Wall clock time and date at job start Mon Mar 30 2020 06:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47426 * 2 1 4 4 C 1.52998 * 109.47367 * 120.00243 * 2 1 3 5 5 H 1.08999 * 109.47196 * 300.67556 * 4 2 1 6 6 C 1.50702 * 109.47255 * 60.67559 * 4 2 1 7 7 H 1.08000 * 120.00209 * 115.81195 * 6 4 2 8 8 C 1.37881 * 119.99588 * 295.81727 * 6 4 2 9 9 N 1.31514 * 120.00089 * 337.64765 * 8 6 4 10 10 Si 1.86804 * 119.99726 * 157.65444 * 8 6 4 11 11 H 1.48498 * 109.47282 * 59.99609 * 10 8 6 12 12 H 1.48495 * 109.46907 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.46949 * 299.99520 * 10 8 6 14 14 C 1.50695 * 109.47132 * 180.67602 * 4 2 1 15 15 C 1.35315 * 126.13103 * 325.02436 * 14 4 2 16 16 C 1.39868 * 107.92372 * 179.97438 * 15 14 4 17 17 N 1.30842 * 108.20116 * 359.97438 * 16 15 14 18 18 N 1.34950 * 126.12707 * 144.71666 * 14 4 2 19 19 C 1.46508 * 126.03564 * 0.03002 * 18 14 4 20 20 C 1.53783 * 113.61419 * 219.14086 * 19 18 14 21 21 C 1.53953 * 87.01678 * 220.04907 * 20 19 18 22 22 C 1.53776 * 87.11375 * 25.36249 * 21 20 19 23 23 H 1.09001 * 109.47304 * 52.66679 * 1 2 3 24 24 H 1.09001 * 109.47663 * 172.67393 * 1 2 3 25 25 H 1.08998 * 109.47015 * 292.67358 * 1 2 3 26 26 H 1.09010 * 109.47172 * 240.00274 * 2 1 3 27 27 H 1.08992 * 109.47460 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47031 * 300.00435 * 3 2 1 29 29 H 1.09001 * 109.46912 * 59.99740 * 3 2 1 30 30 H 0.96997 * 119.99616 * 180.02562 * 9 8 6 31 31 H 1.08003 * 126.03417 * 359.93987 * 15 14 4 32 32 H 1.07998 * 125.90305 * 179.97438 * 16 15 14 33 33 H 1.08993 * 112.84989 * 350.33535 * 19 18 14 34 34 H 1.09002 * 113.61490 * 334.57099 * 20 19 18 35 35 H 1.08996 * 113.61239 * 105.46865 * 20 19 18 36 36 H 1.09004 * 113.53432 * 270.80645 * 21 20 19 37 37 H 1.09001 * 113.74405 * 139.94412 * 21 20 19 38 38 H 1.09003 * 113.61472 * 220.09329 * 22 21 20 39 39 H 1.09000 * 113.61456 * 89.18776 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6668 -0.2146 2.1392 6 6 1.5514 -2.1469 1.2408 7 1 2.2591 -2.9599 1.1732 8 6 0.2008 -2.4132 1.3194 9 7 -0.6170 -1.5190 1.8304 10 14 -0.4671 -4.0441 0.7002 11 1 0.1625 -5.1562 1.4567 12 1 -1.9384 -4.0831 0.8968 13 1 -0.1562 -4.1899 -0.7446 14 6 3.5468 -0.7068 1.2575 15 6 4.3516 -0.7895 0.1728 16 6 5.6774 -0.7399 0.6157 17 7 5.6689 -0.6308 1.9195 18 7 4.3355 -0.6031 2.3477 19 6 3.8779 -0.4851 3.7345 20 6 4.7151 0.4902 4.5786 21 6 4.5906 -0.5250 5.7292 22 6 4.3969 -1.6050 4.6517 23 1 -0.3634 0.6232 -0.8171 24 1 -0.3634 -1.0192 -0.1310 25 1 -0.3633 0.3961 0.9482 26 1 1.8933 -0.5138 -0.8901 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 -1.5671 -1.7066 1.8861 31 1 4.0273 -0.8787 -0.8535 32 1 6.5563 -0.7841 -0.0104 33 1 2.8035 -0.3192 3.8130 34 1 5.7353 0.6166 4.2162 35 1 4.2143 1.4381 4.7754 36 1 3.7113 -0.3690 6.3542 37 1 5.5058 -0.6458 6.3089 38 1 3.6396 -2.3460 4.9075 39 1 5.3300 -2.0525 4.3094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259730398.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:47 Heat of formation + Delta-G solvation = 96.189669 kcal Electronic energy + Delta-G solvation = -19041.191573 eV Core-core repulsion = 16372.371323 eV Total energy + Delta-G solvation = -2668.820250 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.58220 -37.94757 -36.08933 -32.09721 -31.10754 -29.60400 -26.93309 -25.63877 -25.40738 -24.72364 -23.12807 -20.91806 -19.92182 -18.52944 -18.31833 -16.43561 -16.38312 -15.13141 -14.58113 -14.17741 -14.08203 -13.31467 -13.19380 -12.83206 -12.57325 -12.40255 -12.22851 -11.89908 -11.71192 -11.41826 -11.01953 -10.91972 -10.76193 -10.67233 -10.40410 -10.30743 -10.15949 -10.09997 -9.82763 -9.54195 -9.32253 -9.22484 -8.32569 -7.91545 -7.49331 -6.18428 -4.07935 2.79822 3.26263 3.31058 3.32399 3.38357 3.73652 4.37718 4.73420 4.83621 5.07737 5.09269 5.14664 5.54594 5.74892 5.84150 5.89635 5.99415 6.03549 6.08008 6.15805 6.20222 6.24784 6.36707 6.38116 6.62899 6.68477 6.78568 6.84590 6.92507 6.99003 7.16597 7.33313 7.48388 7.52095 7.75045 7.82466 7.95792 8.00843 8.27080 8.62044 8.85391 9.45657 10.85530 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019294 B = 0.008772 C = 0.007620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.879142 B = 3191.050893 C = 3673.839112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.072 4.072 3 C -0.148 4.148 4 C 0.104 3.896 5 H 0.043 0.957 6 C -0.520 4.520 7 H 0.057 0.943 8 C 0.078 3.922 9 N -0.865 5.865 10 Si 0.877 3.123 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.150 3.850 15 C -0.301 4.301 16 C 0.036 3.964 17 N -0.328 5.328 18 N -0.362 5.362 19 C 0.143 3.857 20 C -0.142 4.142 21 C -0.139 4.139 22 C -0.142 4.142 23 H -0.002 1.002 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.037 0.963 29 H 0.041 0.959 30 H 0.263 0.737 31 H 0.135 0.865 32 H 0.168 0.832 33 H 0.128 0.872 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.857 3.448 2.492 7.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.091 4.091 3 C -0.205 4.205 4 C 0.084 3.916 5 H 0.061 0.939 6 C -0.558 4.558 7 H 0.076 0.924 8 C -0.125 4.125 9 N -0.501 5.501 10 Si 0.704 3.296 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.199 1.199 14 C 0.023 3.977 15 C -0.330 4.330 16 C -0.150 4.150 17 N -0.149 5.149 18 N -0.143 5.143 19 C 0.040 3.960 20 C -0.180 4.180 21 C -0.177 4.177 22 C -0.180 4.180 23 H 0.017 0.983 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.153 0.847 32 H 0.185 0.815 33 H 0.145 0.855 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.348 3.599 3.739 8.199 hybrid contribution -0.900 -1.029 -1.254 1.855 sum 5.448 2.570 2.484 6.516 Atomic orbital electron populations 1.22206 0.94417 1.01705 0.99285 1.21200 0.96543 0.92765 0.98604 1.21975 1.00394 0.98306 0.99857 1.17684 0.81306 0.97223 0.95400 0.93869 1.20762 0.91724 0.90583 1.52711 0.92448 1.24729 0.96898 0.96451 0.94468 1.70230 1.04361 1.35229 1.40297 0.86900 0.77686 0.84707 0.80288 1.20282 1.21240 1.19924 1.21983 0.96408 0.93394 0.85956 1.21041 0.91685 1.20921 0.99321 1.23592 0.97890 1.01046 0.92424 1.77029 0.97713 1.27263 1.12900 1.48454 1.03407 1.56723 1.05740 1.22816 0.99556 0.97521 0.76112 1.23338 1.01549 0.97428 0.95707 1.22726 1.02103 0.96730 0.96137 1.23298 1.02176 0.97014 0.95512 0.98273 0.91220 0.91057 0.93001 0.93385 0.94428 0.93944 0.92640 0.84729 0.81483 0.85460 0.88856 0.91224 0.89878 0.91064 0.90637 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 7.36 37.15 0.27 -2.42 16 2 C -0.07 -1.57 2.13 -90.62 -0.19 -1.76 16 3 C -0.15 -2.86 8.90 37.16 0.33 -2.52 16 4 C 0.10 2.44 1.69 -92.93 -0.16 2.29 16 5 H 0.04 1.09 6.78 -51.93 -0.35 0.74 16 6 C -0.52 -13.47 8.40 -34.44 -0.29 -13.76 16 7 H 0.06 1.57 7.84 -52.49 -0.41 1.15 16 8 C 0.08 1.99 3.27 -17.82 -0.06 1.93 16 9 N -0.86 -22.28 9.59 55.43 0.53 -21.75 16 10 Si 0.88 20.23 29.54 -169.99 -5.02 15.20 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 14 C 0.15 3.30 4.89 -82.27 -0.40 2.89 16 15 C -0.30 -6.16 8.98 -40.01 -0.36 -6.52 16 16 C 0.04 0.67 12.03 -17.36 -0.21 0.46 16 17 N -0.33 -6.57 12.03 30.62 0.37 -6.20 16 18 N -0.36 -7.44 3.68 -49.91 -0.18 -7.63 16 19 C 0.14 2.56 4.55 -67.11 -0.31 2.25 16 20 C -0.14 -2.09 7.78 -25.83 -0.20 -2.29 16 21 C -0.14 -1.79 8.09 -25.83 -0.21 -2.00 16 22 C -0.14 -2.25 7.88 -25.92 -0.20 -2.46 16 23 H 0.00 -0.03 8.14 -51.93 -0.42 -0.46 16 24 H 0.07 1.71 5.04 -51.93 -0.26 1.45 16 25 H 0.07 1.71 6.84 -51.93 -0.36 1.36 16 26 H 0.05 1.15 7.31 -51.92 -0.38 0.77 16 27 H 0.05 0.92 6.44 -51.93 -0.33 0.58 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 31 H 0.13 2.63 7.39 -52.48 -0.39 2.25 16 32 H 0.17 2.47 8.06 -52.49 -0.42 2.05 16 33 H 0.13 2.40 6.81 -51.93 -0.35 2.05 16 34 H 0.09 1.46 7.74 -51.93 -0.40 1.06 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 305.78 15.07 4.61 4.61 Total: -1.00 -26.85 305.78 -7.86 -34.71 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -6.18 Total: 4.97 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: -1.98 Total: -23.91 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.72 Total: -35.58 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -26.85 -7.86 -34.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259730398.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.898 kcal (2) G-P(sol) polarization free energy of solvation -26.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds