Wall clock time and date at job start Mon Mar 30 2020 06:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34993 * 126.41237 * 2 1 4 4 C 1.50700 * 125.65158 * 359.96090 * 3 2 1 5 5 C 1.52998 * 109.47096 * 53.49857 * 4 3 2 6 6 C 1.53001 * 109.47014 * 173.50016 * 4 3 2 7 7 C 1.53007 * 109.47062 * 293.49685 * 4 3 2 8 8 N 1.30413 * 108.70113 * 179.82374 * 3 2 1 9 9 C 1.34490 * 109.30170 * 0.44455 * 8 3 2 10 10 C 1.34429 * 107.86082 * 359.71793 * 9 8 3 11 11 C 1.51178 * 110.53257 * 180.02562 * 10 9 8 12 12 H 1.08998 * 110.34540 * 257.96412 * 11 10 9 13 13 C 1.50701 * 110.34978 * 135.69457 * 11 10 9 14 14 H 1.08003 * 119.99602 * 359.97438 * 13 11 10 15 15 C 1.37870 * 120.00535 * 179.97438 * 13 11 10 16 16 N 1.31524 * 119.99651 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 120.00491 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.46939 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47678 * 119.99805 * 17 15 13 20 20 H 1.48508 * 109.47083 * 240.00267 * 17 15 13 21 21 C 1.54475 * 104.93983 * 16.82966 * 11 10 9 22 22 C 1.51376 * 141.86403 * 179.73141 * 9 8 3 23 23 H 1.08996 * 109.47451 * 264.75199 * 1 2 3 24 24 H 1.09008 * 109.46579 * 144.75200 * 1 2 3 25 25 H 1.08997 * 109.47207 * 24.75489 * 1 2 3 26 26 H 1.08998 * 109.47340 * 59.99757 * 5 4 3 27 27 H 1.08994 * 109.46849 * 180.02562 * 5 4 3 28 28 H 1.08998 * 109.46805 * 299.99797 * 5 4 3 29 29 H 1.08998 * 109.47346 * 60.00350 * 6 4 3 30 30 H 1.09009 * 109.46733 * 180.02562 * 6 4 3 31 31 H 1.09002 * 109.47166 * 299.99560 * 6 4 3 32 32 H 1.08997 * 109.46601 * 66.25409 * 7 4 3 33 33 H 1.09000 * 109.46847 * 186.25337 * 7 4 3 34 34 H 1.09001 * 109.47125 * 306.25457 * 7 4 3 35 35 H 0.97000 * 119.99600 * 180.02562 * 16 15 13 36 36 H 1.08997 * 110.95174 * 92.62235 * 21 11 10 37 37 H 1.09004 * 110.94996 * 216.29042 * 21 11 10 38 38 H 1.08997 * 110.33845 * 44.23988 * 22 9 8 39 39 H 1.09005 * 110.42276 * 282.04051 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0864 0.0000 4 6 1.8022 2.5201 -0.0008 5 6 0.8282 2.7416 1.1581 6 6 3.0087 3.4468 0.1627 7 6 1.0987 2.8277 -1.3243 8 7 3.5086 0.6896 0.0038 9 6 3.5460 -0.6547 -0.0035 10 6 2.2784 -1.1024 -0.0058 11 6 2.2499 -2.6139 -0.0134 12 1 2.0298 -2.9838 -1.0148 13 6 1.2290 -3.1237 0.9709 14 1 0.6473 -2.4264 1.5555 15 6 1.0376 -4.4803 1.1253 16 7 1.7456 -5.3296 0.4130 17 14 -0.2284 -5.1123 2.3448 18 1 -0.8868 -3.9624 3.0153 19 1 -1.2486 -5.9176 1.6268 20 1 0.4444 -5.9591 3.3626 21 6 3.6707 -3.0412 0.4167 22 6 4.5135 -1.8189 -0.0097 23 1 -0.3634 -0.0940 1.0233 24 1 -0.3633 -0.8393 -0.5931 25 1 -0.3633 0.9332 -0.4303 26 1 1.3293 2.5224 2.1009 27 1 0.4922 3.7784 1.1572 28 1 -0.0313 2.0814 1.0414 29 1 3.7026 3.2891 -0.6629 30 1 2.6729 4.4839 0.1626 31 1 3.5099 3.2277 1.1056 32 1 0.1786 2.2470 -1.3901 33 1 0.8617 3.8906 -1.3713 34 1 1.7546 2.5646 -2.1542 35 1 1.6107 -6.2840 0.5213 36 1 3.7225 -3.1930 1.4948 37 1 3.9863 -3.9379 -0.1167 38 1 5.3186 -1.6462 0.7044 39 1 4.9206 -1.9698 -1.0095 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259611312.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:47 Heat of formation + Delta-G solvation = 35.579088 kcal Electronic energy + Delta-G solvation = -18868.186566 eV Core-core repulsion = 16196.738044 eV Total energy + Delta-G solvation = -2671.448522 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.23017 -38.44877 -36.57653 -35.05002 -33.96577 -29.72050 -28.44429 -28.18729 -28.04600 -27.53661 -25.41980 -23.26051 -20.94585 -20.56892 -19.72680 -18.47575 -17.31335 -16.65246 -16.40654 -15.81188 -15.45946 -15.15431 -15.05888 -14.34331 -13.98432 -13.75121 -13.50055 -13.43623 -13.10833 -13.00288 -12.97235 -12.80897 -12.67270 -12.57265 -12.44843 -12.13751 -11.97399 -11.84582 -11.66120 -11.51528 -11.05653 -10.56986 -10.47397 -10.22720 -8.78637 -8.14495 -6.27445 1.28880 1.38371 1.41359 1.50865 1.94914 2.22458 2.40934 3.13378 3.19022 3.66372 3.92875 3.95796 4.02968 4.10315 4.34327 4.35534 4.48875 4.55741 4.63842 4.72428 4.76145 4.79427 4.86094 4.99676 5.00531 5.04745 5.11748 5.19906 5.23713 5.33751 5.40261 5.48891 5.53680 5.58017 5.79900 5.80780 5.94919 6.25649 6.58287 6.76027 7.29760 7.41157 8.92253 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.028117 B = 0.007120 C = 0.006110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.595087 B = 3931.438844 C = 4581.236997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.442 5.442 3 C 0.202 3.798 4 C 0.021 3.979 5 C -0.146 4.146 6 C -0.118 4.118 7 C -0.139 4.139 8 N -0.505 5.505 9 C -0.075 4.075 10 C -0.028 4.028 11 C 0.123 3.877 12 H 0.013 0.987 13 C -0.527 4.527 14 H 0.046 0.954 15 C 0.021 3.979 16 N -0.913 5.913 17 Si 0.954 3.046 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.280 1.280 21 C -0.075 4.075 22 C -0.024 4.024 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.118 0.882 26 H 0.042 0.958 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.044 0.956 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.634 14.888 -1.128 15.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.124 5.124 3 C -0.060 4.060 4 C 0.018 3.982 5 C -0.203 4.203 6 C -0.176 4.176 7 C -0.197 4.197 8 N -0.224 5.224 9 C -0.202 4.202 10 C -0.145 4.145 11 C 0.104 3.896 12 H 0.031 0.969 13 C -0.565 4.565 14 H 0.065 0.935 15 C -0.179 4.179 16 N -0.552 5.552 17 Si 0.779 3.221 18 H -0.195 1.195 19 H -0.202 1.202 20 H -0.206 1.206 21 C -0.114 4.114 22 C -0.062 4.062 23 H 0.092 0.908 24 H 0.093 0.907 25 H 0.136 0.864 26 H 0.061 0.939 27 H 0.117 0.883 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.117 0.883 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.084 15.205 -1.153 15.557 hybrid contribution -1.103 -1.619 0.586 2.044 sum -4.187 13.586 -0.566 14.228 Atomic orbital electron populations 1.22336 0.76010 1.05075 1.03778 1.44513 1.07926 1.04878 1.55044 1.23799 0.84552 0.91439 1.06197 1.19193 0.97238 0.83601 0.98119 1.22058 0.98096 1.04111 0.96073 1.21597 0.95794 0.98532 1.01647 1.21976 0.99672 1.03781 0.94229 1.69463 1.20250 1.10517 1.22186 1.21756 0.95829 0.91140 1.11468 1.22490 0.91435 0.93513 1.07031 1.17777 0.94826 0.81359 0.95656 0.96875 1.21223 1.20983 0.91741 1.22541 0.93532 1.25666 0.97790 0.96991 0.97433 1.70057 1.41348 1.02524 1.41229 0.85572 0.79159 0.78275 0.79053 1.19488 1.20248 1.20610 1.22073 0.94415 0.95433 0.99455 1.20423 0.95366 0.89101 1.01338 0.90750 0.90685 0.86366 0.93883 0.88261 0.91965 0.93269 0.89105 0.93840 0.91996 0.88300 0.93718 0.92653 0.93721 0.91674 0.91200 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.16 9.48 127.77 1.21 3.37 16 2 N -0.44 -17.64 3.15 -522.68 -1.65 -19.29 16 3 C 0.20 7.52 6.25 138.17 0.86 8.39 16 4 C 0.02 0.52 0.75 -52.93 -0.04 0.48 16 5 C -0.15 -3.05 8.25 71.98 0.59 -2.46 16 6 C -0.12 -2.81 7.95 71.98 0.57 -2.24 16 7 C -0.14 -2.80 8.33 71.98 0.60 -2.20 16 8 N -0.50 -22.13 10.53 -175.63 -1.85 -23.98 16 9 C -0.08 -3.53 7.98 41.49 0.33 -3.20 16 10 C -0.03 -1.36 6.90 41.03 0.28 -1.08 16 11 C 0.12 6.47 2.76 -11.63 -0.03 6.43 16 12 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 13 C -0.53 -28.88 8.43 25.60 0.22 -28.67 16 14 H 0.05 2.55 7.76 -2.91 -0.02 2.53 16 15 C 0.02 1.15 5.34 84.65 0.45 1.60 16 16 N -0.91 -51.57 12.57 21.45 0.27 -51.30 16 17 Si 0.95 42.76 29.54 68.60 2.03 44.78 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 19 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 C -0.07 -3.64 5.83 31.59 0.18 -3.46 16 22 C -0.02 -1.03 6.79 30.56 0.21 -0.82 16 23 H 0.07 2.24 8.02 -2.39 -0.02 2.22 16 24 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 25 H 0.12 2.64 4.31 -2.39 -0.01 2.63 16 26 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.06 1.26 5.26 -2.39 -0.01 1.24 16 29 H 0.05 1.31 8.13 -2.39 -0.02 1.29 16 30 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.16 5.75 -2.39 -0.01 1.15 16 33 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 36 H 0.04 2.27 7.91 -2.39 -0.02 2.26 16 37 H 0.06 3.22 8.02 -2.38 -0.02 3.20 16 38 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.07 2.98 8.14 -2.38 -0.02 2.96 16 Total: -1.00 -66.92 307.02 5.26 -61.66 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 1.02 Total: 11.98 kcal Atomic # 6 Polarization: -29.30 SS G_CDS: 5.44 Total: -23.85 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -3.23 Total: -94.57 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -66.92 5.26 -61.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259611312.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.244 kcal (2) G-P(sol) polarization free energy of solvation -66.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds