Wall clock time and date at job start Mon Mar 30 2020 06:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47093 * 2 1 4 4 C 1.53001 * 109.47159 * 119.99355 * 2 1 3 5 5 C 1.50709 * 109.46504 * 65.00351 * 4 2 1 6 6 N 1.30746 * 125.61787 * 305.02492 * 5 4 2 7 7 C 1.33579 * 109.14795 * 180.02562 * 6 5 4 8 8 C 1.35028 * 107.97688 * 359.95525 * 7 6 5 9 9 N 1.35312 * 125.61267 * 124.71950 * 5 4 2 10 10 H 0.97003 * 126.49807 * 0.03140 * 9 5 4 11 11 C 1.50652 * 124.45190 * 180.09938 * 8 7 6 12 12 H 1.09000 * 109.68295 * 256.68549 * 11 8 7 13 13 C 1.50707 * 109.67885 * 136.16915 * 11 8 7 14 14 H 1.07994 * 120.00034 * 275.54058 * 13 11 8 15 15 C 1.37876 * 119.99520 * 95.55076 * 13 11 8 16 16 N 1.31516 * 119.99848 * 184.95701 * 15 13 11 17 17 Si 1.86798 * 120.00419 * 4.94865 * 15 13 11 18 18 H 1.48504 * 109.47179 * 84.83071 * 17 15 13 19 19 H 1.48500 * 109.47200 * 204.83348 * 17 15 13 20 20 H 1.48500 * 109.47043 * 324.83219 * 17 15 13 21 21 C 1.53390 * 108.38393 * 16.41151 * 11 8 7 22 22 C 1.53122 * 109.44770 * 310.34989 * 21 11 8 23 23 C 1.50865 * 128.03626 * 179.85655 * 7 6 5 24 24 H 1.09001 * 109.47165 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47763 * 300.00052 * 1 2 3 26 26 H 1.09008 * 109.46928 * 60.00484 * 1 2 3 27 27 H 1.08999 * 109.47763 * 239.99948 * 2 1 3 28 28 H 1.08997 * 109.47224 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47065 * 300.00026 * 3 2 1 30 30 H 1.08999 * 109.46858 * 59.99394 * 3 2 1 31 31 H 1.08998 * 109.47478 * 305.01025 * 4 2 1 32 32 H 1.08995 * 109.47345 * 184.99981 * 4 2 1 33 33 H 0.97005 * 120.00147 * 180.02562 * 16 15 13 34 34 H 1.09008 * 109.47731 * 70.34495 * 21 11 8 35 35 H 1.09000 * 109.48104 * 190.35588 * 21 11 8 36 36 H 1.08994 * 109.46705 * 190.03026 * 22 21 11 37 37 H 1.09005 * 109.45708 * 309.99834 * 22 21 11 38 38 H 1.09006 * 109.67004 * 316.49063 * 23 7 6 39 39 H 1.09002 * 109.67493 * 77.02016 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 -2.1732 1.1889 6 7 0.4234 -2.6226 1.0331 7 6 0.4466 -3.9582 1.0270 8 6 1.7282 -4.3535 1.1841 9 7 2.4855 -3.2266 1.2813 10 1 3.4477 -3.1864 1.3976 11 6 2.1774 -5.7907 1.2283 12 1 2.3866 -6.0785 2.2586 13 6 3.4197 -5.9601 0.3919 14 1 3.3361 -6.1204 -0.6728 15 6 4.6628 -5.9105 0.9862 16 7 5.7483 -5.9604 0.2454 17 14 4.8053 -5.7723 2.8436 18 1 4.7235 -7.1261 3.4485 19 1 6.1074 -5.1508 3.1953 20 1 3.6984 -4.9301 3.3637 21 6 1.0514 -6.6671 0.6655 22 6 -0.2701 -6.2980 1.3452 23 6 -0.7164 -4.9075 0.8777 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6765 1.9563 0.8899 31 1 1.6052 -0.2617 2.1370 32 1 3.1262 -0.6442 1.2953 33 1 6.6229 -5.9259 0.6635 34 1 0.9657 -6.5032 -0.4088 35 1 1.2774 -7.7162 0.8561 36 1 -1.0317 -7.0316 1.0813 37 1 -0.1325 -6.2905 2.4265 38 1 -1.5509 -4.5645 1.4894 39 1 -1.0214 -4.9526 -0.1678 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259650553.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:49 Heat of formation + Delta-G solvation = 1.929397 kcal Electronic energy + Delta-G solvation = -18658.423508 eV Core-core repulsion = 15985.515826 eV Total energy + Delta-G solvation = -2672.907682 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.07557 -38.05270 -36.77100 -35.14166 -33.56137 -31.19460 -30.62999 -27.93430 -27.70549 -26.60911 -23.11212 -22.62593 -21.77395 -20.80998 -19.72367 -19.10421 -18.12807 -16.54897 -16.21842 -15.96026 -15.49064 -15.12314 -14.84373 -14.47143 -14.32202 -14.30440 -13.84409 -13.37514 -13.18078 -13.04296 -12.95778 -12.93134 -12.65893 -12.10763 -12.01918 -11.81080 -11.72577 -11.58521 -11.51509 -11.43408 -11.29002 -10.82985 -10.56849 -10.36369 -8.70561 -8.38481 -6.43477 1.21469 1.28019 1.34071 1.39054 2.21162 2.25109 2.42456 2.96745 3.50352 3.96351 4.02411 4.08542 4.17460 4.23710 4.39284 4.59868 4.60666 4.66648 4.71660 4.78045 4.83414 4.91167 4.93898 4.94928 5.10585 5.12438 5.15145 5.19081 5.29697 5.34310 5.39761 5.51146 5.56937 5.61627 5.69335 5.78067 6.11500 6.24735 6.61535 6.72469 7.20755 7.32000 8.78079 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019281 B = 0.008501 C = 0.006544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.881619 B = 3293.090641 C = 4278.010643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.083 4.083 3 C -0.139 4.139 4 C -0.023 4.023 5 C 0.173 3.827 6 N -0.489 5.489 7 C -0.050 4.050 8 C 0.003 3.997 9 N -0.554 5.554 10 H 0.413 0.587 11 C 0.075 3.925 12 H 0.043 0.957 13 C -0.510 4.510 14 H 0.031 0.969 15 C 0.024 3.976 16 N -0.939 5.939 17 Si 0.927 3.073 18 H -0.262 1.262 19 H -0.282 1.282 20 H -0.254 1.254 21 C -0.097 4.097 22 C -0.110 4.110 23 C -0.021 4.021 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.268 0.732 34 H 0.044 0.956 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.185 9.179 4.358 13.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.103 4.103 3 C -0.196 4.196 4 C -0.062 4.062 5 C -0.089 4.089 6 N -0.209 5.209 7 C -0.179 4.179 8 C -0.115 4.115 9 N -0.154 5.154 10 H 0.251 0.749 11 C 0.055 3.945 12 H 0.061 0.939 13 C -0.548 4.548 14 H 0.050 0.950 15 C -0.174 4.174 16 N -0.579 5.579 17 Si 0.751 3.249 18 H -0.187 1.187 19 H -0.208 1.208 20 H -0.178 1.178 21 C -0.135 4.135 22 C -0.148 4.148 23 C -0.059 4.059 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.732 9.661 4.267 14.361 hybrid contribution 2.066 -0.679 0.447 2.221 sum -7.665 8.981 4.715 12.714 Atomic orbital electron populations 1.21967 0.94461 1.03373 1.00978 1.20950 0.97012 0.96501 0.95828 1.21793 1.01054 0.94055 1.02735 1.20183 1.01360 0.83999 1.00611 1.23782 0.85510 0.92269 1.07353 1.69713 1.20645 1.09721 1.20858 1.20967 0.94422 0.91221 1.11251 1.21987 0.91476 0.91260 1.06781 1.42913 1.10607 1.06667 1.55230 0.74933 1.17900 0.94579 0.85754 0.96262 0.93930 1.21107 0.90182 1.48985 0.94576 0.95045 1.25813 0.95197 0.94277 1.02145 1.70039 0.98586 1.51628 1.37600 0.86040 0.77729 0.80144 0.80967 1.18679 1.20807 1.17823 1.21506 0.93772 0.98904 0.99295 1.21622 0.96926 0.96068 1.00171 1.19876 0.93075 0.91579 1.01400 0.91490 0.92502 0.93065 0.93517 0.92321 0.91888 0.91383 0.88348 0.89716 0.92245 0.93668 0.91321 0.88770 0.92045 0.90027 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 8.92 71.98 0.64 -3.31 16 2 C -0.08 -2.13 2.91 -10.79 -0.03 -2.17 16 3 C -0.14 -2.63 9.19 71.98 0.66 -1.97 16 4 C -0.02 -0.62 5.32 29.85 0.16 -0.46 16 5 C 0.17 6.44 7.39 137.97 1.02 7.46 16 6 N -0.49 -19.33 8.57 -175.88 -1.51 -20.83 16 7 C -0.05 -2.05 6.98 41.61 0.29 -1.76 16 8 C 0.00 0.15 6.37 41.14 0.26 0.42 16 9 N -0.55 -23.19 6.07 -174.58 -1.06 -24.25 16 10 H 0.41 17.08 8.77 -92.71 -0.81 16.27 16 11 C 0.07 3.43 2.13 -12.17 -0.03 3.40 16 12 H 0.04 1.94 5.31 -2.39 -0.01 1.93 16 13 C -0.51 -27.95 8.80 25.60 0.23 -27.72 16 14 H 0.03 1.96 8.06 -2.91 -0.02 1.93 16 15 C 0.02 1.32 5.47 84.65 0.46 1.78 16 16 N -0.94 -55.78 13.96 21.45 0.30 -55.48 16 17 Si 0.93 41.57 26.80 68.60 1.84 43.41 16 18 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 20 H -0.25 -10.86 6.82 99.48 0.68 -10.18 16 21 C -0.10 -3.72 5.22 30.77 0.16 -3.56 16 22 C -0.11 -3.36 5.90 30.75 0.18 -3.18 16 23 C -0.02 -0.69 6.30 30.01 0.19 -0.50 16 24 H 0.07 2.17 5.50 -2.39 -0.01 2.16 16 25 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 34 H 0.04 1.84 8.08 -2.38 -0.02 1.82 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.06 1.85 8.12 -2.38 -0.02 1.83 16 38 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 39 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -64.49 307.17 3.95 -60.53 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 0.19 Total: 28.19 kcal Atomic # 6 Polarization: -35.77 SS G_CDS: 4.20 Total: -31.57 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -2.27 Total: -100.56 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 1.84 Total: 43.41 kcal Total: -64.49 3.95 -60.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259650553.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.463 kcal (2) G-P(sol) polarization free energy of solvation -64.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds