 0.01 0.20 6.90 -81.39 -0.56 -0.36 16 11 C 0.12 3.10 2.76 -91.91 -0.25 2.84 16 12 H 0.04 1.21 8.14 -51.93 -0.42 0.78 16 13 C -0.51 -13.76 8.43 -34.44 -0.29 -14.05 16 14 H 0.05 1.44 7.76 -52.48 -0.41 1.03 16 15 C 0.07 1.76 5.34 -17.82 -0.10 1.67 16 16 N -0.89 -24.49 12.57 55.43 0.70 -23.79 16 17 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.08 -1.98 5.83 -25.19 -0.15 -2.13 16 22 C -0.03 -0.66 6.79 -26.78 -0.18 -0.85 16 23 H 0.07 1.10 8.02 -51.93 -0.42 0.69 16 24 H 0.09 1.43 8.14 -51.92 -0.42 1.01 16 25 H 0.08 0.99 4.31 -51.93 -0.22 0.77 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.71 5.26 -51.93 -0.27 0.43 16 29 H 0.06 0.91 8.13 -51.93 -0.42 0.48 16 30 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.64 5.75 -51.93 -0.30 0.34 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.06 1.51 7.91 -51.93 -0.41 1.10 16 37 H 0.07 1.75 8.02 -51.93 -0.42 1.33 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 307.02 15.07 4.63 4.63 Total: -1.00 -30.20 307.02 -8.16 -38.37 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -6.23 Total: -0.62 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -1.80 Total: -14.62 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.26 Total: -43.46 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.20 -8.16 -38.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259611312.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.128 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds