Wall clock time and date at job start Mon Mar 30 2020 06:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46826 * 2 1 4 4 C 1.53002 * 109.47244 * 119.99945 * 2 1 3 5 5 C 1.50703 * 109.46606 * 175.00232 * 4 2 1 6 6 N 1.30750 * 125.61653 * 304.99334 * 5 4 2 7 7 C 1.33577 * 109.14470 * 179.97438 * 6 5 4 8 8 C 1.35024 * 107.98231 * 0.05905 * 7 6 5 9 9 N 1.35316 * 125.61509 * 125.00942 * 5 4 2 10 10 H 0.96995 * 126.49673 * 359.97107 * 9 5 4 11 11 C 1.50652 * 124.45645 * 179.97438 * 8 7 6 12 12 C 1.53399 * 108.41426 * 343.58783 * 11 8 7 13 13 C 1.53182 * 109.40938 * 49.62148 * 12 11 8 14 14 H 1.09006 * 109.45173 * 50.03436 * 13 12 11 15 15 C 1.50700 * 109.44054 * 169.99135 * 13 12 11 16 16 H 1.08001 * 120.00081 * 0.07794 * 15 13 12 17 17 C 1.37879 * 120.00012 * 180.02562 * 15 13 12 18 18 N 1.31519 * 119.99814 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 120.00379 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46847 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47558 * 119.99976 * 19 17 15 22 22 H 1.48496 * 109.47322 * 240.00352 * 19 17 15 23 23 C 1.50871 * 128.03358 * 180.17075 * 7 6 5 24 24 H 1.09000 * 109.47067 * 299.99258 * 1 2 3 25 25 H 1.08992 * 109.47334 * 59.99640 * 1 2 3 26 26 H 1.08998 * 109.46887 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47240 * 240.00514 * 2 1 3 28 28 H 1.09006 * 109.47335 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47256 * 300.00001 * 3 2 1 30 30 H 1.09003 * 109.47189 * 60.00435 * 3 2 1 31 31 H 1.08997 * 109.46736 * 55.00365 * 4 2 1 32 32 H 1.08995 * 109.47302 * 295.00140 * 4 2 1 33 33 H 1.09002 * 109.68231 * 103.32932 * 11 8 7 34 34 H 1.08999 * 109.68240 * 223.84597 * 11 8 7 35 35 H 1.08998 * 109.47659 * 169.65162 * 12 11 8 36 36 H 1.09004 * 109.47769 * 289.66665 * 12 11 8 37 37 H 0.96998 * 119.99997 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.67088 * 282.96298 * 23 7 6 39 39 H 1.08999 * 109.67500 * 43.45974 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5420 -0.8293 1.1888 6 7 4.2285 -1.3584 0.2099 7 6 5.5310 -1.2806 0.4962 8 6 5.6582 -0.6814 1.6994 9 7 4.4022 -0.3949 2.1388 10 1 4.1680 0.0387 2.9742 11 6 6.9739 -0.4065 2.3799 12 6 8.0553 -1.2616 1.7072 13 6 7.9715 -1.0855 0.1878 14 1 7.9494 -0.0228 -0.0538 15 6 9.1751 -1.7223 -0.4580 16 1 9.9236 -2.2051 0.1528 17 6 9.3201 -1.6895 -1.8288 18 7 8.4083 -1.1020 -2.5726 19 14 10.8114 -2.4794 -2.6295 20 1 11.6818 -3.0696 -1.5809 21 1 10.3661 -3.5468 -3.5609 22 1 11.5719 -1.4504 -3.3831 23 6 6.6957 -1.7564 -0.3364 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6055 -1.7198 1.2951 32 1 1.7517 -0.1584 2.1370 33 1 7.2256 0.6493 2.2795 34 1 6.9030 -0.6681 3.4356 35 1 9.0382 -0.9457 2.0569 36 1 7.8992 -2.3103 1.9604 37 1 8.5105 -1.0786 -3.5369 38 1 6.7880 -2.8393 -0.2533 39 1 6.5385 -1.4804 -1.3791 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259672241.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:58 Heat of formation + Delta-G solvation = -0.945338 kcal Electronic energy + Delta-G solvation = -18243.684103 eV Core-core repulsion = 15570.651763 eV Total energy + Delta-G solvation = -2673.032340 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.13464 -38.08710 -36.92945 -34.43057 -33.83315 -30.92752 -30.34395 -28.19701 -27.96966 -26.19852 -23.64102 -22.42701 -22.06458 -20.70049 -19.53479 -18.50372 -18.05327 -16.57408 -16.36938 -16.09715 -15.24715 -15.04513 -14.72370 -14.56557 -14.43456 -13.92814 -13.75238 -13.20493 -13.12340 -13.02529 -12.87804 -12.73140 -12.55126 -12.31568 -12.26259 -11.89118 -11.77951 -11.61326 -11.46645 -11.18314 -10.86293 -10.66402 -10.53055 -10.39009 -8.81308 -8.05594 -6.20966 1.18190 1.42260 1.43856 1.55675 2.23790 2.26689 2.45879 3.20440 3.54434 3.93427 4.03155 4.07882 4.21744 4.27865 4.34895 4.49350 4.63364 4.71544 4.78537 4.80035 4.88407 4.92120 4.98139 5.00445 5.04116 5.10380 5.15656 5.27841 5.31350 5.41024 5.47586 5.53045 5.59344 5.69063 5.86075 6.00491 6.15632 6.38922 6.74083 6.92525 7.35204 7.48204 8.99552 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.030910 B = 0.005437 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.652680 B = 5148.227652 C = 5747.277712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 C -0.141 4.141 4 C -0.019 4.019 5 C 0.201 3.799 6 N -0.528 5.528 7 C -0.020 4.020 8 C -0.031 4.031 9 N -0.547 5.547 10 H 0.432 0.568 11 C -0.030 4.030 12 C -0.098 4.098 13 C 0.051 3.949 14 H -0.006 1.006 15 C -0.533 4.533 16 H 0.061 0.939 17 C 0.009 3.991 18 N -0.921 5.921 19 Si 0.956 3.044 20 H -0.261 1.261 21 H -0.284 1.284 22 H -0.280 1.280 23 C -0.012 4.012 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.019 0.981 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.259 0.741 38 H 0.028 0.972 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.574 3.999 12.020 18.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 C -0.198 4.198 4 C -0.058 4.058 5 C -0.063 4.063 6 N -0.249 5.249 7 C -0.148 4.148 8 C -0.147 4.147 9 N -0.153 5.153 10 H 0.273 0.727 11 C -0.068 4.068 12 C -0.136 4.136 13 C 0.032 3.968 14 H 0.012 0.988 15 C -0.571 4.571 16 H 0.079 0.921 17 C -0.189 4.189 18 N -0.560 5.560 19 Si 0.782 3.218 20 H -0.185 1.185 21 H -0.210 1.210 22 H -0.206 1.206 23 C -0.051 4.051 24 H 0.092 0.908 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.128 0.872 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.920 3.678 11.113 18.188 hybrid contribution 1.217 0.056 -0.193 1.234 sum -12.703 3.735 10.919 17.162 Atomic orbital electron populations 1.21769 0.92395 1.02524 1.02790 1.21014 0.97108 0.95688 0.97064 1.21789 0.99152 0.96312 1.02548 1.20231 0.82220 1.03020 1.00344 1.23887 0.95652 1.00414 0.86312 1.69824 1.04353 1.22842 1.27863 1.21145 0.92281 1.05309 0.96051 1.21153 0.87836 1.07713 0.98003 1.42617 1.05035 1.47746 1.19868 0.72681 1.20126 0.87259 1.00565 0.98846 1.21544 0.97568 0.98727 0.95736 1.18664 0.92018 0.94193 0.91951 0.98804 1.21635 1.06951 1.36305 0.92232 0.92084 1.25845 0.99005 0.95817 0.98251 1.70109 1.35778 1.44916 1.05208 0.85530 0.79645 0.78133 0.78500 1.18525 1.21043 1.20620 1.19825 0.90517 0.96779 0.98007 0.90758 0.92376 0.91987 0.93277 0.96173 0.92536 0.90614 0.88749 0.87168 0.90474 0.88368 0.91100 0.93189 0.93233 0.95331 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.19 71.98 0.66 -1.48 16 2 C -0.09 -2.03 2.89 -10.79 -0.03 -2.07 16 3 C -0.14 -3.28 9.01 71.98 0.65 -2.63 16 4 C -0.02 -0.42 5.32 29.85 0.16 -0.26 16 5 C 0.20 6.52 6.42 137.97 0.89 7.41 16 6 N -0.53 -23.39 11.15 -175.88 -1.96 -25.35 16 7 C -0.02 -0.92 6.98 41.61 0.29 -0.63 16 8 C -0.03 -1.18 7.08 41.14 0.29 -0.88 16 9 N -0.55 -15.85 6.15 -174.58 -1.07 -16.92 16 10 H 0.43 8.16 8.96 -92.71 -0.83 7.33 16 11 C -0.03 -0.98 6.30 29.97 0.19 -0.79 16 12 C -0.10 -4.00 5.16 30.79 0.16 -3.84 16 13 C 0.05 2.67 2.07 -11.35 -0.02 2.65 16 14 H -0.01 -0.36 8.12 -2.38 -0.02 -0.38 16 15 C -0.53 -30.24 8.53 25.60 0.22 -30.03 16 16 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 17 C 0.01 0.53 5.30 84.65 0.45 0.98 16 18 N -0.92 -56.56 11.46 21.45 0.25 -56.32 16 19 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 20 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 23 C -0.01 -0.67 5.19 30.03 0.16 -0.51 16 24 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 1.48 8.07 -2.39 -0.02 1.47 16 28 H 0.02 0.60 7.38 -2.38 -0.02 0.58 16 29 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 31 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 2.41 8.14 -2.39 -0.02 2.40 16 34 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.07 2.69 8.11 -2.39 -0.02 2.67 16 36 H 0.05 2.04 8.12 -2.38 -0.02 2.02 16 37 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 38 H 0.03 1.60 8.12 -2.39 -0.02 1.58 16 39 H 0.05 3.33 6.44 -2.39 -0.02 3.31 16 Total: -1.00 -73.28 311.69 3.48 -69.80 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.19 Total: 13.84 kcal Atomic # 6 Polarization: -36.13 SS G_CDS: 4.05 Total: -32.08 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -2.79 Total: -98.59 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -73.28 3.48 -69.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259672241.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.853 kcal (2) G-P(sol) polarization free energy of solvation -73.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds