Wall clock time and date at job start Mon Mar 30 2020 05:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30787 * 125.72467 * 2 1 4 4 C 1.34424 * 109.32763 * 180.23999 * 3 2 1 5 5 C 1.50694 * 126.10552 * 179.87732 * 4 3 2 6 6 C 1.53004 * 109.47175 * 269.68993 * 5 4 3 7 7 C 1.50699 * 109.46843 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00516 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99783 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99707 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99956 * 180.27458 * 9 7 6 12 12 H 1.48503 * 109.47407 * 269.72718 * 11 9 7 13 13 H 1.48505 * 109.47281 * 29.72474 * 11 9 7 14 14 H 1.48501 * 109.47274 * 149.72572 * 11 9 7 15 15 C 1.33869 * 107.79254 * 359.61946 * 4 3 2 16 16 N 1.34407 * 125.72728 * 179.76803 * 2 1 3 17 17 C 1.46471 * 128.44383 * 359.75946 * 16 2 1 18 18 C 1.53289 * 108.69623 * 197.38474 * 17 16 2 19 19 C 1.53115 * 109.70830 * 309.23604 * 18 17 16 20 20 H 1.08999 * 109.49611 * 309.95604 * 19 18 17 21 21 C 1.52996 * 109.49637 * 189.85356 * 19 18 17 22 22 C 1.50708 * 128.67919 * 180.17780 * 15 4 3 23 23 H 1.09002 * 109.47248 * 270.22913 * 1 2 3 24 24 H 1.08994 * 109.47320 * 30.23719 * 1 2 3 25 25 H 1.09005 * 109.46564 * 150.23335 * 1 2 3 26 26 H 1.09006 * 109.46887 * 149.69190 * 5 4 3 27 27 H 1.08997 * 109.46876 * 29.69239 * 5 4 3 28 28 H 1.09001 * 109.46361 * 60.00344 * 6 5 4 29 29 H 1.08997 * 109.46991 * 300.00234 * 6 5 4 30 30 H 0.97005 * 119.99656 * 179.97438 * 10 9 7 31 31 H 1.09005 * 109.60044 * 77.62859 * 17 16 2 32 32 H 1.08998 * 109.60397 * 317.15365 * 17 16 2 33 33 H 1.09001 * 109.42883 * 189.15978 * 18 17 16 34 34 H 1.09001 * 109.38855 * 69.28459 * 18 17 16 35 35 H 1.08998 * 109.47387 * 300.16511 * 21 19 18 36 36 H 1.08999 * 109.47370 * 60.16874 * 21 19 18 37 37 H 1.09002 * 109.46969 * 180.16514 * 21 19 18 38 38 H 1.08997 * 109.74600 * 315.36197 * 22 15 4 39 39 H 1.08998 * 109.74926 * 76.08486 * 22 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5602 0.6823 -0.0053 5 6 4.7557 1.5996 -0.0097 6 6 5.1594 1.9045 -1.4538 7 6 6.3553 2.8213 -1.4581 8 1 6.7844 3.1537 -0.5244 9 6 6.9012 3.2367 -2.6542 10 7 6.3778 2.8331 -3.7912 11 14 8.3884 4.3670 -2.6596 12 1 7.9354 5.7812 -2.6673 13 1 9.2057 4.1157 -1.4454 14 1 9.2066 4.1027 -3.8704 15 6 3.5928 -0.6560 -0.0002 16 7 2.2918 -1.0911 0.0044 17 6 1.8923 -2.5002 0.0149 18 6 3.0929 -3.3481 0.4502 19 6 4.3188 -2.9763 -0.3884 20 1 4.0546 -2.9920 -1.4458 21 6 5.4409 -3.9829 -0.1267 22 6 4.7919 -1.5689 0.0007 23 1 -0.3634 0.0041 1.0277 24 1 -0.3634 0.8878 -0.5175 25 1 -0.3633 -0.8921 -0.5102 26 1 5.5862 1.1166 0.5054 27 1 4.5026 2.5288 0.5007 28 1 4.3289 2.3874 -1.9688 29 1 5.4124 0.9752 -1.9641 30 1 6.7616 3.1256 -4.6327 31 1 1.5775 -2.7985 -0.9851 32 1 1.0706 -2.6422 0.7169 33 1 2.8621 -4.4038 0.3071 34 1 3.3041 -3.1626 1.5033 35 1 5.7034 -3.9675 0.9311 36 1 5.1045 -4.9821 -0.4031 37 1 6.3144 -3.7161 -0.7217 38 1 5.5255 -1.2139 -0.7231 39 1 5.2366 -1.5919 0.9956 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259716240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:35 Heat of formation + Delta-G solvation = 24.825529 kcal Electronic energy + Delta-G solvation = -18242.827668 eV Core-core repulsion = 15570.912837 eV Total energy + Delta-G solvation = -2671.914831 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.97159 -37.18201 -34.50548 -32.93473 -31.70245 -30.51718 -29.47817 -27.90060 -25.85332 -23.91202 -23.38454 -21.14712 -20.65224 -19.35632 -18.59329 -16.34900 -15.93334 -15.67370 -14.74079 -14.41282 -14.29107 -14.06485 -13.66669 -13.20287 -12.92269 -12.68065 -12.45840 -12.30613 -12.22947 -12.07283 -11.87206 -11.61490 -10.95834 -10.90469 -10.84090 -10.75556 -10.68283 -10.51812 -9.76016 -9.60265 -9.23722 -8.95086 -8.83118 -8.22626 -7.45333 -5.88191 -3.90171 2.46720 3.07991 3.39500 3.45031 3.48473 3.68468 4.43099 4.52180 4.55557 4.63029 4.79348 4.97515 5.09557 5.12225 5.27183 5.47139 5.48809 5.50382 5.58366 5.61237 5.66134 5.72851 5.83282 5.86036 5.94280 6.08365 6.19091 6.26147 6.31350 6.76262 6.87621 6.89747 7.14056 7.46669 7.68260 7.83956 8.01735 8.15595 8.55243 8.69812 9.17532 9.72726 11.23090 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.023049 B = 0.005840 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.517839 B = 4793.575209 C = 5641.039948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.191 3.809 3 N -0.486 5.486 4 C 0.038 3.962 5 C -0.032 4.032 6 C 0.034 3.966 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.056 3.944 10 N -0.896 5.896 11 Si 0.891 3.109 12 H -0.281 1.281 13 H -0.274 1.274 14 H -0.288 1.288 15 C -0.036 4.036 16 N -0.459 5.459 17 C 0.107 3.893 18 C -0.126 4.126 19 C -0.097 4.097 20 H 0.074 0.926 21 C -0.144 4.144 22 C -0.036 4.036 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.017 0.983 29 H 0.013 0.987 30 H 0.259 0.741 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.847 -15.623 8.465 19.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.070 4.070 3 N -0.206 5.206 4 C -0.090 4.090 5 C -0.071 4.071 6 C -0.004 4.004 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.207 1.207 13 H -0.199 1.199 14 H -0.214 1.214 15 C -0.148 4.148 16 N -0.145 5.145 17 C -0.016 4.016 18 C -0.164 4.164 19 C -0.115 4.115 20 H 0.093 0.907 21 C -0.202 4.202 22 C -0.074 4.074 23 H 0.091 0.909 24 H 0.106 0.894 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.036 0.964 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.167 -14.950 8.285 19.395 hybrid contribution 0.943 -0.223 -0.225 0.995 sum -8.224 -15.172 8.060 19.047 Atomic orbital electron populations 1.20058 0.85634 1.03461 1.02718 1.22984 0.95252 0.81506 1.07307 1.70370 1.02082 1.27770 1.20364 1.20780 0.93080 0.91242 1.03895 1.20102 0.89887 0.95609 1.01473 1.18999 0.95922 0.96340 0.89130 1.21290 1.13357 1.28613 0.92245 0.92621 1.25018 0.97264 0.96488 0.95695 1.69992 1.41198 1.45194 0.97187 0.86619 0.82942 0.81200 0.77373 1.20713 1.19872 1.21358 1.20744 0.84944 0.94980 1.14132 1.45082 1.06472 1.06393 1.56571 1.21834 0.98391 0.78978 1.02379 1.21920 0.94156 0.99336 1.00947 1.21250 0.94915 0.95302 1.00065 0.90745 1.21799 0.98342 0.98103 1.01921 1.20223 0.93500 0.91050 1.02647 0.90859 0.89409 0.91554 0.92336 0.92102 0.96415 0.96871 0.93173 0.90391 0.89795 0.90013 0.90967 0.92542 0.92761 0.91923 0.88922 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.71 10.24 36.00 0.37 -0.34 16 2 C 0.19 3.28 7.94 -155.75 -1.24 2.05 16 3 N -0.49 -10.51 11.27 -7.27 -0.08 -10.59 16 4 C 0.04 0.84 6.34 -82.99 -0.53 0.31 16 5 C -0.03 -0.75 5.54 -27.88 -0.15 -0.91 16 6 C 0.03 0.94 4.96 -27.88 -0.14 0.80 16 7 C -0.52 -15.27 9.11 -34.44 -0.31 -15.58 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.90 -28.02 13.29 55.43 0.74 -27.28 16 11 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 C -0.04 -0.67 6.56 -81.73 -0.54 -1.20 16 16 N -0.46 -7.23 3.13 -109.43 -0.34 -7.57 16 17 C 0.11 1.13 6.61 -3.91 -0.03 1.11 16 18 C -0.13 -1.19 5.22 -26.52 -0.14 -1.33 16 19 C -0.10 -1.11 2.74 -90.30 -0.25 -1.36 16 20 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 21 C -0.14 -1.36 9.17 37.16 0.34 -1.02 16 22 C -0.04 -0.54 5.31 -27.62 -0.15 -0.69 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.07 0.61 7.95 -51.93 -0.41 0.20 16 26 H 0.06 1.27 8.01 -51.93 -0.42 0.85 16 27 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.57 8.11 -51.93 -0.42 0.15 16 34 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.08 1.04 8.11 -51.93 -0.42 0.62 16 LS Contribution 317.78 15.07 4.79 4.79 Total: -1.00 -34.89 317.78 -9.48 -44.37 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -6.71 Total: -4.38 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -2.85 Total: -16.61 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.31 Total: -45.44 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.89 -9.48 -44.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259716240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.199 kcal (2) G-P(sol) polarization free energy of solvation -34.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds