Wall clock time and date at job start Mon Mar 30 2020 06:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47047 * 2 1 4 4 C 1.53004 * 109.46845 * 119.99716 * 2 1 3 5 5 H 1.08998 * 109.47030 * 303.86109 * 4 2 1 6 6 C 1.50703 * 109.47071 * 183.85643 * 4 2 1 7 7 H 1.08004 * 119.99593 * 298.52750 * 6 4 2 8 8 C 1.37878 * 119.99884 * 118.52332 * 6 4 2 9 9 N 1.31511 * 119.99577 * 174.26538 * 8 6 4 10 10 Si 1.86801 * 119.99959 * 354.26924 * 8 6 4 11 11 H 1.48501 * 109.47289 * 86.93656 * 10 8 6 12 12 H 1.48503 * 109.46910 * 206.93472 * 10 8 6 13 13 H 1.48494 * 109.47230 * 326.93416 * 10 8 6 14 14 C 1.50704 * 109.47151 * 63.85716 * 4 2 1 15 15 C 1.35315 * 126.12428 * 35.18641 * 14 4 2 16 16 C 1.39875 * 107.92061 * 180.26388 * 15 14 4 17 17 N 1.30844 * 108.19966 * 359.73707 * 16 15 14 18 18 N 1.34945 * 126.12918 * 214.99845 * 14 4 2 19 19 C 1.46495 * 126.03629 * 359.97438 * 18 14 4 20 20 C 1.53780 * 113.61644 * 140.57766 * 19 18 14 21 21 C 1.53963 * 87.01787 * 89.23144 * 20 19 18 22 22 C 1.53776 * 113.61818 * 238.18974 * 19 18 14 23 23 H 1.08995 * 109.47476 * 299.99813 * 1 2 3 24 24 H 1.09000 * 109.46854 * 60.00709 * 1 2 3 25 25 H 1.09001 * 109.46595 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47206 * 239.99762 * 2 1 3 27 27 H 1.09006 * 109.47198 * 66.09906 * 3 2 1 28 28 H 1.08998 * 109.47371 * 186.10128 * 3 2 1 29 29 H 1.09000 * 109.47366 * 306.10157 * 3 2 1 30 30 H 0.97004 * 119.99243 * 180.02562 * 9 8 6 31 31 H 1.07999 * 126.04412 * 0.02562 * 15 14 4 32 32 H 1.07996 * 125.90032 * 179.71584 * 16 15 14 33 33 H 1.09010 * 112.85264 * 9.38560 * 19 18 14 34 34 H 1.08998 * 113.61724 * 203.75004 * 20 19 18 35 35 H 1.08996 * 113.61259 * 334.65727 * 20 19 18 36 36 H 1.09000 * 113.53381 * 270.81580 * 21 20 19 37 37 H 1.08997 * 113.73972 * 139.94582 * 21 20 19 38 38 H 1.09004 * 113.61651 * 25.34791 * 22 19 18 39 39 H 1.08999 * 113.61921 * 156.25274 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6212 -0.2488 2.1379 6 6 3.5440 -0.6390 1.2981 7 1 4.1347 -1.0785 0.5079 8 6 4.1658 -0.0027 2.3514 9 7 5.4767 -0.0281 2.4535 10 14 3.1463 0.8953 3.6334 11 1 2.7320 -0.0586 4.6934 12 1 3.9565 1.9840 4.2363 13 1 1.9400 1.4745 2.9896 14 6 1.6172 -2.1670 1.2025 15 6 1.5220 -2.9348 0.0924 16 6 1.0920 -4.2067 0.4843 17 7 0.9400 -4.2043 1.7839 18 7 1.2690 -2.9288 2.2606 19 6 1.2356 -2.4966 3.6599 20 6 0.0398 -3.0555 4.4489 21 6 0.9320 -4.2630 4.7898 22 6 2.1379 -3.3311 4.5842 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.7686 1.9238 0.9396 28 1 3.1245 1.4444 -0.1092 29 1 1.5903 1.9869 -0.8303 30 1 5.9141 0.4193 3.1947 31 1 1.7362 -2.6200 -0.9183 32 1 0.9155 -5.0458 -0.1723 33 1 1.3696 -1.4208 3.7741 34 1 -0.2306 -2.4536 5.3165 35 1 -0.8167 -3.3070 3.8235 36 1 0.8727 -5.0684 4.0577 37 1 0.8216 -4.6145 5.8156 38 1 2.9728 -3.8049 4.0679 39 1 2.4422 -2.8048 5.4889 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259730400.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:49 Heat of formation + Delta-G solvation = 83.047641 kcal Electronic energy + Delta-G solvation = -19262.175174 eV Core-core repulsion = 16592.785043 eV Total energy + Delta-G solvation = -2669.390131 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.70785 -37.90425 -36.08338 -32.39355 -31.03352 -29.55706 -27.47072 -26.07097 -25.41928 -24.93758 -22.94222 -20.82334 -20.55722 -18.71075 -17.80330 -17.19369 -16.17273 -15.18100 -14.60739 -14.43753 -14.06284 -13.48171 -13.30392 -13.13475 -12.72729 -12.57498 -12.34587 -12.18303 -11.81358 -11.76248 -11.45414 -10.97814 -10.75243 -10.63452 -10.50483 -10.33191 -10.25680 -10.15150 -9.83316 -9.66033 -9.58890 -9.24004 -8.66861 -8.33492 -7.56244 -6.22370 -4.20338 2.75332 3.07890 3.17460 3.20231 3.23077 3.69944 4.24162 4.66233 4.89688 5.06608 5.13621 5.16178 5.50817 5.64726 5.75407 5.82806 5.83854 5.87874 5.95603 6.04944 6.08350 6.20040 6.31783 6.34906 6.38551 6.49984 6.52990 6.56495 6.63228 6.64787 6.80542 6.91749 7.09486 7.25504 7.30996 7.49554 7.54369 7.91126 8.37673 8.56691 8.85812 9.38352 10.90599 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.011786 C = 0.008887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.197304 B = 2375.171612 C = 3149.910198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.077 4.077 3 C -0.134 4.134 4 C 0.069 3.931 5 H 0.043 0.957 6 C -0.497 4.497 7 H 0.080 0.920 8 C 0.080 3.920 9 N -0.889 5.889 10 Si 0.855 3.145 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.257 1.257 14 C 0.152 3.848 15 C -0.300 4.300 16 C 0.039 3.961 17 N -0.323 5.323 18 N -0.355 5.355 19 C 0.137 3.863 20 C -0.144 4.144 21 C -0.133 4.133 22 C -0.146 4.146 23 H 0.042 0.958 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.042 0.958 28 H 0.071 0.929 29 H 0.034 0.966 30 H 0.266 0.734 31 H 0.136 0.864 32 H 0.169 0.831 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.606 -2.469 1.172 9.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.096 4.096 3 C -0.191 4.191 4 C 0.048 3.952 5 H 0.061 0.939 6 C -0.535 4.535 7 H 0.098 0.902 8 C -0.123 4.123 9 N -0.526 5.526 10 Si 0.682 3.318 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.182 1.182 14 C 0.024 3.976 15 C -0.329 4.329 16 C -0.147 4.147 17 N -0.144 5.144 18 N -0.137 5.137 19 C 0.034 3.966 20 C -0.183 4.183 21 C -0.171 4.171 22 C -0.184 4.184 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.154 0.846 32 H 0.186 0.814 33 H 0.122 0.878 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.764 -3.068 2.450 10.524 hybrid contribution -0.016 0.964 0.052 0.966 sum -9.780 -2.104 2.502 10.312 Atomic orbital electron populations 1.21959 0.97479 1.01068 1.00200 1.21112 0.92840 0.96429 0.99241 1.21727 1.02549 0.95359 0.99480 1.18155 0.97325 0.84391 0.95288 0.93918 1.20748 0.87604 1.36232 1.08888 0.90225 1.25013 0.94669 0.95762 0.96896 1.69879 1.08210 1.43059 1.31470 0.87281 0.81328 0.80716 0.82449 1.19824 1.21127 1.18225 1.22010 0.92451 0.96787 0.86324 1.20964 1.18727 0.94149 0.99019 1.23611 1.00278 0.98025 0.92750 1.77070 1.25775 0.99955 1.11605 1.48010 1.52597 1.07967 1.05091 1.21985 0.97996 0.98765 0.77872 1.23251 0.97194 0.98218 0.99597 1.22921 0.95412 0.97387 1.01333 1.23242 0.97946 0.98009 0.99186 0.93923 0.93760 0.92934 0.91554 0.93859 0.91046 0.94700 0.92424 0.84638 0.81351 0.87847 0.89334 0.90707 0.88625 0.91990 0.90435 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 8.98 37.16 0.33 -2.21 16 2 C -0.08 -1.50 2.19 -90.62 -0.20 -1.70 16 3 C -0.13 -2.56 8.76 37.15 0.33 -2.23 16 4 C 0.07 1.54 1.50 -92.92 -0.14 1.40 16 5 H 0.04 0.97 3.60 -51.93 -0.19 0.78 16 6 C -0.50 -13.00 7.51 -34.44 -0.26 -13.26 16 7 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 8 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 9 N -0.89 -25.81 13.96 55.43 0.77 -25.04 16 10 Si 0.85 19.82 25.51 -169.99 -4.34 15.48 16 11 H -0.27 -6.01 6.53 56.52 0.37 -5.64 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.26 -5.65 5.63 56.52 0.32 -5.33 16 14 C 0.15 3.29 4.96 -82.26 -0.41 2.88 16 15 C -0.30 -5.98 9.35 -40.01 -0.37 -6.35 16 16 C 0.04 0.72 12.03 -17.36 -0.21 0.51 16 17 N -0.32 -6.45 10.91 30.63 0.33 -6.11 16 18 N -0.36 -7.40 3.68 -49.91 -0.18 -7.59 16 19 C 0.14 2.61 4.71 -67.12 -0.32 2.30 16 20 C -0.14 -2.22 7.72 -25.82 -0.20 -2.42 16 21 C -0.13 -2.02 7.70 -25.82 -0.20 -2.22 16 22 C -0.15 -2.56 7.88 -25.92 -0.20 -2.76 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.90 6.86 -51.93 -0.36 0.55 16 26 H 0.07 1.29 7.08 -51.93 -0.37 0.92 16 27 H 0.04 0.84 6.85 -51.93 -0.36 0.49 16 28 H 0.07 1.49 7.35 -51.93 -0.38 1.11 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.27 7.27 8.31 -40.82 -0.34 6.94 16 31 H 0.14 2.52 7.27 -52.49 -0.38 2.14 16 32 H 0.17 2.44 8.06 -52.49 -0.42 2.02 16 33 H 0.10 2.07 4.76 -51.92 -0.25 1.82 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.10 1.58 7.07 -51.93 -0.37 1.21 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 302.47 15.07 4.56 4.56 Total: -1.00 -28.58 302.47 -6.92 -35.50 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.12 Total: 7.23 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: -1.94 Total: -24.03 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.92 Total: -38.74 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.34 Total: 15.48 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.58 -6.92 -35.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259730400.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.544 kcal (2) G-P(sol) polarization free energy of solvation -28.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds