Wall clock time and date at job start Mon Mar 30 2020 06:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47631 * 2 1 4 4 C 1.53003 * 109.47142 * 120.00345 * 2 1 3 5 5 C 1.50704 * 109.47453 * 64.99477 * 4 2 1 6 6 N 1.30747 * 125.61427 * 304.96472 * 5 4 2 7 7 C 1.33584 * 109.14737 * 180.02562 * 6 5 4 8 8 C 1.35022 * 107.97440 * 0.04802 * 7 6 5 9 9 N 1.35308 * 125.61433 * 125.00125 * 5 4 2 10 10 H 0.96996 * 126.49676 * 0.20123 * 9 5 4 11 11 C 1.50649 * 124.45304 * 179.85430 * 8 7 6 12 12 H 1.09005 * 109.68824 * 103.37323 * 11 8 7 13 13 C 1.50703 * 109.68370 * 223.92520 * 11 8 7 14 14 H 1.08001 * 119.99685 * 35.05803 * 13 11 8 15 15 C 1.37878 * 120.00613 * 215.05772 * 13 11 8 16 16 N 1.31515 * 119.99626 * 5.07490 * 15 13 11 17 17 Si 1.86793 * 120.00402 * 185.07828 * 15 13 11 18 18 H 1.48497 * 109.47209 * 59.99801 * 17 15 13 19 19 H 1.48504 * 109.47237 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46818 * 299.99924 * 17 15 13 21 21 C 1.53395 * 108.38667 * 343.65283 * 11 8 7 22 22 C 1.53122 * 109.44851 * 49.62213 * 21 11 8 23 23 C 1.50861 * 128.03277 * 180.14953 * 7 6 5 24 24 H 1.08998 * 109.46863 * 299.99829 * 1 2 3 25 25 H 1.08998 * 109.46669 * 60.00046 * 1 2 3 26 26 H 1.08997 * 109.47409 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47276 * 239.99935 * 2 1 3 28 28 H 1.09002 * 109.47699 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47072 * 300.00492 * 3 2 1 30 30 H 1.09003 * 109.46844 * 59.99670 * 3 2 1 31 31 H 1.09001 * 109.46822 * 304.99850 * 4 2 1 32 32 H 1.09000 * 109.47384 * 185.00047 * 4 2 1 33 33 H 0.96996 * 120.00189 * 180.02562 * 16 15 13 34 34 H 1.09003 * 109.47372 * 289.62928 * 21 11 8 35 35 H 1.08997 * 109.48264 * 169.61912 * 21 11 8 36 36 H 1.09002 * 109.46237 * 169.96299 * 22 21 11 37 37 H 1.09003 * 109.45167 * 49.98870 * 22 21 11 38 38 H 1.08998 * 109.67901 * 282.99269 * 23 7 6 39 39 H 1.09004 * 109.67632 * 43.49145 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 -2.1734 1.1889 6 7 0.4232 -2.6227 1.0343 7 6 0.4463 -3.9583 1.0278 8 6 1.7277 -4.3536 1.1855 9 7 2.4848 -3.2269 1.2865 10 1 3.4461 -3.1867 1.4096 11 6 2.1763 -5.7909 1.2347 12 1 2.6337 -6.0657 0.2842 13 6 3.1734 -5.9736 2.3499 14 1 3.0691 -5.4098 3.2652 15 6 4.2187 -6.8604 2.2019 16 7 4.4040 -7.4723 1.0526 17 14 5.3716 -7.1927 3.6335 18 1 4.5968 -7.7390 4.7765 19 1 6.4042 -8.1763 3.2195 20 1 6.0306 -5.9263 4.0425 21 6 0.9476 -6.6728 1.4907 22 6 -0.1661 -6.2921 0.5111 23 6 -0.7162 -4.9073 0.8735 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9562 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6054 -0.2618 2.1369 32 1 3.1263 -0.6444 1.2952 33 1 5.1391 -8.0965 0.9485 34 1 0.5994 -6.5232 2.5127 35 1 1.2152 -7.7196 1.3476 36 1 -0.9681 -7.0281 0.5692 37 1 0.2339 -6.2701 -0.5026 38 1 -1.2692 -4.9658 1.8110 39 1 -1.3753 -4.5544 0.0802 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259650560.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:51 Heat of formation + Delta-G solvation = 0.529579 kcal Electronic energy + Delta-G solvation = -18406.473443 eV Core-core repulsion = 15733.505061 eV Total energy + Delta-G solvation = -2672.968383 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.02112 -37.97393 -36.74064 -35.04652 -33.42165 -30.88575 -30.47576 -27.88871 -27.62511 -26.64967 -23.19788 -22.68228 -21.79577 -20.73763 -19.60296 -18.67058 -18.00646 -16.48742 -16.33047 -15.98971 -15.34582 -14.89916 -14.59085 -14.49171 -14.38764 -14.13107 -13.70454 -13.22095 -13.03430 -12.97148 -12.85017 -12.80687 -12.60988 -12.26019 -12.02678 -11.95015 -11.69144 -11.53795 -11.52620 -11.30910 -11.16634 -10.65634 -10.48671 -10.29731 -8.72741 -8.17086 -6.32029 1.36437 1.38350 1.42840 1.48457 2.26527 2.39006 2.47558 3.08969 3.52957 4.01841 4.05592 4.12272 4.23629 4.32496 4.44704 4.66148 4.70254 4.71007 4.78109 4.89744 4.94563 4.96657 4.97379 5.03224 5.15070 5.19847 5.21103 5.27940 5.33905 5.40344 5.51309 5.54696 5.57144 5.74248 5.78552 5.87834 6.12418 6.29215 6.77792 6.82388 7.33432 7.38480 8.87192 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.022941 B = 0.006632 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.234394 B = 4220.639116 C = 5148.752202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.081 4.081 3 C -0.140 4.140 4 C -0.020 4.020 5 C 0.175 3.825 6 N -0.492 5.492 7 C -0.054 4.054 8 C 0.010 3.990 9 N -0.551 5.551 10 H 0.420 0.580 11 C 0.100 3.900 12 H 0.036 0.964 13 C -0.527 4.527 14 H 0.044 0.956 15 C 0.024 3.976 16 N -0.920 5.920 17 Si 0.953 3.047 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.270 1.270 21 C -0.092 4.092 22 C -0.110 4.110 23 C -0.018 4.018 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.265 0.735 34 H 0.044 0.956 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.602 11.787 -1.050 12.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.101 4.101 3 C -0.197 4.197 4 C -0.059 4.059 5 C -0.087 4.087 6 N -0.212 5.212 7 C -0.183 4.183 8 C -0.108 4.108 9 N -0.152 5.152 10 H 0.258 0.742 11 C 0.080 3.920 12 H 0.054 0.946 13 C -0.565 4.565 14 H 0.062 0.938 15 C -0.176 4.176 16 N -0.558 5.558 17 Si 0.778 3.222 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.195 1.195 21 C -0.131 4.131 22 C -0.148 4.148 23 C -0.056 4.056 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.103 0.897 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.225 12.142 -1.231 13.276 hybrid contribution 2.060 -1.118 0.797 2.476 sum -3.165 11.024 -0.435 11.478 Atomic orbital electron populations 1.21988 0.94864 1.03336 1.00855 1.20940 0.96694 0.96477 0.95987 1.21797 1.01198 0.94117 1.02589 1.20168 1.01610 0.83741 1.00397 1.23794 0.85430 0.92323 1.07197 1.69705 1.20912 1.09511 1.21112 1.20881 0.94464 0.91231 1.11677 1.21863 0.91864 0.91108 1.06007 1.42830 1.11019 1.06150 1.55226 0.74162 1.17496 0.93343 0.84062 0.97103 0.94597 1.21148 1.10271 1.24109 1.00996 0.93751 1.25685 0.98658 0.95513 0.97752 1.70013 1.31884 1.29016 1.24929 0.85694 0.78475 0.78201 0.79802 1.19806 1.20813 1.19523 1.21531 0.94931 0.98539 0.98098 1.21600 0.98196 0.96298 0.98709 1.19816 0.92893 0.91338 1.01558 0.92865 0.93011 0.91522 0.92952 0.92011 0.91930 0.91733 0.88923 0.89115 0.92566 0.93756 0.93912 0.89671 0.93207 0.91083 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 8.92 71.98 0.64 -3.24 16 2 C -0.08 -1.91 2.91 -10.79 -0.03 -1.95 16 3 C -0.14 -2.39 9.19 71.98 0.66 -1.72 16 4 C -0.02 -0.52 5.32 29.85 0.16 -0.36 16 5 C 0.17 6.29 7.39 137.97 1.02 7.31 16 6 N -0.49 -19.52 8.58 -175.89 -1.51 -21.02 16 7 C -0.05 -2.30 6.98 41.60 0.29 -2.01 16 8 C 0.01 0.45 6.37 41.14 0.26 0.71 16 9 N -0.55 -22.09 6.08 -174.59 -1.06 -23.15 16 10 H 0.42 15.67 8.96 -92.71 -0.83 14.84 16 11 C 0.10 4.98 2.64 -12.17 -0.03 4.95 16 12 H 0.04 2.04 7.24 -2.38 -0.02 2.02 16 13 C -0.53 -28.12 8.25 25.60 0.21 -27.91 16 14 H 0.04 2.40 7.82 -2.91 -0.02 2.37 16 15 C 0.02 1.27 5.45 84.65 0.46 1.73 16 16 N -0.92 -51.96 12.77 21.45 0.27 -51.69 16 17 Si 0.95 42.20 29.54 68.60 2.03 44.23 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 21 C -0.09 -4.10 5.22 30.77 0.16 -3.94 16 22 C -0.11 -3.99 5.90 30.75 0.18 -3.81 16 23 C -0.02 -0.64 6.30 30.02 0.19 -0.45 16 24 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 2.12 5.50 -2.39 -0.01 2.11 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 34 H 0.04 1.96 8.08 -2.39 -0.02 1.94 16 35 H 0.04 1.98 8.14 -2.39 -0.02 1.97 16 36 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.05 1.87 8.11 -2.39 -0.02 1.85 16 38 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.08 2.51 8.14 -2.38 -0.02 2.50 16 Total: -1.00 -61.39 310.85 4.10 -57.29 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: 0.19 Total: 25.04 kcal Atomic # 6 Polarization: -34.87 SS G_CDS: 4.18 Total: -30.69 kcal Atomic # 7 Polarization: -93.56 SS G_CDS: -2.30 Total: -95.86 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -61.39 4.10 -57.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259650560.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.817 kcal (2) G-P(sol) polarization free energy of solvation -61.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds