Wall clock time and date at job start Mon Mar 30 2020 06:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 5 5 C 1.50698 * 109.46933 * 294.99806 * 4 2 1 6 6 N 1.30749 * 125.61892 * 305.02244 * 5 4 2 7 7 C 1.33577 * 109.15174 * 179.97438 * 6 5 4 8 8 C 1.35029 * 107.97584 * 359.95669 * 7 6 5 9 9 N 1.35314 * 125.61570 * 124.72098 * 5 4 2 10 10 H 0.97003 * 126.49957 * 0.02742 * 9 5 4 11 11 C 1.50652 * 124.45448 * 180.16725 * 8 7 6 12 12 C 1.53407 * 108.37885 * 16.37862 * 11 8 7 13 13 C 1.53114 * 109.43783 * 310.34910 * 12 11 8 14 14 H 1.09004 * 109.46708 * 310.00374 * 13 12 11 15 15 C 1.50701 * 109.46009 * 190.03021 * 13 12 11 16 16 H 1.08006 * 119.99895 * 0.02562 * 15 13 12 17 17 C 1.37879 * 120.00329 * 179.97438 * 15 13 12 18 18 N 1.31518 * 120.00190 * 179.97438 * 17 15 13 19 19 Si 1.86800 * 119.99795 * 0.02562 * 17 15 13 20 20 H 1.48502 * 109.47215 * 89.99576 * 19 17 15 21 21 H 1.48496 * 109.47026 * 209.99369 * 19 17 15 22 22 H 1.48498 * 109.47255 * 329.99725 * 19 17 15 23 23 C 1.50865 * 128.03581 * 179.87536 * 7 6 5 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 28 28 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 29 29 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 31 31 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 32 32 H 1.09000 * 109.47325 * 174.99723 * 4 2 1 33 33 H 1.08996 * 109.67976 * 136.09819 * 11 8 7 34 34 H 1.08992 * 109.68294 * 256.61758 * 11 8 7 35 35 H 1.08996 * 109.47678 * 70.33959 * 12 11 8 36 36 H 1.08998 * 109.47351 * 190.35710 * 12 11 8 37 37 H 0.96994 * 120.00219 * 180.02562 * 18 17 15 38 38 H 1.09004 * 109.67262 * 316.41863 * 23 7 6 39 39 H 1.08995 * 109.67592 * 76.95081 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.6414 -2.1732 -1.1890 6 7 1.9110 -2.9968 -0.2100 7 6 1.4039 -4.1989 -0.4964 8 6 0.7951 -4.1186 -1.6990 9 7 0.9405 -2.8379 -2.1365 10 1 0.6063 -2.4716 -2.9702 11 6 0.0936 -5.2663 -2.3775 12 6 -0.1653 -6.3602 -1.3335 13 6 1.1285 -6.6501 -0.5677 14 1 1.9408 -6.8140 -1.2758 15 6 0.9448 -7.8827 0.2796 16 1 0.0007 -8.4071 0.2726 17 6 1.9825 -8.3417 1.0631 18 7 1.8220 -9.4171 1.8029 19 14 3.6157 -7.4351 1.0747 20 1 3.5993 -6.3993 2.1386 21 1 4.7146 -8.3984 1.3386 22 1 3.8315 -6.7870 -0.2438 23 6 1.4692 -5.4571 0.3335 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6054 -0.2616 -2.1370 32 1 3.1264 -0.6442 -1.2952 33 1 -0.8541 -4.9234 -2.7927 34 1 0.7225 -5.6609 -3.1753 35 1 -0.9325 -6.0231 -0.6365 36 1 -0.5025 -7.2677 -1.8342 37 1 2.5518 -9.7398 2.3543 38 1 2.4741 -5.5780 0.7382 39 1 0.7493 -5.3963 1.1496 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259672247.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:00 Heat of formation + Delta-G solvation = 25.046641 kcal Electronic energy + Delta-G solvation = -18339.859375 eV Core-core repulsion = 15667.954132 eV Total energy + Delta-G solvation = -2671.905243 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.91478 -36.88562 -35.82446 -32.76723 -32.26040 -29.82760 -29.27179 -27.25284 -26.81294 -24.29649 -22.41955 -21.09998 -20.62362 -19.59004 -18.16215 -17.10961 -16.64335 -15.49683 -14.88962 -14.45087 -14.29326 -14.07749 -13.38000 -13.15114 -12.91783 -12.79287 -12.46840 -12.35973 -12.12146 -12.06357 -11.66191 -11.30878 -11.04810 -10.95882 -10.84998 -10.74327 -10.25031 -10.13576 -9.73264 -9.65922 -9.32070 -9.01898 -8.94669 -8.47119 -7.51607 -6.01960 -4.01457 2.38922 3.33836 3.39633 3.46712 3.51688 3.57941 4.49129 4.54188 4.74397 4.85534 5.04294 5.22950 5.31835 5.34462 5.47420 5.53118 5.55835 5.64035 5.69221 5.75663 5.81288 5.86536 6.01954 6.04566 6.12040 6.22398 6.32619 6.39599 6.45290 6.63246 6.73985 6.80935 7.03554 7.17678 7.36609 7.59375 7.75644 7.82943 8.55947 8.58777 9.01873 9.61359 11.11074 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.029382 B = 0.006106 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.740102 B = 4584.482429 C = 5112.213881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.146 4.146 4 C -0.022 4.022 5 C 0.188 3.812 6 N -0.481 5.481 7 C 0.022 3.978 8 C -0.030 4.030 9 N -0.564 5.564 10 H 0.410 0.590 11 C -0.041 4.041 12 C -0.093 4.093 13 C 0.017 3.983 14 H 0.029 0.971 15 C -0.513 4.513 16 H 0.076 0.924 17 C 0.073 3.927 18 N -0.901 5.901 19 Si 0.881 3.119 20 H -0.275 1.275 21 H -0.298 1.298 22 H -0.265 1.265 23 C -0.040 4.040 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.263 0.737 38 H 0.057 0.943 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.975 18.806 -8.734 20.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 C -0.203 4.203 4 C -0.061 4.061 5 C -0.074 4.074 6 N -0.201 5.201 7 C -0.108 4.108 8 C -0.145 4.145 9 N -0.167 5.167 10 H 0.247 0.753 11 C -0.080 4.080 12 C -0.131 4.131 13 C -0.003 4.003 14 H 0.047 0.953 15 C -0.551 4.551 16 H 0.094 0.906 17 C -0.129 4.129 18 N -0.539 5.539 19 Si 0.711 3.289 20 H -0.202 1.202 21 H -0.225 1.225 22 H -0.190 1.190 23 C -0.078 4.078 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.444 18.850 -7.847 20.469 hybrid contribution 0.372 0.470 -1.031 1.192 sum -1.072 19.320 -8.878 21.289 Atomic orbital electron populations 1.21818 0.95273 1.01929 1.01142 1.21061 0.95926 0.95478 0.98456 1.21838 1.01056 0.95780 1.01656 1.19985 1.01539 0.85699 0.98849 1.23093 1.00463 0.96308 0.87561 1.69910 1.23199 1.01395 1.25624 1.21088 1.00531 0.94245 0.94904 1.21098 1.08596 0.85965 0.98828 1.42777 1.44665 1.09865 1.19403 0.75294 1.20213 0.97621 0.91834 0.98333 1.21486 0.99686 0.95744 0.96230 1.19217 0.93668 0.92961 0.94418 0.95307 1.21029 1.00729 1.08560 1.24761 0.90627 1.24992 0.98437 0.94637 0.94840 1.69897 1.32771 1.23291 1.27987 0.86940 0.83733 0.78798 0.79396 1.20200 1.22535 1.19042 1.20641 1.01075 0.88544 0.97557 0.93279 0.92571 0.92734 0.89602 0.92501 0.92551 0.92923 0.91054 0.89744 0.92129 0.91185 0.92383 0.91455 0.92682 0.92445 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.01 37.16 0.33 -1.22 16 2 C -0.09 -0.98 2.90 -90.62 -0.26 -1.24 16 3 C -0.15 -1.21 9.19 37.16 0.34 -0.87 16 4 C -0.02 -0.24 5.32 -27.89 -0.15 -0.39 16 5 C 0.19 2.92 6.42 -154.96 -0.99 1.93 16 6 N -0.48 -9.67 11.14 -6.95 -0.08 -9.75 16 7 C 0.02 0.46 6.98 -82.89 -0.58 -0.12 16 8 C -0.03 -0.54 7.08 -81.85 -0.58 -1.12 16 9 N -0.56 -8.08 6.15 -6.53 -0.04 -8.12 16 10 H 0.41 4.19 8.96 -40.82 -0.37 3.83 16 11 C -0.04 -0.67 6.30 -27.70 -0.17 -0.84 16 12 C -0.09 -1.82 5.16 -26.46 -0.14 -1.96 16 13 C 0.02 0.40 1.66 -91.53 -0.15 0.25 16 14 H 0.03 0.71 7.17 -51.93 -0.37 0.34 16 15 C -0.51 -14.40 9.11 -34.44 -0.31 -14.72 16 16 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 17 C 0.07 2.12 5.45 -17.82 -0.10 2.03 16 18 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 19 Si 0.88 22.89 24.28 -169.99 -4.13 18.76 16 20 H -0.28 -7.12 6.96 56.52 0.39 -6.73 16 21 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 22 H -0.27 -6.77 6.51 56.52 0.37 -6.40 16 23 C -0.04 -0.95 4.88 -27.62 -0.13 -1.08 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.75 7.38 -51.93 -0.38 0.36 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.09 1.14 8.07 -51.93 -0.42 0.72 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.06 1.13 8.12 -51.93 -0.42 0.71 16 36 H 0.07 1.26 8.11 -51.93 -0.42 0.84 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 38 H 0.06 1.46 3.66 -51.93 -0.19 1.27 16 39 H 0.07 1.80 8.12 -51.93 -0.42 1.37 16 LS Contribution 304.69 15.07 4.59 4.59 Total: -1.00 -32.70 304.69 -8.17 -40.87 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -6.40 Total: 0.06 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -2.89 Total: -19.36 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.66 Total: -44.93 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.13 Total: 18.76 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.70 -8.17 -40.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259672247.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.921 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds