Wall clock time and date at job start Mon Mar 30 2020 06:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47047 * 2 1 4 4 C 1.53004 * 109.46845 * 119.99716 * 2 1 3 5 5 H 1.08998 * 109.47030 * 303.86109 * 4 2 1 6 6 C 1.50703 * 109.47071 * 183.85643 * 4 2 1 7 7 H 1.08004 * 119.99593 * 298.52750 * 6 4 2 8 8 C 1.37878 * 119.99884 * 118.52332 * 6 4 2 9 9 N 1.31511 * 119.99577 * 174.26538 * 8 6 4 10 10 Si 1.86801 * 119.99959 * 354.26924 * 8 6 4 11 11 H 1.48501 * 109.47289 * 86.93656 * 10 8 6 12 12 H 1.48503 * 109.46910 * 206.93472 * 10 8 6 13 13 H 1.48494 * 109.47230 * 326.93416 * 10 8 6 14 14 C 1.50704 * 109.47151 * 63.85716 * 4 2 1 15 15 C 1.35315 * 126.12428 * 35.18641 * 14 4 2 16 16 C 1.39875 * 107.92061 * 180.26388 * 15 14 4 17 17 N 1.30844 * 108.19966 * 359.73707 * 16 15 14 18 18 N 1.34945 * 126.12918 * 214.99845 * 14 4 2 19 19 C 1.46495 * 126.03629 * 359.97438 * 18 14 4 20 20 C 1.53780 * 113.61644 * 140.57766 * 19 18 14 21 21 C 1.53963 * 87.01787 * 89.23144 * 20 19 18 22 22 C 1.53776 * 113.61818 * 238.18974 * 19 18 14 23 23 H 1.08995 * 109.47476 * 299.99813 * 1 2 3 24 24 H 1.09000 * 109.46854 * 60.00709 * 1 2 3 25 25 H 1.09001 * 109.46595 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47206 * 239.99762 * 2 1 3 27 27 H 1.09006 * 109.47198 * 66.09906 * 3 2 1 28 28 H 1.08998 * 109.47371 * 186.10128 * 3 2 1 29 29 H 1.09000 * 109.47366 * 306.10157 * 3 2 1 30 30 H 0.97004 * 119.99243 * 180.02562 * 9 8 6 31 31 H 1.07999 * 126.04412 * 0.02562 * 15 14 4 32 32 H 1.07996 * 125.90032 * 179.71584 * 16 15 14 33 33 H 1.09010 * 112.85264 * 9.38560 * 19 18 14 34 34 H 1.08998 * 113.61724 * 203.75004 * 20 19 18 35 35 H 1.08996 * 113.61259 * 334.65727 * 20 19 18 36 36 H 1.09000 * 113.53381 * 270.81580 * 21 20 19 37 37 H 1.08997 * 113.73972 * 139.94582 * 21 20 19 38 38 H 1.09004 * 113.61651 * 25.34791 * 22 19 18 39 39 H 1.08999 * 113.61921 * 156.25274 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6212 -0.2488 2.1379 6 6 3.5440 -0.6390 1.2981 7 1 4.1347 -1.0785 0.5079 8 6 4.1658 -0.0027 2.3514 9 7 5.4767 -0.0281 2.4535 10 14 3.1463 0.8953 3.6334 11 1 2.7320 -0.0586 4.6934 12 1 3.9565 1.9840 4.2363 13 1 1.9400 1.4745 2.9896 14 6 1.6172 -2.1670 1.2025 15 6 1.5220 -2.9348 0.0924 16 6 1.0920 -4.2067 0.4843 17 7 0.9400 -4.2043 1.7839 18 7 1.2690 -2.9288 2.2606 19 6 1.2356 -2.4966 3.6599 20 6 0.0398 -3.0555 4.4489 21 6 0.9320 -4.2630 4.7898 22 6 2.1379 -3.3311 4.5842 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.7686 1.9238 0.9396 28 1 3.1245 1.4444 -0.1092 29 1 1.5903 1.9869 -0.8303 30 1 5.9141 0.4193 3.1947 31 1 1.7362 -2.6200 -0.9183 32 1 0.9155 -5.0458 -0.1723 33 1 1.3696 -1.4208 3.7741 34 1 -0.2306 -2.4536 5.3165 35 1 -0.8167 -3.3070 3.8235 36 1 0.8727 -5.0684 4.0577 37 1 0.8216 -4.6145 5.8156 38 1 2.9728 -3.8049 4.0679 39 1 2.4422 -2.8048 5.4889 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259730400.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:49 Heat of formation + Delta-G solvation = 67.101194 kcal Electronic energy + Delta-G solvation = -19262.866664 eV Core-core repulsion = 16592.785043 eV Total energy + Delta-G solvation = -2670.081621 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.23496 -39.25745 -37.73207 -34.39326 -32.57085 -31.14393 -29.22371 -27.58802 -26.70343 -26.31273 -24.80031 -22.27382 -22.06270 -20.23791 -19.36575 -19.17358 -17.73176 -16.56496 -16.34753 -15.86971 -15.65938 -15.06950 -14.91056 -14.77841 -14.25915 -14.22853 -13.88753 -13.43370 -13.34974 -13.21453 -13.05177 -12.72718 -12.36002 -12.15100 -11.88852 -11.84819 -11.81640 -11.59171 -11.48931 -11.36266 -11.13406 -11.00703 -10.66641 -9.88998 -9.16065 -8.31811 -6.33699 1.16290 1.24174 1.30321 1.37590 1.70746 2.14860 2.28132 3.05685 3.33176 3.58748 3.78987 3.85158 3.95463 4.20449 4.26815 4.34850 4.45511 4.53458 4.64273 4.67034 4.69954 4.89954 4.91574 4.94001 4.94425 5.00750 5.07347 5.11017 5.20409 5.23120 5.35547 5.39151 5.49466 5.55430 5.68005 5.76386 6.02149 6.21932 6.40101 6.70621 7.01993 7.28828 8.85167 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.011786 C = 0.008887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.197304 B = 2375.171612 C = 3149.910198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.077 4.077 3 C -0.131 4.131 4 C 0.075 3.925 5 H 0.041 0.959 6 C -0.490 4.490 7 H 0.032 0.968 8 C 0.028 3.972 9 N -0.943 5.943 10 Si 0.906 3.094 11 H -0.253 1.253 12 H -0.289 1.289 13 H -0.236 1.236 14 C 0.124 3.876 15 C -0.304 4.304 16 C 0.041 3.959 17 N -0.330 5.330 18 N -0.362 5.362 19 C 0.110 3.890 20 C -0.126 4.126 21 C -0.119 4.119 22 C -0.150 4.150 23 H 0.045 0.955 24 H 0.070 0.930 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.265 0.735 31 H 0.144 0.856 32 H 0.209 0.791 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.044 0.956 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.505 -2.563 1.905 12.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.097 4.097 3 C -0.188 4.188 4 C 0.054 3.946 5 H 0.059 0.941 6 C -0.529 4.529 7 H 0.050 0.950 8 C -0.170 4.170 9 N -0.582 5.582 10 Si 0.730 3.270 11 H -0.178 1.178 12 H -0.215 1.215 13 H -0.159 1.159 14 C -0.004 4.004 15 C -0.333 4.333 16 C -0.144 4.144 17 N -0.150 5.150 18 N -0.144 5.144 19 C 0.007 3.993 20 C -0.164 4.164 21 C -0.157 4.157 22 C -0.189 4.189 23 H 0.064 0.936 24 H 0.089 0.911 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.162 0.838 32 H 0.226 0.774 33 H 0.108 0.892 34 H 0.138 0.862 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.063 0.937 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.692 -3.171 3.179 13.463 hybrid contribution 0.948 0.913 -0.293 1.349 sum -11.744 -2.258 2.886 12.302 Atomic orbital electron populations 1.21840 0.94832 1.01305 1.01667 1.21073 0.95011 0.96108 0.97487 1.21682 1.00843 0.95578 1.00677 1.18047 0.94363 0.85566 0.96628 0.94080 1.20816 0.89802 1.35021 1.07214 0.95006 1.25750 0.95487 0.96645 0.99159 1.70036 1.10337 1.45059 1.32771 0.86424 0.80435 0.79740 0.80372 1.17793 1.21537 1.15913 1.21969 0.94253 0.96677 0.87528 1.21215 1.18187 0.94776 0.99130 1.24230 0.98975 0.98546 0.92659 1.77050 1.25965 0.99630 1.12371 1.48225 1.52495 1.08028 1.05622 1.22346 1.00876 0.98367 0.77678 1.23243 0.95544 0.97918 0.99700 1.22808 0.93548 0.96567 1.02736 1.23314 0.97605 0.98716 0.99220 0.93596 0.91104 0.93323 0.92039 0.94195 0.93989 0.91376 0.92548 0.83844 0.77448 0.89153 0.86241 0.90989 0.90202 0.88826 0.93660 0.87649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.35 8.98 71.98 0.65 -3.71 16 2 C -0.08 -2.94 2.19 -10.79 -0.02 -2.97 16 3 C -0.13 -4.84 8.76 71.98 0.63 -4.21 16 4 C 0.07 3.32 1.50 -12.28 -0.02 3.30 16 5 H 0.04 1.83 3.60 -2.39 -0.01 1.82 16 6 C -0.49 -26.66 7.51 25.60 0.19 -26.47 16 7 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 8 C 0.03 1.53 5.47 84.66 0.46 2.00 16 9 N -0.94 -57.15 13.96 21.45 0.30 -56.85 16 10 Si 0.91 40.81 25.51 68.60 1.75 42.56 16 11 H -0.25 -10.53 6.53 99.48 0.65 -9.88 16 12 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 13 H -0.24 -9.68 5.63 99.48 0.56 -9.12 16 14 C 0.12 5.31 4.96 41.41 0.21 5.52 16 15 C -0.30 -11.91 9.35 21.99 0.21 -11.70 16 16 C 0.04 1.45 12.03 85.24 1.03 2.47 16 17 N -0.33 -12.70 10.91 -57.02 -0.62 -13.32 16 18 N -0.36 -14.82 3.68 -311.82 -1.15 -15.97 16 19 C 0.11 4.05 4.71 45.52 0.21 4.26 16 20 C -0.13 -3.48 7.72 31.18 0.24 -3.24 16 21 C -0.12 -3.31 7.70 31.18 0.24 -3.07 16 22 C -0.15 -5.11 7.88 31.12 0.25 -4.87 16 23 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.05 1.56 6.86 -2.39 -0.02 1.54 16 26 H 0.06 2.37 7.08 -2.39 -0.02 2.36 16 27 H 0.04 1.48 6.85 -2.38 -0.02 1.46 16 28 H 0.04 1.77 7.35 -2.39 -0.02 1.76 16 29 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 31 H 0.14 5.25 7.27 -2.91 -0.02 5.23 16 32 H 0.21 5.38 8.06 -2.91 -0.02 5.36 16 33 H 0.09 3.49 4.76 -2.38 -0.01 3.48 16 34 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.08 2.49 7.07 -2.39 -0.02 2.47 16 37 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -64.52 302.47 5.36 -59.16 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 0.82 Total: 27.11 kcal Atomic # 6 Polarization: -46.95 SS G_CDS: 4.27 Total: -42.69 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -1.47 Total: -86.15 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.75 Total: 42.56 kcal Total: -64.52 5.36 -59.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259730400.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.262 kcal (2) G-P(sol) polarization free energy of solvation -64.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds