Wall clock time and date at job start Mon Mar 30 2020 06:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46826 * 2 1 4 4 C 1.53002 * 109.47244 * 119.99945 * 2 1 3 5 5 C 1.50703 * 109.46606 * 175.00232 * 4 2 1 6 6 N 1.30750 * 125.61653 * 304.99334 * 5 4 2 7 7 C 1.33577 * 109.14470 * 179.97438 * 6 5 4 8 8 C 1.35024 * 107.98231 * 0.05905 * 7 6 5 9 9 N 1.35316 * 125.61509 * 125.00942 * 5 4 2 10 10 H 0.96995 * 126.49673 * 359.97107 * 9 5 4 11 11 C 1.50652 * 124.45645 * 179.97438 * 8 7 6 12 12 C 1.53399 * 108.41426 * 343.58783 * 11 8 7 13 13 C 1.53182 * 109.40938 * 49.62148 * 12 11 8 14 14 H 1.09006 * 109.45173 * 50.03436 * 13 12 11 15 15 C 1.50700 * 109.44054 * 169.99135 * 13 12 11 16 16 H 1.08001 * 120.00081 * 0.07794 * 15 13 12 17 17 C 1.37879 * 120.00012 * 180.02562 * 15 13 12 18 18 N 1.31519 * 119.99814 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 120.00379 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46847 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47558 * 119.99976 * 19 17 15 22 22 H 1.48496 * 109.47322 * 240.00352 * 19 17 15 23 23 C 1.50871 * 128.03358 * 180.17075 * 7 6 5 24 24 H 1.09000 * 109.47067 * 299.99258 * 1 2 3 25 25 H 1.08992 * 109.47334 * 59.99640 * 1 2 3 26 26 H 1.08998 * 109.46887 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47240 * 240.00514 * 2 1 3 28 28 H 1.09006 * 109.47335 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47256 * 300.00001 * 3 2 1 30 30 H 1.09003 * 109.47189 * 60.00435 * 3 2 1 31 31 H 1.08997 * 109.46736 * 55.00365 * 4 2 1 32 32 H 1.08995 * 109.47302 * 295.00140 * 4 2 1 33 33 H 1.09002 * 109.68231 * 103.32932 * 11 8 7 34 34 H 1.08999 * 109.68240 * 223.84597 * 11 8 7 35 35 H 1.08998 * 109.47659 * 169.65162 * 12 11 8 36 36 H 1.09004 * 109.47769 * 289.66665 * 12 11 8 37 37 H 0.96998 * 119.99997 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.67088 * 282.96298 * 23 7 6 39 39 H 1.08999 * 109.67500 * 43.45974 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5420 -0.8293 1.1888 6 7 4.2285 -1.3584 0.2099 7 6 5.5310 -1.2806 0.4962 8 6 5.6582 -0.6814 1.6994 9 7 4.4022 -0.3949 2.1388 10 1 4.1680 0.0387 2.9742 11 6 6.9739 -0.4065 2.3799 12 6 8.0553 -1.2616 1.7072 13 6 7.9715 -1.0855 0.1878 14 1 7.9494 -0.0228 -0.0538 15 6 9.1751 -1.7223 -0.4580 16 1 9.9236 -2.2051 0.1528 17 6 9.3201 -1.6895 -1.8288 18 7 8.4083 -1.1020 -2.5726 19 14 10.8114 -2.4794 -2.6295 20 1 11.6818 -3.0696 -1.5809 21 1 10.3661 -3.5468 -3.5609 22 1 11.5719 -1.4504 -3.3831 23 6 6.6957 -1.7564 -0.3364 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6055 -1.7198 1.2951 32 1 1.7517 -0.1584 2.1370 33 1 7.2256 0.6493 2.2795 34 1 6.9030 -0.6681 3.4356 35 1 9.0382 -0.9457 2.0569 36 1 7.8992 -2.3103 1.9604 37 1 8.5105 -1.0786 -3.5369 38 1 6.7880 -2.8393 -0.2533 39 1 6.5385 -1.4804 -1.3791 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259672241.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:58 Heat of formation + Delta-G solvation = 17.573319 kcal Electronic energy + Delta-G solvation = -18242.881073 eV Core-core repulsion = 15570.651763 eV Total energy + Delta-G solvation = -2672.229311 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.66080 -36.65033 -35.58227 -32.60735 -32.13726 -29.50635 -28.64293 -27.11844 -26.61517 -24.34014 -22.01513 -20.90344 -20.63874 -19.45903 -17.90156 -16.89414 -16.13158 -15.16085 -14.92728 -14.46647 -14.03031 -13.76160 -13.43216 -12.86720 -12.56733 -12.51236 -12.29982 -12.21917 -11.91901 -11.61148 -11.23555 -11.09095 -10.88980 -10.88603 -10.69351 -10.60243 -10.45147 -10.27866 -9.75025 -9.40039 -9.08745 -8.82728 -8.75063 -8.29693 -7.25738 -5.91490 -3.98151 2.60946 3.35139 3.43305 3.46594 3.54606 3.83833 4.49829 4.72647 4.88794 4.99236 5.21958 5.39735 5.40038 5.50497 5.60056 5.68759 5.73358 5.76449 5.87894 5.88641 5.98917 6.09080 6.16244 6.27622 6.37053 6.39771 6.49949 6.65964 6.77567 6.89229 7.11944 7.18907 7.47948 7.56210 7.81937 7.99344 8.05671 8.21219 8.50129 8.83692 9.06429 9.66741 11.14824 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.030910 B = 0.005437 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.652680 B = 5148.227652 C = 5747.277712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.144 4.144 4 C -0.020 4.020 5 C 0.182 3.818 6 N -0.480 5.480 7 C 0.033 3.967 8 C -0.043 4.043 9 N -0.566 5.566 10 H 0.407 0.593 11 C -0.037 4.037 12 C -0.104 4.104 13 C 0.052 3.948 14 H 0.028 0.972 15 C -0.516 4.516 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.889 3.111 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.285 1.285 23 C -0.027 4.027 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.260 0.740 38 H 0.051 0.949 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.357 3.433 9.235 15.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.202 4.202 4 C -0.059 4.059 5 C -0.080 4.080 6 N -0.200 5.200 7 C -0.097 4.097 8 C -0.157 4.157 9 N -0.170 5.170 10 H 0.243 0.757 11 C -0.075 4.075 12 C -0.142 4.142 13 C 0.033 3.967 14 H 0.046 0.954 15 C -0.554 4.554 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.525 5.525 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.066 4.066 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.105 0.895 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.705 3.102 8.288 15.484 hybrid contribution 0.923 0.208 0.689 1.171 sum -11.782 3.310 8.978 15.178 Atomic orbital electron populations 1.21838 0.95221 1.01665 1.01561 1.21056 0.94871 0.96399 0.98573 1.21814 1.01692 0.95683 1.00983 1.19947 0.85747 1.01531 0.98681 1.23072 0.93853 1.03299 0.87750 1.69939 1.04427 1.20429 1.25247 1.21511 0.92273 1.01625 0.94261 1.21095 0.85938 1.09462 0.99216 1.42754 1.06662 1.48449 1.19122 0.75673 1.20127 0.89627 1.00665 0.97122 1.21686 0.95450 0.97931 0.99154 1.18733 0.92827 0.96728 0.88422 0.95431 1.21202 1.06107 1.36417 0.91669 0.92485 1.24991 0.96155 0.95250 0.97497 1.69928 1.33873 1.43539 1.05148 0.86584 0.83113 0.79142 0.79435 1.19829 1.21054 1.21141 1.20279 0.88272 0.98281 0.99730 0.93021 0.92556 0.92612 0.89530 0.92425 0.92791 0.93410 0.89935 0.91297 0.91565 0.92770 0.92329 0.93027 0.93038 0.93007 0.88343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.19 37.16 0.34 -1.01 16 2 C -0.09 -1.09 2.89 -90.62 -0.26 -1.35 16 3 C -0.14 -1.79 9.01 37.16 0.33 -1.45 16 4 C -0.02 -0.24 5.32 -27.88 -0.15 -0.39 16 5 C 0.18 3.07 6.42 -154.96 -0.99 2.08 16 6 N -0.48 -10.31 11.15 -6.94 -0.08 -10.39 16 7 C 0.03 0.75 6.98 -82.89 -0.58 0.17 16 8 C -0.04 -0.84 7.08 -81.86 -0.58 -1.42 16 9 N -0.57 -8.93 6.15 -6.53 -0.04 -8.97 16 10 H 0.41 4.74 8.96 -40.82 -0.37 4.38 16 11 C -0.04 -0.65 6.30 -27.70 -0.17 -0.82 16 12 C -0.10 -2.15 5.16 -26.43 -0.14 -2.29 16 13 C 0.05 1.31 2.07 -91.48 -0.19 1.12 16 14 H 0.03 0.76 8.12 -51.93 -0.42 0.34 16 15 C -0.52 -14.16 8.53 -34.44 -0.29 -14.46 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 18 N -0.89 -25.83 11.46 55.43 0.64 -25.19 16 19 Si 0.89 21.40 29.54 -169.99 -5.02 16.37 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 C -0.03 -0.69 5.19 -27.60 -0.14 -0.83 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.09 1.28 8.07 -51.93 -0.42 0.86 16 28 H 0.06 0.88 7.38 -51.93 -0.38 0.50 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 1.15 8.11 -51.93 -0.42 0.73 16 36 H 0.05 1.06 8.12 -51.93 -0.42 0.64 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.05 1.35 8.12 -51.93 -0.42 0.93 16 39 H 0.10 2.82 6.44 -51.93 -0.33 2.48 16 LS Contribution 311.69 15.07 4.70 4.70 Total: -1.00 -31.02 311.69 -9.26 -40.28 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.53 Total: 2.21 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -2.92 Total: -19.00 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: 0.52 Total: -44.55 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.02 -9.26 -40.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259672241.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.853 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds