Wall clock time and date at job start Mon Mar 30 2020 06:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47219 * 2 1 4 4 C 1.53000 * 109.46791 * 120.00052 * 2 1 3 5 5 C 1.50706 * 109.47041 * 174.99886 * 4 2 1 6 6 N 1.30407 * 125.64600 * 89.97347 * 5 4 2 7 7 C 1.34492 * 109.30071 * 180.02562 * 6 5 4 8 8 C 1.34610 * 107.82910 * 0.08915 * 7 6 5 9 9 N 1.34989 * 125.64706 * 270.00064 * 5 4 2 10 10 C 1.46501 * 126.42080 * 359.97438 * 9 5 4 11 11 C 1.51182 * 110.42513 * 180.09274 * 8 7 6 12 12 H 1.09002 * 110.34750 * 257.77838 * 11 8 7 13 13 C 1.50706 * 110.34867 * 135.61917 * 11 8 7 14 14 H 1.08005 * 119.99758 * 1.48526 * 13 11 8 15 15 C 1.37871 * 120.00102 * 181.48411 * 13 11 8 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47057 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 300.00068 * 17 15 13 20 20 H 1.48504 * 109.47102 * 60.00417 * 17 15 13 21 21 C 1.54486 * 105.03346 * 16.70066 * 11 8 7 22 22 C 1.51370 * 141.86416 * 179.97438 * 7 6 5 23 23 H 1.09002 * 109.47386 * 299.99809 * 1 2 3 24 24 H 1.08999 * 109.47397 * 59.99782 * 1 2 3 25 25 H 1.08998 * 109.47413 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46915 * 239.99598 * 2 1 3 27 27 H 1.08996 * 109.47061 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47114 * 300.00391 * 3 2 1 29 29 H 1.09010 * 109.46804 * 60.00171 * 3 2 1 30 30 H 1.09004 * 109.47511 * 55.00134 * 4 2 1 31 31 H 1.08995 * 109.47230 * 294.99965 * 4 2 1 32 32 H 1.08996 * 109.47838 * 89.97155 * 10 9 5 33 33 H 1.09007 * 109.47037 * 209.97570 * 10 9 5 34 34 H 1.09004 * 109.46633 * 329.96902 * 10 9 5 35 35 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 36 36 H 1.09003 * 110.94310 * 92.67243 * 21 11 8 37 37 H 1.08996 * 110.94259 * 216.37172 * 21 11 8 38 38 H 1.09005 * 110.33578 * 44.26491 * 22 7 6 39 39 H 1.09000 * 110.33774 * 282.02616 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5419 -0.8295 1.1889 6 7 4.3864 0.0458 1.6593 7 6 5.6415 -0.3787 1.4283 8 6 5.5656 -1.5608 0.7889 9 7 4.2358 -1.8483 0.6387 10 6 3.6717 -3.0389 -0.0021 11 6 6.9504 -2.0948 0.5012 12 1 7.2114 -1.9279 -0.5439 13 6 7.0246 -3.5636 0.8305 14 1 6.1479 -4.0810 1.1915 15 6 8.2114 -4.2468 0.6710 16 7 9.2790 -3.6167 0.2319 17 14 8.3034 -6.0672 1.0799 18 1 9.6795 -6.5631 0.8236 19 1 7.9616 -6.2711 2.5105 20 1 7.3422 -6.8146 0.2298 21 6 7.8906 -1.2891 1.4250 22 6 7.0884 0.0138 1.6369 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.6053 -1.7199 1.2952 31 1 1.7516 -0.1584 2.1369 32 1 3.5297 -2.8465 -1.0655 33 1 4.3542 -3.8789 0.1273 34 1 2.7114 -3.2771 0.4555 35 1 9.2313 -2.6713 0.0199 36 1 8.0470 -1.8086 2.3704 37 1 8.8410 -1.0857 0.9318 38 1 7.2368 0.3897 2.6492 39 1 7.3863 0.7652 0.9055 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259744331.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:50 Heat of formation + Delta-G solvation = 41.856049 kcal Electronic energy + Delta-G solvation = -18572.755205 eV Core-core repulsion = 15901.578873 eV Total energy + Delta-G solvation = -2671.176333 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.64486 -36.79714 -35.52374 -33.51128 -32.05630 -29.04992 -27.58921 -27.08539 -26.28512 -25.03356 -23.46751 -20.74251 -19.69268 -19.29733 -18.84155 -16.96546 -15.75325 -15.31046 -15.09202 -14.19036 -13.91365 -13.81112 -13.68826 -13.08006 -12.63654 -12.44745 -12.24163 -12.23937 -11.97601 -11.88768 -11.61349 -11.19068 -11.08392 -10.88504 -10.81920 -10.66587 -10.65121 -10.29488 -10.14545 -9.90391 -9.01916 -8.81657 -8.60374 -8.41836 -7.14348 -6.40563 -4.16284 2.81383 3.36474 3.37533 3.39599 3.57691 3.77653 4.46122 4.58644 4.88611 4.95761 5.03547 5.20764 5.28532 5.38135 5.51115 5.56423 5.61929 5.67468 5.75801 5.86493 5.90130 5.93069 5.97813 6.10908 6.12048 6.20831 6.33759 6.41007 6.50080 6.65631 6.85181 6.90928 7.10548 7.24047 7.46414 7.55501 8.00317 8.08874 8.30382 8.77017 8.85507 9.54690 10.95325 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.030950 B = 0.006279 C = 0.005478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.455254 B = 4458.447272 C = 5110.380331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.143 4.143 4 C -0.020 4.020 5 C 0.177 3.823 6 N -0.473 5.473 7 C -0.059 4.059 8 C 0.014 3.986 9 N -0.438 5.438 10 C 0.073 3.927 11 C 0.109 3.891 12 H 0.034 0.966 13 C -0.596 4.596 14 H 0.047 0.953 15 C 0.024 3.976 16 N -0.907 5.907 17 Si 1.066 2.934 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.289 1.289 21 C -0.103 4.103 22 C -0.028 4.028 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.273 0.727 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.253 4.164 -0.850 13.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.201 4.201 4 C -0.059 4.059 5 C -0.083 4.083 6 N -0.192 5.192 7 C -0.186 4.186 8 C -0.102 4.102 9 N -0.121 5.121 10 C -0.070 4.070 11 C 0.089 3.911 12 H 0.052 0.948 13 C -0.634 4.634 14 H 0.065 0.935 15 C -0.181 4.181 16 N -0.543 5.543 17 Si 0.894 3.106 18 H -0.206 1.206 19 H -0.215 1.215 20 H -0.216 1.216 21 C -0.142 4.142 22 C -0.066 4.066 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.506 3.469 -0.487 12.987 hybrid contribution -0.985 0.436 -0.449 1.167 sum -13.491 3.905 -0.936 14.076 Atomic orbital electron populations 1.21834 0.95013 1.01540 1.01854 1.21070 0.95187 0.97207 0.97538 1.21803 1.02523 0.94916 1.00833 1.19942 0.85549 1.00963 0.99411 1.22757 0.95228 0.86934 1.03375 1.69449 0.99287 1.28169 1.22341 1.21421 0.93367 0.96478 1.07374 1.22389 0.86233 0.98374 1.03245 1.44309 1.05501 1.17715 1.44542 1.21994 0.99839 0.87737 0.97446 1.18079 0.82084 0.95717 0.95170 0.94822 1.21853 0.98925 0.93250 1.49410 0.93503 1.25753 0.92108 1.06119 0.94086 1.70807 1.30199 1.12727 1.40564 0.83583 0.76182 0.74530 0.76318 1.20611 1.21457 1.21568 1.22567 0.97406 0.93348 1.00881 1.20409 0.87209 0.98507 1.00507 0.92499 0.92658 0.92820 0.91638 0.91553 0.93523 0.92681 0.91030 0.89361 0.91555 0.88472 0.90767 0.91500 0.91285 0.91444 0.92297 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.19 37.16 0.34 -1.00 16 2 C -0.09 -1.10 2.91 -90.62 -0.26 -1.36 16 3 C -0.14 -1.88 9.00 37.15 0.33 -1.54 16 4 C -0.02 -0.27 5.00 -27.88 -0.14 -0.41 16 5 C 0.18 3.34 6.38 -155.54 -0.99 2.35 16 6 N -0.47 -10.21 10.54 -6.83 -0.07 -10.28 16 7 C -0.06 -1.35 7.98 -82.38 -0.66 -2.01 16 8 C 0.01 0.33 6.91 -81.39 -0.56 -0.24 16 9 N -0.44 -8.81 3.15 -116.54 -0.37 -9.18 16 10 C 0.07 1.17 10.97 59.85 0.66 1.83 16 11 C 0.11 2.73 2.44 -91.90 -0.22 2.50 16 12 H 0.03 0.90 8.00 -51.93 -0.42 0.48 16 13 C -0.60 -16.05 8.25 -34.44 -0.28 -16.34 16 14 H 0.05 1.27 6.70 -52.48 -0.35 0.92 16 15 C 0.02 0.67 5.33 -17.82 -0.10 0.57 16 16 N -0.91 -25.96 13.43 55.43 0.74 -25.22 16 17 Si 1.07 24.23 29.90 -169.99 -5.08 19.15 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 21 C -0.10 -2.37 5.62 -25.18 -0.14 -2.51 16 22 C -0.03 -0.58 6.79 -26.79 -0.18 -0.76 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.08 6.82 -51.93 -0.35 0.72 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 30 H 0.07 0.85 7.07 -51.93 -0.37 0.48 16 31 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.10 1.73 6.85 -51.93 -0.36 1.37 16 34 H 0.07 0.94 7.05 -51.93 -0.37 0.57 16 35 H 0.27 7.67 5.51 -40.82 -0.23 7.45 16 36 H 0.07 1.69 7.91 -51.93 -0.41 1.28 16 37 H 0.07 1.51 6.89 -51.93 -0.36 1.16 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 309.31 15.07 4.66 4.66 Total: -1.00 -30.94 309.31 -8.55 -39.49 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -6.23 Total: 0.29 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -2.21 Total: -18.91 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.31 Total: -44.68 kcal Atomic # 14 Polarization: 24.23 SS G_CDS: -5.08 Total: 19.15 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.94 -8.55 -39.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259744331.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.346 kcal (2) G-P(sol) polarization free energy of solvation -30.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds