Wall clock time and date at job start Mon Mar 30 2020 05:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30787 * 125.72467 * 2 1 4 4 C 1.34424 * 109.32763 * 180.23999 * 3 2 1 5 5 C 1.50694 * 126.10552 * 179.87732 * 4 3 2 6 6 C 1.53004 * 109.47175 * 269.68993 * 5 4 3 7 7 C 1.50699 * 109.46843 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00516 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99783 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99707 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99956 * 180.27458 * 9 7 6 12 12 H 1.48503 * 109.47407 * 269.72718 * 11 9 7 13 13 H 1.48505 * 109.47281 * 29.72474 * 11 9 7 14 14 H 1.48501 * 109.47274 * 149.72572 * 11 9 7 15 15 C 1.33869 * 107.79254 * 359.61946 * 4 3 2 16 16 N 1.34407 * 125.72728 * 179.76803 * 2 1 3 17 17 C 1.46471 * 128.44383 * 359.75946 * 16 2 1 18 18 C 1.53289 * 108.69623 * 197.38474 * 17 16 2 19 19 C 1.53115 * 109.70830 * 309.23604 * 18 17 16 20 20 H 1.08999 * 109.49611 * 309.95604 * 19 18 17 21 21 C 1.52996 * 109.49637 * 189.85356 * 19 18 17 22 22 C 1.50708 * 128.67919 * 180.17780 * 15 4 3 23 23 H 1.09002 * 109.47248 * 270.22913 * 1 2 3 24 24 H 1.08994 * 109.47320 * 30.23719 * 1 2 3 25 25 H 1.09005 * 109.46564 * 150.23335 * 1 2 3 26 26 H 1.09006 * 109.46887 * 149.69190 * 5 4 3 27 27 H 1.08997 * 109.46876 * 29.69239 * 5 4 3 28 28 H 1.09001 * 109.46361 * 60.00344 * 6 5 4 29 29 H 1.08997 * 109.46991 * 300.00234 * 6 5 4 30 30 H 0.97005 * 119.99656 * 179.97438 * 10 9 7 31 31 H 1.09005 * 109.60044 * 77.62859 * 17 16 2 32 32 H 1.08998 * 109.60397 * 317.15365 * 17 16 2 33 33 H 1.09001 * 109.42883 * 189.15978 * 18 17 16 34 34 H 1.09001 * 109.38855 * 69.28459 * 18 17 16 35 35 H 1.08998 * 109.47387 * 300.16511 * 21 19 18 36 36 H 1.08999 * 109.47370 * 60.16874 * 21 19 18 37 37 H 1.09002 * 109.46969 * 180.16514 * 21 19 18 38 38 H 1.08997 * 109.74600 * 315.36197 * 22 15 4 39 39 H 1.08998 * 109.74926 * 76.08486 * 22 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5602 0.6823 -0.0053 5 6 4.7557 1.5996 -0.0097 6 6 5.1594 1.9045 -1.4538 7 6 6.3553 2.8213 -1.4581 8 1 6.7844 3.1537 -0.5244 9 6 6.9012 3.2367 -2.6542 10 7 6.3778 2.8331 -3.7912 11 14 8.3884 4.3670 -2.6596 12 1 7.9354 5.7812 -2.6673 13 1 9.2057 4.1157 -1.4454 14 1 9.2066 4.1027 -3.8704 15 6 3.5928 -0.6560 -0.0002 16 7 2.2918 -1.0911 0.0044 17 6 1.8923 -2.5002 0.0149 18 6 3.0929 -3.3481 0.4502 19 6 4.3188 -2.9763 -0.3884 20 1 4.0546 -2.9920 -1.4458 21 6 5.4409 -3.9829 -0.1267 22 6 4.7919 -1.5689 0.0007 23 1 -0.3634 0.0041 1.0277 24 1 -0.3634 0.8878 -0.5175 25 1 -0.3633 -0.8921 -0.5102 26 1 5.5862 1.1166 0.5054 27 1 4.5026 2.5288 0.5007 28 1 4.3289 2.3874 -1.9688 29 1 5.4124 0.9752 -1.9641 30 1 6.7616 3.1256 -4.6327 31 1 1.5775 -2.7985 -0.9851 32 1 1.0706 -2.6422 0.7169 33 1 2.8621 -4.4038 0.3071 34 1 3.3041 -3.1626 1.5033 35 1 5.7034 -3.9675 0.9311 36 1 5.1045 -4.9821 -0.4031 37 1 6.3144 -3.7161 -0.7217 38 1 5.5255 -1.2139 -0.7231 39 1 5.2366 -1.5919 0.9956 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259716240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:35 Heat of formation + Delta-G solvation = 3.894769 kcal Electronic energy + Delta-G solvation = -18243.735294 eV Core-core repulsion = 15570.912837 eV Total energy + Delta-G solvation = -2672.822457 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.30068 -38.19505 -36.28189 -34.73395 -33.08518 -32.15231 -30.61701 -29.01743 -27.67912 -25.33650 -24.55188 -22.99315 -21.78006 -20.79107 -19.79799 -18.54203 -17.23357 -16.88440 -16.48035 -15.71268 -15.51379 -15.34664 -14.72189 -14.51874 -14.43604 -14.00770 -13.89597 -13.80912 -13.34635 -13.14437 -13.11411 -12.94610 -12.81518 -12.51520 -12.40951 -11.90443 -11.81288 -11.70271 -11.65280 -11.55401 -11.26306 -10.70903 -10.55576 -10.24612 -8.92850 -8.18887 -6.32042 1.12938 1.39493 1.42733 1.53903 1.94318 2.16238 2.42585 3.12933 3.54373 3.60075 3.69512 3.71546 3.92386 4.17182 4.30041 4.34874 4.44435 4.53013 4.59573 4.70071 4.73176 4.76343 4.83854 4.85415 4.87499 4.95380 5.01402 5.09405 5.15091 5.19219 5.29776 5.42054 5.47495 5.51907 5.71523 5.82276 5.89700 6.23425 6.48181 6.84223 7.26984 7.37088 8.93225 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.023049 B = 0.005840 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.517839 B = 4793.575209 C = 5641.039948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.193 3.807 3 N -0.542 5.542 4 C -0.016 4.016 5 C -0.015 4.015 6 C 0.049 3.951 7 C -0.543 4.543 8 H 0.064 0.936 9 C -0.002 4.002 10 N -0.936 5.936 11 Si 0.972 3.028 12 H -0.273 1.273 13 H -0.259 1.259 14 H -0.279 1.279 15 C -0.029 4.029 16 N -0.454 5.454 17 C 0.095 3.905 18 C -0.119 4.119 19 C -0.093 4.093 20 H 0.061 0.939 21 C -0.139 4.139 22 C -0.038 4.038 23 H 0.097 0.903 24 H 0.081 0.919 25 H 0.100 0.900 26 H 0.070 0.930 27 H 0.046 0.954 28 H -0.028 1.028 29 H -0.012 1.012 30 H 0.264 0.736 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.062 0.938 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.299 -17.809 9.604 22.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.070 4.070 3 N -0.263 5.263 4 C -0.143 4.143 5 C -0.054 4.054 6 C 0.012 3.988 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.200 4.200 10 N -0.577 5.577 11 Si 0.795 3.205 12 H -0.199 1.199 13 H -0.182 1.182 14 H -0.204 1.204 15 C -0.143 4.143 16 N -0.139 5.139 17 C -0.026 4.026 18 C -0.156 4.156 19 C -0.112 4.112 20 H 0.079 0.921 21 C -0.197 4.197 22 C -0.077 4.077 23 H 0.116 0.884 24 H 0.100 0.900 25 H 0.118 0.882 26 H 0.088 0.912 27 H 0.065 0.935 28 H -0.009 1.009 29 H 0.007 0.993 30 H 0.072 0.928 31 H 0.111 0.889 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.634 -17.168 9.438 21.832 hybrid contribution 0.995 0.407 -0.607 1.235 sum -8.639 -16.761 8.831 20.822 Atomic orbital electron populations 1.20283 0.81749 1.04836 1.04671 1.23919 0.97212 0.80994 1.04870 1.70238 1.02504 1.30730 1.22876 1.20584 0.92910 0.92679 1.08176 1.19735 0.91695 0.95873 0.98068 1.18754 0.94106 0.94471 0.91481 1.21690 1.14053 1.29330 0.92996 0.91809 1.26073 1.00811 0.98105 0.94977 1.70146 1.43001 1.46459 0.98054 0.85352 0.78417 0.78548 0.78140 1.19874 1.18243 1.20424 1.21020 0.87158 0.94265 1.11842 1.45386 1.05092 1.08423 1.54961 1.22367 0.99999 0.75761 1.04424 1.21941 0.92274 1.01164 1.00269 1.21228 0.96900 0.93290 0.99751 0.92055 1.21765 0.97076 0.98475 1.02347 1.20313 0.91858 0.92959 1.02547 0.88449 0.90032 0.88167 0.91176 0.93487 1.00941 0.99336 0.92775 0.88907 0.86348 0.86214 0.90829 0.91614 0.90409 0.93183 0.91927 0.89385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.21 10.24 71.23 0.73 -0.48 16 2 C 0.19 6.53 7.94 138.24 1.10 7.63 16 3 N -0.54 -24.49 11.27 -176.92 -1.99 -26.48 16 4 C -0.02 -0.75 6.34 41.17 0.26 -0.49 16 5 C -0.02 -0.76 5.54 29.85 0.17 -0.60 16 6 C 0.05 2.97 4.96 29.85 0.15 3.12 16 7 C -0.54 -33.42 9.11 25.60 0.23 -33.18 16 8 H 0.06 3.73 7.74 -2.91 -0.02 3.70 16 9 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 10 N -0.94 -60.59 13.29 21.45 0.28 -60.31 16 11 Si 0.97 46.38 29.54 68.60 2.03 48.41 16 12 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 14 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 15 C -0.03 -1.08 6.56 40.73 0.27 -0.81 16 16 N -0.45 -13.72 3.13 -500.11 -1.57 -15.29 16 17 C 0.09 1.65 6.61 86.48 0.57 2.22 16 18 C -0.12 -1.80 5.22 30.73 0.16 -1.64 16 19 C -0.09 -1.98 2.74 -10.59 -0.03 -2.01 16 20 H 0.06 1.47 8.12 -2.39 -0.02 1.45 16 21 C -0.14 -2.31 9.17 71.98 0.66 -1.65 16 22 C -0.04 -1.18 5.31 30.02 0.16 -1.02 16 23 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.10 1.44 7.95 -2.38 -0.02 1.42 16 26 H 0.07 3.24 8.01 -2.38 -0.02 3.22 16 27 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 28 H -0.03 -1.89 8.14 -2.39 -0.02 -1.91 16 29 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 30 H 0.26 15.86 8.31 -92.70 -0.77 15.09 16 31 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.12 1.00 8.11 -2.39 -0.02 0.98 16 34 H 0.07 1.15 8.11 -2.39 -0.02 1.13 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.09 2.43 8.11 -2.39 -0.02 2.41 16 Total: -1.00 -81.58 317.78 4.64 -76.95 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: 1.00 Total: 5.32 kcal Atomic # 6 Polarization: -33.48 SS G_CDS: 4.89 Total: -28.59 kcal Atomic # 7 Polarization: -98.80 SS G_CDS: -3.28 Total: -102.08 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -81.58 4.64 -76.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259716240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.842 kcal (2) G-P(sol) polarization free energy of solvation -81.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds