Wall clock time and date at job start Mon Mar 30 2020 05:51:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 N 1.30787 * 125.72467 * 2 1
4 4 C 1.34424 * 109.32763 * 180.23999 * 3 2 1
5 5 C 1.50694 * 126.10552 * 179.87732 * 4 3 2
6 6 C 1.53004 * 109.47175 * 269.68993 * 5 4 3
7 7 C 1.50699 * 109.46843 * 180.02562 * 6 5 4
8 8 H 1.08002 * 120.00516 * 359.97438 * 7 6 5
9 9 C 1.37884 * 119.99783 * 180.02562 * 7 6 5
10 10 N 1.31514 * 119.99707 * 0.02562 * 9 7 6
11 11 Si 1.86796 * 119.99956 * 180.27458 * 9 7 6
12 12 H 1.48503 * 109.47407 * 269.72718 * 11 9 7
13 13 H 1.48505 * 109.47281 * 29.72474 * 11 9 7
14 14 H 1.48501 * 109.47274 * 149.72572 * 11 9 7
15 15 C 1.33869 * 107.79254 * 359.61946 * 4 3 2
16 16 N 1.34407 * 125.72728 * 179.76803 * 2 1 3
17 17 C 1.46471 * 128.44383 * 359.75946 * 16 2 1
18 18 C 1.53289 * 108.69623 * 197.38474 * 17 16 2
19 19 C 1.53115 * 109.70830 * 309.23604 * 18 17 16
20 20 H 1.08999 * 109.49611 * 309.95604 * 19 18 17
21 21 C 1.52996 * 109.49637 * 189.85356 * 19 18 17
22 22 C 1.50708 * 128.67919 * 180.17780 * 15 4 3
23 23 H 1.09002 * 109.47248 * 270.22913 * 1 2 3
24 24 H 1.08994 * 109.47320 * 30.23719 * 1 2 3
25 25 H 1.09005 * 109.46564 * 150.23335 * 1 2 3
26 26 H 1.09006 * 109.46887 * 149.69190 * 5 4 3
27 27 H 1.08997 * 109.46876 * 29.69239 * 5 4 3
28 28 H 1.09001 * 109.46361 * 60.00344 * 6 5 4
29 29 H 1.08997 * 109.46991 * 300.00234 * 6 5 4
30 30 H 0.97005 * 119.99656 * 179.97438 * 10 9 7
31 31 H 1.09005 * 109.60044 * 77.62859 * 17 16 2
32 32 H 1.08998 * 109.60397 * 317.15365 * 17 16 2
33 33 H 1.09001 * 109.42883 * 189.15978 * 18 17 16
34 34 H 1.09001 * 109.38855 * 69.28459 * 18 17 16
35 35 H 1.08998 * 109.47387 * 300.16511 * 21 19 18
36 36 H 1.08999 * 109.47370 * 60.16874 * 21 19 18
37 37 H 1.09002 * 109.46969 * 180.16514 * 21 19 18
38 38 H 1.08997 * 109.74600 * 315.36197 * 22 15 4
39 39 H 1.08998 * 109.74926 * 76.08486 * 22 15 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2706 1.0618 0.0000
4 6 3.5602 0.6823 -0.0053
5 6 4.7557 1.5996 -0.0097
6 6 5.1594 1.9045 -1.4538
7 6 6.3553 2.8213 -1.4581
8 1 6.7844 3.1537 -0.5244
9 6 6.9012 3.2367 -2.6542
10 7 6.3778 2.8331 -3.7912
11 14 8.3884 4.3670 -2.6596
12 1 7.9354 5.7812 -2.6673
13 1 9.2057 4.1157 -1.4454
14 1 9.2066 4.1027 -3.8704
15 6 3.5928 -0.6560 -0.0002
16 7 2.2918 -1.0911 0.0044
17 6 1.8923 -2.5002 0.0149
18 6 3.0929 -3.3481 0.4502
19 6 4.3188 -2.9763 -0.3884
20 1 4.0546 -2.9920 -1.4458
21 6 5.4409 -3.9829 -0.1267
22 6 4.7919 -1.5689 0.0007
23 1 -0.3634 0.0041 1.0277
24 1 -0.3634 0.8878 -0.5175
25 1 -0.3633 -0.8921 -0.5102
26 1 5.5862 1.1166 0.5054
27 1 4.5026 2.5288 0.5007
28 1 4.3289 2.3874 -1.9688
29 1 5.4124 0.9752 -1.9641
30 1 6.7616 3.1256 -4.6327
31 1 1.5775 -2.7985 -0.9851
32 1 1.0706 -2.6422 0.7169
33 1 2.8621 -4.4038 0.3071
34 1 3.3041 -3.1626 1.5033
35 1 5.7034 -3.9675 0.9311
36 1 5.1045 -4.9821 -0.4031
37 1 6.3144 -3.7161 -0.7217
38 1 5.5255 -1.2139 -0.7231
39 1 5.2366 -1.5919 0.9956
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259716240.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:51:35
Heat of formation + Delta-G solvation = 24.825529 kcal
Electronic energy + Delta-G solvation = -18242.827668 eV
Core-core repulsion = 15570.912837 eV
Total energy + Delta-G solvation = -2671.914831 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 248.158 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-41.97159 -37.18201 -34.50548 -32.93473 -31.70245 -30.51718 -29.47817 -27.90060
-25.85332 -23.91202 -23.38454 -21.14712 -20.65224 -19.35632 -18.59329 -16.34900
-15.93334 -15.67370 -14.74079 -14.41282 -14.29107 -14.06485 -13.66669 -13.20287
-12.92269 -12.68065 -12.45840 -12.30613 -12.22947 -12.07283 -11.87206 -11.61490
-10.95834 -10.90469 -10.84090 -10.75556 -10.68283 -10.51812 -9.76016 -9.60265
-9.23722 -8.95086 -8.83118 -8.22626 -7.45333 -5.88191 -3.90171 2.46720
3.07991 3.39500 3.45031 3.48473 3.68468 4.43099 4.52180 4.55557
4.63029 4.79348 4.97515 5.09557 5.12225 5.27183 5.47139 5.48809
5.50382 5.58366 5.61237 5.66134 5.72851 5.83282 5.86036 5.94280
6.08365 6.19091 6.26147 6.31350 6.76262 6.87621 6.89747 7.14056
7.46669 7.68260 7.83956 8.01735 8.15595 8.55243 8.69812 9.17532
9.72726 11.23090
Molecular weight = 248.16amu
Principal moments of inertia in cm(-1)
A = 0.023049 B = 0.005840 C = 0.004962
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1214.517839 B = 4793.575209 C = 5641.039948
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 C 0.191 3.809
3 N -0.486 5.486
4 C 0.038 3.962
5 C -0.032 4.032
6 C 0.034 3.966
7 C -0.517 4.517
8 H 0.056 0.944
9 C 0.056 3.944
10 N -0.896 5.896
11 Si 0.891 3.109
12 H -0.281 1.281
13 H -0.274 1.274
14 H -0.288 1.288
15 C -0.036 4.036
16 N -0.459 5.459
17 C 0.107 3.893
18 C -0.126 4.126
19 C -0.097 4.097
20 H 0.074 0.926
21 C -0.144 4.144
22 C -0.036 4.036
23 H 0.073 0.927
24 H 0.087 0.913
25 H 0.066 0.934
26 H 0.058 0.942
27 H 0.060 0.940
28 H 0.017 0.983
29 H 0.013 0.987
30 H 0.259 0.741
31 H 0.078 0.922
32 H 0.084 0.916
33 H 0.081 0.919
34 H 0.072 0.928
35 H 0.055 0.945
36 H 0.053 0.947
37 H 0.062 0.938
38 H 0.092 0.908
39 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.847 -15.623 8.465 19.849
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C -0.070 4.070
3 N -0.206 5.206
4 C -0.090 4.090
5 C -0.071 4.071
6 C -0.004 4.004
7 C -0.555 4.555
8 H 0.074 0.926
9 C -0.145 4.145
10 N -0.536 5.536
11 Si 0.719 3.281
12 H -0.207 1.207
13 H -0.199 1.199
14 H -0.214 1.214
15 C -0.148 4.148
16 N -0.145 5.145
17 C -0.016 4.016
18 C -0.164 4.164
19 C -0.115 4.115
20 H 0.093 0.907
21 C -0.202 4.202
22 C -0.074 4.074
23 H 0.091 0.909
24 H 0.106 0.894
25 H 0.084 0.916
26 H 0.077 0.923
27 H 0.079 0.921
28 H 0.036 0.964
29 H 0.031 0.969
30 H 0.068 0.932
31 H 0.096 0.904
32 H 0.102 0.898
33 H 0.100 0.900
34 H 0.090 0.910
35 H 0.075 0.925
36 H 0.072 0.928
37 H 0.081 0.919
38 H 0.111 0.889
39 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -9.167 -14.950 8.285 19.395
hybrid contribution 0.943 -0.223 -0.225 0.995
sum -8.224 -15.172 8.060 19.047
Atomic orbital electron populations
1.20058 0.85634 1.03461 1.02718 1.22984 0.95252 0.81506 1.07307
1.70370 1.02082 1.27770 1.20364 1.20780 0.93080 0.91242 1.03895
1.20102 0.89887 0.95609 1.01473 1.18999 0.95922 0.96340 0.89130
1.21290 1.13357 1.28613 0.92245 0.92621 1.25018 0.97264 0.96488
0.95695 1.69992 1.41198 1.45194 0.97187 0.86619 0.82942 0.81200
0.77373 1.20713 1.19872 1.21358 1.20744 0.84944 0.94980 1.14132
1.45082 1.06472 1.06393 1.56571 1.21834 0.98391 0.78978 1.02379
1.21920 0.94156 0.99336 1.00947 1.21250 0.94915 0.95302 1.00065
0.90745 1.21799 0.98342 0.98103 1.01921 1.20223 0.93500 0.91050
1.02647 0.90859 0.89409 0.91554 0.92336 0.92102 0.96415 0.96871
0.93173 0.90391 0.89795 0.90013 0.90967 0.92542 0.92761 0.91923
0.88922 0.90644
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.71 10.24 36.00 0.37 -0.34 16
2 C 0.19 3.28 7.94 -155.75 -1.24 2.05 16
3 N -0.49 -10.51 11.27 -7.27 -0.08 -10.59 16
4 C 0.04 0.84 6.34 -82.99 -0.53 0.31 16
5 C -0.03 -0.75 5.54 -27.88 -0.15 -0.91 16
6 C 0.03 0.94 4.96 -27.88 -0.14 0.80 16
7 C -0.52 -15.27 9.11 -34.44 -0.31 -15.58 16
8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16
9 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16
10 N -0.90 -28.02 13.29 55.43 0.74 -27.28 16
11 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16
12 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16
13 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16
14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
15 C -0.04 -0.67 6.56 -81.73 -0.54 -1.20 16
16 N -0.46 -7.23 3.13 -109.43 -0.34 -7.57 16
17 C 0.11 1.13 6.61 -3.91 -0.03 1.11 16
18 C -0.13 -1.19 5.22 -26.52 -0.14 -1.33 16
19 C -0.10 -1.11 2.74 -90.30 -0.25 -1.36 16
20 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16
21 C -0.14 -1.36 9.17 37.16 0.34 -1.02 16
22 C -0.04 -0.54 5.31 -27.62 -0.15 -0.69 16
23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
24 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16
25 H 0.07 0.61 7.95 -51.93 -0.41 0.20 16
26 H 0.06 1.27 8.01 -51.93 -0.42 0.85 16
27 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16
28 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16
29 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16
30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16
31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16
32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16
33 H 0.08 0.57 8.11 -51.93 -0.42 0.15 16
34 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16
35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16
36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16
37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
38 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16
39 H 0.08 1.04 8.11 -51.93 -0.42 0.62 16
LS Contribution 317.78 15.07 4.79 4.79
Total: -1.00 -34.89 317.78 -9.48 -44.37
By element:
Atomic # 1 Polarization: 2.32 SS G_CDS: -6.71 Total: -4.38 kcal
Atomic # 6 Polarization: -13.76 SS G_CDS: -2.85 Total: -16.61 kcal
Atomic # 7 Polarization: -45.75 SS G_CDS: 0.31 Total: -45.44 kcal
Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal
Total LS contribution 4.79 Total: 4.79 kcal
Total: -34.89 -9.48 -44.37 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259716240.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.199 kcal
(2) G-P(sol) polarization free energy of solvation -34.895 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.305 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.374 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.826 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds