Wall clock time and date at job start Mon Mar 30 2020 06:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47631 * 2 1 4 4 C 1.53003 * 109.47142 * 120.00345 * 2 1 3 5 5 C 1.50704 * 109.47453 * 64.99477 * 4 2 1 6 6 N 1.30747 * 125.61427 * 304.96472 * 5 4 2 7 7 C 1.33584 * 109.14737 * 180.02562 * 6 5 4 8 8 C 1.35022 * 107.97440 * 0.04802 * 7 6 5 9 9 N 1.35308 * 125.61433 * 125.00125 * 5 4 2 10 10 H 0.96996 * 126.49676 * 0.20123 * 9 5 4 11 11 C 1.50649 * 124.45304 * 179.85430 * 8 7 6 12 12 H 1.09005 * 109.68824 * 103.37323 * 11 8 7 13 13 C 1.50703 * 109.68370 * 223.92520 * 11 8 7 14 14 H 1.08001 * 119.99685 * 35.05803 * 13 11 8 15 15 C 1.37878 * 120.00613 * 215.05772 * 13 11 8 16 16 N 1.31515 * 119.99626 * 5.07490 * 15 13 11 17 17 Si 1.86793 * 120.00402 * 185.07828 * 15 13 11 18 18 H 1.48497 * 109.47209 * 59.99801 * 17 15 13 19 19 H 1.48504 * 109.47237 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46818 * 299.99924 * 17 15 13 21 21 C 1.53395 * 108.38667 * 343.65283 * 11 8 7 22 22 C 1.53122 * 109.44851 * 49.62213 * 21 11 8 23 23 C 1.50861 * 128.03277 * 180.14953 * 7 6 5 24 24 H 1.08998 * 109.46863 * 299.99829 * 1 2 3 25 25 H 1.08998 * 109.46669 * 60.00046 * 1 2 3 26 26 H 1.08997 * 109.47409 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47276 * 239.99935 * 2 1 3 28 28 H 1.09002 * 109.47699 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47072 * 300.00492 * 3 2 1 30 30 H 1.09003 * 109.46844 * 59.99670 * 3 2 1 31 31 H 1.09001 * 109.46822 * 304.99850 * 4 2 1 32 32 H 1.09000 * 109.47384 * 185.00047 * 4 2 1 33 33 H 0.96996 * 120.00189 * 180.02562 * 16 15 13 34 34 H 1.09003 * 109.47372 * 289.62928 * 21 11 8 35 35 H 1.08997 * 109.48264 * 169.61912 * 21 11 8 36 36 H 1.09002 * 109.46237 * 169.96299 * 22 21 11 37 37 H 1.09003 * 109.45167 * 49.98870 * 22 21 11 38 38 H 1.08998 * 109.67901 * 282.99269 * 23 7 6 39 39 H 1.09004 * 109.67632 * 43.49145 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 -2.1734 1.1889 6 7 0.4232 -2.6227 1.0343 7 6 0.4463 -3.9583 1.0278 8 6 1.7277 -4.3536 1.1855 9 7 2.4848 -3.2269 1.2865 10 1 3.4461 -3.1867 1.4096 11 6 2.1763 -5.7909 1.2347 12 1 2.6337 -6.0657 0.2842 13 6 3.1734 -5.9736 2.3499 14 1 3.0691 -5.4098 3.2652 15 6 4.2187 -6.8604 2.2019 16 7 4.4040 -7.4723 1.0526 17 14 5.3716 -7.1927 3.6335 18 1 4.5968 -7.7390 4.7765 19 1 6.4042 -8.1763 3.2195 20 1 6.0306 -5.9263 4.0425 21 6 0.9476 -6.6728 1.4907 22 6 -0.1661 -6.2921 0.5111 23 6 -0.7162 -4.9073 0.8735 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9562 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6054 -0.2618 2.1369 32 1 3.1263 -0.6444 1.2952 33 1 5.1391 -8.0965 0.9485 34 1 0.5994 -6.5232 2.5127 35 1 1.2152 -7.7196 1.3476 36 1 -0.9681 -7.0281 0.5692 37 1 0.2339 -6.2701 -0.5026 38 1 -1.2692 -4.9658 1.8110 39 1 -1.3753 -4.5544 0.0802 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259650560.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:52 Heat of formation + Delta-G solvation = 14.588572 kcal Electronic energy + Delta-G solvation = -18405.863800 eV Core-core repulsion = 15733.505061 eV Total energy + Delta-G solvation = -2672.358739 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.45250 -36.56567 -35.40565 -33.21427 -31.68973 -29.40842 -28.89090 -26.85746 -26.22778 -24.80696 -21.55653 -21.04168 -20.40693 -19.50617 -17.99692 -16.82421 -16.24016 -15.05707 -14.65049 -14.60664 -13.99356 -13.52532 -13.35601 -12.76743 -12.73134 -12.52887 -12.33447 -12.12814 -11.86859 -11.55143 -11.25108 -11.11494 -11.01374 -10.74289 -10.68219 -10.53816 -10.46874 -10.14812 -9.93736 -9.67521 -9.30613 -8.89827 -8.69298 -8.61157 -7.07290 -6.17277 -4.24181 2.99429 3.20513 3.27020 3.30121 3.83958 3.98671 4.30565 4.86443 5.07679 5.09939 5.11586 5.29184 5.64860 5.69872 5.76623 5.81142 5.83587 5.87840 5.98784 6.06361 6.14286 6.26288 6.33225 6.37409 6.46822 6.51019 6.56168 6.64162 6.80168 6.86635 6.97350 7.02462 7.23585 7.54010 7.62514 7.74604 7.77263 8.22240 8.33142 8.83433 8.95050 9.41390 10.89293 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.022941 B = 0.006632 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.234394 B = 4220.639116 C = 5148.752202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.085 4.085 3 C -0.146 4.146 4 C -0.019 4.019 5 C 0.159 3.841 6 N -0.477 5.477 7 C -0.050 4.050 8 C 0.050 3.950 9 N -0.546 5.546 10 H 0.417 0.583 11 C 0.097 3.903 12 H 0.074 0.926 13 C -0.520 4.520 14 H 0.053 0.947 15 C 0.069 3.931 16 N -0.888 5.888 17 Si 0.892 3.108 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.278 1.278 21 C -0.097 4.097 22 C -0.121 4.121 23 C -0.019 4.019 24 H 0.046 0.954 25 H 0.039 0.961 26 H 0.095 0.905 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.265 0.735 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.254 10.069 -1.628 11.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.104 4.104 3 C -0.204 4.204 4 C -0.058 4.058 5 C -0.103 4.103 6 N -0.197 5.197 7 C -0.178 4.178 8 C -0.069 4.069 9 N -0.147 5.147 10 H 0.254 0.746 11 C 0.078 3.922 12 H 0.092 0.908 13 C -0.559 4.559 14 H 0.072 0.928 15 C -0.134 4.134 16 N -0.526 5.526 17 Si 0.720 3.280 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.203 1.203 21 C -0.136 4.136 22 C -0.159 4.159 23 C -0.057 4.057 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.114 0.886 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.872 10.424 -1.813 11.649 hybrid contribution 1.981 -0.677 1.001 2.321 sum -2.891 9.748 -0.812 10.200 Atomic orbital electron populations 1.22048 0.94283 1.05042 0.99900 1.20968 0.97235 0.94860 0.97350 1.21860 1.00574 0.96318 1.01633 1.19897 1.00039 0.86686 0.99181 1.22828 0.86070 0.90896 1.10467 1.69570 1.20106 1.10166 1.19897 1.20377 0.94125 0.90295 1.12983 1.22093 0.90829 0.91381 1.02623 1.42753 1.10690 1.06210 1.55096 0.74565 1.17702 0.92899 0.82047 0.99580 0.90849 1.20964 1.09585 1.24373 1.00927 0.92839 1.24991 0.97158 0.95673 0.95584 1.69892 1.31159 1.28282 1.23221 0.86653 0.80358 0.78178 0.82818 1.19996 1.21139 1.20325 1.21671 0.94509 1.00030 0.97378 1.21697 0.98596 0.95235 1.00365 1.19730 0.93451 0.92174 1.00388 0.93527 0.94216 0.88618 0.91521 0.93006 0.92782 0.92747 0.90281 0.91228 0.92533 0.93318 0.92244 0.92864 0.92462 0.92133 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 8.92 37.16 0.33 -1.79 16 2 C -0.08 -1.09 2.91 -90.62 -0.26 -1.36 16 3 C -0.15 -1.49 9.19 37.15 0.34 -1.15 16 4 C -0.02 -0.26 5.32 -27.88 -0.15 -0.41 16 5 C 0.16 2.93 7.39 -154.97 -1.15 1.78 16 6 N -0.48 -9.65 8.58 -6.95 -0.06 -9.71 16 7 C -0.05 -1.06 6.98 -82.89 -0.58 -1.64 16 8 C 0.05 1.11 6.37 -81.86 -0.52 0.59 16 9 N -0.55 -10.93 6.08 -6.53 -0.04 -10.97 16 10 H 0.42 7.70 8.96 -40.82 -0.37 7.34 16 11 C 0.10 2.35 2.64 -92.74 -0.24 2.11 16 12 H 0.07 1.97 7.24 -51.93 -0.38 1.60 16 13 C -0.52 -13.56 8.25 -34.44 -0.28 -13.84 16 14 H 0.05 1.42 7.82 -52.49 -0.41 1.01 16 15 C 0.07 1.82 5.45 -17.82 -0.10 1.72 16 16 N -0.89 -24.44 12.77 55.43 0.71 -23.73 16 17 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 C -0.10 -2.12 5.22 -26.46 -0.14 -2.26 16 22 C -0.12 -2.23 5.90 -26.49 -0.16 -2.39 16 23 C -0.02 -0.35 6.30 -27.62 -0.17 -0.53 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.10 1.58 5.50 -51.93 -0.29 1.29 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.08 8.11 -51.93 -0.42 0.65 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 310.85 15.07 4.68 4.68 Total: -1.00 -28.23 310.85 -9.29 -37.52 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.49 Total: 5.95 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -3.08 Total: -19.15 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.61 Total: -44.40 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.23 -9.29 -37.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259650560.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.113 kcal (2) G-P(sol) polarization free energy of solvation -28.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds