Wall clock time and date at job start Mon Mar 30 2020 06:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47093 * 2 1 4 4 C 1.53001 * 109.47159 * 119.99355 * 2 1 3 5 5 C 1.50709 * 109.46504 * 65.00351 * 4 2 1 6 6 N 1.30746 * 125.61787 * 305.02492 * 5 4 2 7 7 C 1.33579 * 109.14795 * 180.02562 * 6 5 4 8 8 C 1.35028 * 107.97688 * 359.95525 * 7 6 5 9 9 N 1.35312 * 125.61267 * 124.71950 * 5 4 2 10 10 H 0.97003 * 126.49807 * 0.03140 * 9 5 4 11 11 C 1.50652 * 124.45190 * 180.09938 * 8 7 6 12 12 H 1.09000 * 109.68295 * 256.68549 * 11 8 7 13 13 C 1.50707 * 109.67885 * 136.16915 * 11 8 7 14 14 H 1.07994 * 120.00034 * 275.54058 * 13 11 8 15 15 C 1.37876 * 119.99520 * 95.55076 * 13 11 8 16 16 N 1.31516 * 119.99848 * 184.95701 * 15 13 11 17 17 Si 1.86798 * 120.00419 * 4.94865 * 15 13 11 18 18 H 1.48504 * 109.47179 * 84.83071 * 17 15 13 19 19 H 1.48500 * 109.47200 * 204.83348 * 17 15 13 20 20 H 1.48500 * 109.47043 * 324.83219 * 17 15 13 21 21 C 1.53390 * 108.38393 * 16.41151 * 11 8 7 22 22 C 1.53122 * 109.44770 * 310.34989 * 21 11 8 23 23 C 1.50865 * 128.03626 * 179.85655 * 7 6 5 24 24 H 1.09001 * 109.47165 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47763 * 300.00052 * 1 2 3 26 26 H 1.09008 * 109.46928 * 60.00484 * 1 2 3 27 27 H 1.08999 * 109.47763 * 239.99948 * 2 1 3 28 28 H 1.08997 * 109.47224 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47065 * 300.00026 * 3 2 1 30 30 H 1.08999 * 109.46858 * 59.99394 * 3 2 1 31 31 H 1.08998 * 109.47478 * 305.01025 * 4 2 1 32 32 H 1.08995 * 109.47345 * 184.99981 * 4 2 1 33 33 H 0.97005 * 120.00147 * 180.02562 * 16 15 13 34 34 H 1.09008 * 109.47731 * 70.34495 * 21 11 8 35 35 H 1.09000 * 109.48104 * 190.35588 * 21 11 8 36 36 H 1.08994 * 109.46705 * 190.03026 * 22 21 11 37 37 H 1.09005 * 109.45708 * 309.99834 * 22 21 11 38 38 H 1.09006 * 109.67004 * 316.49063 * 23 7 6 39 39 H 1.09002 * 109.67493 * 77.02016 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 -2.1732 1.1889 6 7 0.4234 -2.6226 1.0331 7 6 0.4466 -3.9582 1.0270 8 6 1.7282 -4.3535 1.1841 9 7 2.4855 -3.2266 1.2813 10 1 3.4477 -3.1864 1.3976 11 6 2.1774 -5.7907 1.2283 12 1 2.3866 -6.0785 2.2586 13 6 3.4197 -5.9601 0.3919 14 1 3.3361 -6.1204 -0.6728 15 6 4.6628 -5.9105 0.9862 16 7 5.7483 -5.9604 0.2454 17 14 4.8053 -5.7723 2.8436 18 1 4.7235 -7.1261 3.4485 19 1 6.1074 -5.1508 3.1953 20 1 3.6984 -4.9301 3.3637 21 6 1.0514 -6.6671 0.6655 22 6 -0.2701 -6.2980 1.3452 23 6 -0.7164 -4.9075 0.8777 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6765 1.9563 0.8899 31 1 1.6052 -0.2617 2.1370 32 1 3.1262 -0.6442 1.2953 33 1 6.6229 -5.9259 0.6635 34 1 0.9657 -6.5032 -0.4088 35 1 1.2774 -7.7162 0.8561 36 1 -1.0317 -7.0316 1.0813 37 1 -0.1325 -6.2905 2.4265 38 1 -1.5509 -4.5645 1.4894 39 1 -1.0214 -4.9526 -0.1678 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259650553.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:49 Heat of formation + Delta-G solvation = 17.836737 kcal Electronic energy + Delta-G solvation = -18657.733714 eV Core-core repulsion = 15985.515826 eV Total energy + Delta-G solvation = -2672.217888 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.51311 -36.65723 -35.48785 -33.30419 -31.77433 -29.58529 -29.24712 -26.83512 -26.36730 -24.82192 -21.57837 -21.05859 -20.30397 -19.53872 -18.15712 -17.14917 -16.50660 -15.09808 -14.65013 -14.40933 -14.13013 -13.74999 -13.27540 -13.03697 -12.85159 -12.60540 -12.48550 -12.17663 -11.93771 -11.67239 -11.46351 -11.38538 -11.12210 -10.81994 -10.62720 -10.53468 -10.45505 -10.12207 -9.87392 -9.73542 -9.61122 -8.99312 -8.83590 -8.72843 -7.10327 -6.29055 -4.29714 2.93753 3.08867 3.18801 3.20573 3.79837 3.96302 4.18311 4.84043 5.02103 5.10565 5.12454 5.28700 5.61055 5.61204 5.66594 5.70042 5.81109 5.83424 5.97761 6.08209 6.14154 6.15657 6.23834 6.28157 6.33495 6.36483 6.41395 6.56971 6.58167 6.61517 6.79665 6.87532 6.98836 7.18752 7.28283 7.53554 7.69099 8.25342 8.33403 8.79578 8.88901 9.31302 10.83513 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019281 B = 0.008501 C = 0.006544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.881619 B = 3293.090641 C = 4278.010643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.086 4.086 3 C -0.146 4.146 4 C -0.020 4.020 5 C 0.164 3.836 6 N -0.476 5.476 7 C -0.047 4.047 8 C 0.043 3.957 9 N -0.542 5.542 10 H 0.416 0.584 11 C 0.074 3.926 12 H 0.045 0.955 13 C -0.511 4.511 14 H 0.078 0.922 15 C 0.071 3.929 16 N -0.891 5.891 17 Si 0.861 3.139 18 H -0.269 1.269 19 H -0.286 1.286 20 H -0.265 1.265 21 C -0.097 4.097 22 C -0.121 4.121 23 C -0.020 4.020 24 H 0.095 0.905 25 H 0.045 0.955 26 H 0.039 0.961 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.266 0.734 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.769 7.895 2.696 11.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.105 4.105 3 C -0.203 4.203 4 C -0.060 4.060 5 C -0.098 4.098 6 N -0.197 5.197 7 C -0.176 4.176 8 C -0.076 4.076 9 N -0.143 5.143 10 H 0.253 0.747 11 C 0.054 3.946 12 H 0.062 0.938 13 C -0.549 4.549 14 H 0.096 0.904 15 C -0.131 4.131 16 N -0.528 5.528 17 Si 0.687 3.313 18 H -0.194 1.194 19 H -0.212 1.212 20 H -0.190 1.190 21 C -0.135 4.135 22 C -0.159 4.159 23 C -0.058 4.058 24 H 0.113 0.887 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.288 8.389 2.608 12.077 hybrid contribution 1.655 -0.335 1.083 2.006 sum -6.633 8.053 3.690 11.067 Atomic orbital electron populations 1.22041 0.94285 1.04973 0.99874 1.20972 0.97202 0.94913 0.97401 1.21856 1.00656 0.96245 1.01587 1.19923 1.00176 0.86597 0.99271 1.22855 0.85989 0.90932 1.09982 1.69576 1.20166 1.10016 1.19934 1.20347 0.93855 0.90447 1.12936 1.22046 0.90494 0.91402 1.03693 1.42759 1.10543 1.06247 1.54714 0.74682 1.17954 0.95200 0.84269 0.97150 0.93759 1.20999 0.88033 1.49607 0.96253 0.90393 1.25105 0.95854 0.94690 0.97497 1.69897 0.97895 1.49652 1.35373 0.87109 0.77489 0.79804 0.86850 1.19381 1.21195 1.18970 1.21540 0.92816 0.99117 1.00031 1.21687 0.98070 0.95762 1.00421 1.19725 0.93683 0.91833 1.00562 0.88666 0.93576 0.94182 0.91319 0.92953 0.92740 0.92802 0.90248 0.91161 0.92374 0.92167 0.92022 0.92306 0.92465 0.91959 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.92 37.15 0.33 -1.84 16 2 C -0.09 -1.17 2.91 -90.62 -0.26 -1.43 16 3 C -0.15 -1.59 9.19 37.16 0.34 -1.25 16 4 C -0.02 -0.30 5.32 -27.88 -0.15 -0.45 16 5 C 0.16 3.13 7.39 -154.96 -1.15 1.98 16 6 N -0.48 -9.66 8.57 -6.94 -0.06 -9.72 16 7 C -0.05 -0.99 6.98 -82.89 -0.58 -1.57 16 8 C 0.04 0.96 6.37 -81.85 -0.52 0.44 16 9 N -0.54 -11.41 6.07 -6.53 -0.04 -11.45 16 10 H 0.42 8.55 8.77 -40.82 -0.36 8.19 16 11 C 0.07 1.69 2.13 -92.74 -0.20 1.49 16 12 H 0.04 1.03 5.31 -51.93 -0.28 0.75 16 13 C -0.51 -13.51 8.80 -34.44 -0.30 -13.81 16 14 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 15 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 16 N -0.89 -25.64 13.96 55.43 0.77 -24.86 16 17 Si 0.86 19.99 26.80 -169.99 -4.56 15.43 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.26 -5.98 6.82 56.52 0.39 -5.59 16 21 C -0.10 -1.89 5.22 -26.47 -0.14 -2.03 16 22 C -0.12 -2.01 5.90 -26.49 -0.16 -2.16 16 23 C -0.02 -0.34 6.30 -27.63 -0.17 -0.52 16 24 H 0.09 1.60 5.50 -51.93 -0.29 1.31 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.06 1.21 8.08 -51.92 -0.42 0.79 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 307.17 15.07 4.63 4.63 Total: -1.00 -29.17 307.17 -8.71 -37.88 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.41 Total: 7.42 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -3.05 Total: -19.33 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.67 Total: -46.03 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.56 Total: 15.43 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.17 -8.71 -37.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259650553.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.718 kcal (2) G-P(sol) polarization free energy of solvation -29.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds