Wall clock time and date at job start Mon Mar 30 2020 06:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 5 5 C 1.50698 * 109.46933 * 294.99806 * 4 2 1 6 6 N 1.30749 * 125.61892 * 305.02244 * 5 4 2 7 7 C 1.33577 * 109.15174 * 179.97438 * 6 5 4 8 8 C 1.35029 * 107.97584 * 359.95669 * 7 6 5 9 9 N 1.35314 * 125.61570 * 124.72098 * 5 4 2 10 10 H 0.97003 * 126.49957 * 0.02742 * 9 5 4 11 11 C 1.50652 * 124.45448 * 180.16725 * 8 7 6 12 12 C 1.53407 * 108.37885 * 16.37862 * 11 8 7 13 13 C 1.53114 * 109.43783 * 310.34910 * 12 11 8 14 14 H 1.09004 * 109.46708 * 310.00374 * 13 12 11 15 15 C 1.50701 * 109.46009 * 190.03021 * 13 12 11 16 16 H 1.08006 * 119.99895 * 0.02562 * 15 13 12 17 17 C 1.37879 * 120.00329 * 179.97438 * 15 13 12 18 18 N 1.31518 * 120.00190 * 179.97438 * 17 15 13 19 19 Si 1.86800 * 119.99795 * 0.02562 * 17 15 13 20 20 H 1.48502 * 109.47215 * 89.99576 * 19 17 15 21 21 H 1.48496 * 109.47026 * 209.99369 * 19 17 15 22 22 H 1.48498 * 109.47255 * 329.99725 * 19 17 15 23 23 C 1.50865 * 128.03581 * 179.87536 * 7 6 5 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 28 28 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 29 29 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 31 31 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 32 32 H 1.09000 * 109.47325 * 174.99723 * 4 2 1 33 33 H 1.08996 * 109.67976 * 136.09819 * 11 8 7 34 34 H 1.08992 * 109.68294 * 256.61758 * 11 8 7 35 35 H 1.08996 * 109.47678 * 70.33959 * 12 11 8 36 36 H 1.08998 * 109.47351 * 190.35710 * 12 11 8 37 37 H 0.96994 * 120.00219 * 180.02562 * 18 17 15 38 38 H 1.09004 * 109.67262 * 316.41863 * 23 7 6 39 39 H 1.08995 * 109.67592 * 76.95081 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.6414 -2.1732 -1.1890 6 7 1.9110 -2.9968 -0.2100 7 6 1.4039 -4.1989 -0.4964 8 6 0.7951 -4.1186 -1.6990 9 7 0.9405 -2.8379 -2.1365 10 1 0.6063 -2.4716 -2.9702 11 6 0.0936 -5.2663 -2.3775 12 6 -0.1653 -6.3602 -1.3335 13 6 1.1285 -6.6501 -0.5677 14 1 1.9408 -6.8140 -1.2758 15 6 0.9448 -7.8827 0.2796 16 1 0.0007 -8.4071 0.2726 17 6 1.9825 -8.3417 1.0631 18 7 1.8220 -9.4171 1.8029 19 14 3.6157 -7.4351 1.0747 20 1 3.5993 -6.3993 2.1386 21 1 4.7146 -8.3984 1.3386 22 1 3.8315 -6.7870 -0.2438 23 6 1.4692 -5.4571 0.3335 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6054 -0.2616 -2.1370 32 1 3.1264 -0.6442 -1.2952 33 1 -0.8541 -4.9234 -2.7927 34 1 0.7225 -5.6609 -3.1753 35 1 -0.9325 -6.0231 -0.6365 36 1 -0.5025 -7.2677 -1.8342 37 1 2.5518 -9.7398 2.3543 38 1 2.4741 -5.5780 0.7382 39 1 0.7493 -5.3963 1.1496 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259672247.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:00 Heat of formation + Delta-G solvation = 3.742534 kcal Electronic energy + Delta-G solvation = -18340.783191 eV Core-core repulsion = 15667.954132 eV Total energy + Delta-G solvation = -2672.829059 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.24744 -38.28658 -36.99073 -34.50387 -34.01294 -31.35494 -30.65061 -28.26333 -27.97922 -26.11849 -23.91632 -22.40323 -22.04000 -20.75965 -19.65427 -18.81835 -18.42157 -16.67898 -16.53124 -15.84292 -15.59712 -15.15337 -14.93890 -14.72934 -14.52132 -14.16082 -14.03670 -13.62867 -13.19634 -13.07442 -13.03409 -12.77920 -12.58527 -12.27149 -11.97607 -11.89942 -11.79208 -11.59845 -11.50698 -11.33919 -11.11592 -10.80777 -10.69300 -10.54277 -8.91102 -8.31875 -6.33464 1.09908 1.29058 1.32167 1.42248 2.12547 2.18499 2.29682 3.03077 3.44358 3.89230 3.96096 4.05902 4.08322 4.19662 4.21801 4.45159 4.47221 4.58936 4.70973 4.72585 4.79299 4.81737 4.84683 4.90773 4.91619 5.03305 5.08431 5.14586 5.20424 5.29819 5.39181 5.43580 5.50693 5.53355 5.64789 5.72138 5.88107 6.32335 6.65853 6.74447 7.23832 7.32464 8.84889 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.029382 B = 0.006106 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.740102 B = 4584.482429 C = 5112.213881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.139 4.139 4 C -0.021 4.021 5 C 0.205 3.795 6 N -0.527 5.527 7 C -0.027 4.027 8 C -0.018 4.018 9 N -0.544 5.544 10 H 0.435 0.565 11 C -0.032 4.032 12 C -0.091 4.091 13 C 0.018 3.982 14 H 0.023 0.977 15 C -0.513 4.513 16 H 0.046 0.954 17 C 0.023 3.977 18 N -0.945 5.945 19 Si 0.939 3.061 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.258 1.258 23 C -0.033 4.033 24 H 0.073 0.927 25 H 0.025 0.975 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.266 0.734 38 H 0.034 0.966 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.042 22.005 -11.604 24.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 C -0.197 4.197 4 C -0.060 4.060 5 C -0.058 4.058 6 N -0.247 5.247 7 C -0.155 4.155 8 C -0.135 4.135 9 N -0.150 5.150 10 H 0.276 0.724 11 C -0.070 4.070 12 C -0.129 4.129 13 C -0.002 4.002 14 H 0.041 0.959 15 C -0.551 4.551 16 H 0.065 0.935 17 C -0.175 4.175 18 N -0.585 5.585 19 Si 0.768 3.232 20 H -0.207 1.207 21 H -0.220 1.220 22 H -0.183 1.183 23 C -0.072 4.072 24 H 0.092 0.908 25 H 0.044 0.956 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.129 0.871 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.526 22.065 -10.755 24.594 hybrid contribution 0.312 -0.478 -0.121 0.583 sum -1.214 21.588 -10.876 24.203 Atomic orbital electron populations 1.21788 0.95156 1.00267 1.02554 1.21017 0.95977 0.96866 0.96995 1.21779 1.01274 0.93811 1.02788 1.20253 1.02354 0.82886 1.00538 1.23846 0.98364 0.97403 0.86213 1.69804 1.25072 1.01748 1.28124 1.20736 1.04144 0.94046 0.96613 1.21153 1.07145 0.87542 0.97637 1.42650 1.43824 1.08386 1.20093 0.72381 1.20188 0.99851 0.89876 0.97123 1.21387 0.96980 0.97658 0.96839 1.19153 0.95898 0.91129 0.93981 0.95872 1.21394 0.99266 1.09724 1.24680 0.93546 1.25682 1.01653 0.95314 0.94852 1.70011 1.33976 1.25063 1.29486 0.85995 0.80249 0.77490 0.79482 1.20671 1.21957 1.18274 1.20297 0.98955 0.90571 0.97359 0.90787 0.95622 0.92490 0.93027 0.92326 0.92202 0.90855 0.87094 0.88946 0.88031 0.89456 0.93016 0.90851 0.92514 0.94746 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.01 71.98 0.65 -2.04 16 2 C -0.09 -1.73 2.90 -10.79 -0.03 -1.76 16 3 C -0.14 -1.85 9.19 71.98 0.66 -1.19 16 4 C -0.02 -0.40 5.32 29.85 0.16 -0.24 16 5 C 0.21 5.88 6.42 137.97 0.89 6.76 16 6 N -0.53 -20.94 11.14 -175.89 -1.96 -22.90 16 7 C -0.03 -1.15 6.98 41.61 0.29 -0.85 16 8 C -0.02 -0.60 7.08 41.14 0.29 -0.31 16 9 N -0.54 -13.56 6.15 -174.58 -1.07 -14.63 16 10 H 0.43 6.58 8.96 -92.71 -0.83 5.75 16 11 C -0.03 -0.93 6.30 29.97 0.19 -0.74 16 12 C -0.09 -3.45 5.16 30.77 0.16 -3.29 16 13 C 0.02 0.85 1.66 -11.39 -0.02 0.83 16 14 H 0.02 1.14 7.17 -2.38 -0.02 1.13 16 15 C -0.51 -29.80 9.11 25.60 0.23 -29.57 16 16 H 0.05 2.90 7.99 -2.91 -0.02 2.88 16 17 C 0.02 1.36 5.45 84.65 0.46 1.82 16 18 N -0.94 -60.41 13.96 21.45 0.30 -60.11 16 19 Si 0.94 48.94 24.28 68.60 1.67 50.61 16 20 H -0.28 -14.63 6.96 99.48 0.69 -13.94 16 21 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 22 H -0.26 -12.99 6.51 99.48 0.65 -12.35 16 23 C -0.03 -1.63 4.88 30.02 0.15 -1.48 16 24 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.02 0.63 7.38 -2.39 -0.02 0.62 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.05 1.36 8.07 -2.39 -0.02 1.34 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.05 2.01 8.12 -2.39 -0.02 1.99 16 36 H 0.07 2.68 8.11 -2.39 -0.02 2.66 16 37 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 38 H 0.03 1.79 3.66 -2.38 -0.01 1.78 16 39 H 0.05 2.67 8.12 -2.39 -0.02 2.65 16 Total: -1.00 -75.09 304.69 3.13 -71.96 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 0.13 Total: 7.12 kcal Atomic # 6 Polarization: -36.12 SS G_CDS: 4.07 Total: -32.05 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -2.73 Total: -97.64 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 1.67 Total: 50.61 kcal Total: -75.09 3.13 -71.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259672247.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.700 kcal (2) G-P(sol) polarization free energy of solvation -75.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds