Wall clock time and date at job start Mon Mar 30 2020 06:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46851 * 2 1 4 4 C 1.53005 * 109.46909 * 119.99201 * 2 1 3 5 5 C 1.50700 * 109.47031 * 175.00195 * 4 2 1 6 6 N 1.30405 * 125.64401 * 89.97825 * 5 4 2 7 7 C 1.34499 * 109.30167 * 180.02562 * 6 5 4 8 8 C 1.34437 * 107.85670 * 0.02562 * 7 6 5 9 9 N 1.34990 * 125.64840 * 270.02050 * 5 4 2 10 10 C 1.46497 * 126.42015 * 359.97438 * 9 5 4 11 11 C 1.51181 * 110.52755 * 179.97438 * 8 7 6 12 12 H 1.09008 * 110.34152 * 102.13036 * 11 8 7 13 13 C 1.50695 * 110.34514 * 224.29608 * 11 8 7 14 14 H 1.07995 * 120.00496 * 0.02562 * 13 11 8 15 15 C 1.37880 * 119.99572 * 180.02562 * 13 11 8 16 16 N 1.31511 * 120.00327 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 119.99951 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47297 * 59.99744 * 17 15 13 19 19 H 1.48503 * 109.47261 * 299.99924 * 17 15 13 20 20 H 1.48500 * 109.47454 * 179.97438 * 17 15 13 21 21 C 1.54484 * 104.94013 * 343.16643 * 11 8 7 22 22 C 1.51369 * 141.86456 * 180.02562 * 7 6 5 23 23 H 1.08996 * 109.47791 * 300.00436 * 1 2 3 24 24 H 1.09002 * 109.46967 * 60.01187 * 1 2 3 25 25 H 1.09007 * 109.46965 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47304 * 239.99415 * 2 1 3 27 27 H 1.09012 * 109.46546 * 299.99215 * 3 2 1 28 28 H 1.08996 * 109.47279 * 59.99250 * 3 2 1 29 29 H 1.08996 * 109.46749 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46504 * 55.00304 * 4 2 1 31 31 H 1.09000 * 109.47135 * 295.00371 * 4 2 1 32 32 H 1.09000 * 109.47397 * 269.96454 * 10 9 5 33 33 H 1.09004 * 109.47165 * 29.95454 * 10 9 5 34 34 H 1.08999 * 109.47306 * 149.96026 * 10 9 5 35 35 H 0.97006 * 119.99995 * 359.97438 * 16 15 13 36 36 H 1.08996 * 110.94953 * 143.68129 * 21 11 8 37 37 H 1.09005 * 110.94141 * 267.38136 * 21 11 8 38 38 H 1.08994 * 110.33995 * 315.74587 * 22 7 6 39 39 H 1.09006 * 110.33063 * 77.88043 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5419 -0.8292 1.1891 6 7 4.3863 0.0462 1.6594 7 6 5.6415 -0.3783 1.4285 8 6 5.5665 -1.5596 0.7912 9 7 4.2359 -1.8479 0.6386 10 6 3.6719 -3.0383 -0.0023 11 6 6.9505 -2.0938 0.5002 12 1 7.2129 -2.8752 1.2135 13 6 7.0215 -2.6255 -0.9080 14 1 6.1502 -2.5856 -1.5449 15 6 8.1989 -3.1629 -1.3834 16 7 9.2598 -3.2119 -0.6078 17 14 8.2872 -3.8214 -3.1293 18 1 7.9792 -2.7287 -4.0867 19 1 7.2995 -4.9179 -3.2953 20 1 9.6530 -4.3405 -3.3941 21 6 7.8892 -0.8776 0.6632 22 6 7.0884 0.0140 1.6378 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.6766 1.9563 -0.8902 28 1 1.6765 1.9564 0.8899 29 1 3.1299 1.4425 -0.0005 30 1 1.6053 -1.7197 1.2953 31 1 1.7515 -0.1581 2.1370 32 1 3.5341 -3.8216 0.7431 33 1 2.7094 -2.7889 -0.4492 34 1 4.3522 -3.3903 -0.7778 35 1 9.2141 -2.8696 0.2987 36 1 8.8414 -1.1763 1.1015 37 1 8.0422 -0.3729 -0.2908 38 1 7.2345 1.0665 1.3950 39 1 7.3888 -0.1819 2.6672 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259744333.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:52 Heat of formation + Delta-G solvation = 41.308428 kcal Electronic energy + Delta-G solvation = -18620.177348 eV Core-core repulsion = 15948.977269 eV Total energy + Delta-G solvation = -2671.200079 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.64476 -36.78904 -35.50684 -33.50522 -32.06450 -29.03640 -27.58908 -27.05569 -26.27986 -25.03497 -23.45944 -20.73374 -19.68243 -19.29130 -18.84648 -16.95284 -15.88337 -15.12431 -15.04810 -14.23406 -13.88741 -13.85120 -13.69647 -13.00827 -12.66347 -12.43806 -12.26387 -12.20643 -12.02856 -11.84841 -11.58619 -11.15646 -11.02183 -10.93543 -10.78682 -10.70580 -10.61584 -10.30931 -10.14651 -9.89968 -9.01730 -8.81810 -8.59986 -8.42283 -7.14919 -6.41011 -4.16325 2.80855 3.36557 3.38001 3.39510 3.57432 3.77474 4.45928 4.59725 4.90177 4.97480 5.04347 5.22075 5.29736 5.38318 5.53507 5.56781 5.63276 5.69461 5.76285 5.88777 5.92206 5.92558 5.98705 6.10471 6.14910 6.20998 6.36786 6.41160 6.54243 6.65464 6.84961 6.91122 7.10258 7.23851 7.46192 7.55366 8.00434 8.09017 8.30555 8.76827 8.85416 9.54575 10.95143 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.025403 B = 0.006732 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.947360 B = 4158.541908 C = 4771.830068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.143 4.143 4 C -0.019 4.019 5 C 0.178 3.822 6 N -0.473 5.473 7 C -0.059 4.059 8 C 0.014 3.986 9 N -0.439 5.439 10 C 0.073 3.927 11 C 0.109 3.891 12 H 0.035 0.965 13 C -0.596 4.596 14 H 0.047 0.953 15 C 0.024 3.976 16 N -0.907 5.907 17 Si 1.065 2.935 18 H -0.288 1.288 19 H -0.289 1.289 20 H -0.281 1.281 21 C -0.103 4.103 22 C -0.028 4.028 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.273 0.727 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.221 3.030 1.410 13.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.201 4.201 4 C -0.058 4.058 5 C -0.082 4.082 6 N -0.193 5.193 7 C -0.186 4.186 8 C -0.102 4.102 9 N -0.122 5.122 10 C -0.070 4.070 11 C 0.089 3.911 12 H 0.053 0.947 13 C -0.634 4.634 14 H 0.065 0.935 15 C -0.181 4.181 16 N -0.543 5.543 17 Si 0.894 3.106 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.206 1.206 21 C -0.142 4.142 22 C -0.066 4.066 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.482 2.918 0.649 12.835 hybrid contribution -0.971 -0.123 0.629 1.163 sum -13.453 2.795 1.278 13.800 Atomic orbital electron populations 1.21835 0.95015 1.01504 1.01860 1.21089 0.95167 0.97312 0.97558 1.21800 1.02609 0.94850 1.00797 1.19939 0.85524 1.00941 0.99434 1.22764 0.95235 0.86834 1.03379 1.69453 0.99282 1.27863 1.22686 1.21371 0.93374 0.96744 1.07130 1.22378 0.86230 0.99379 1.02189 1.44350 1.05505 1.17900 1.44444 1.21993 0.99843 0.86252 0.98947 1.18083 0.82110 0.93150 0.97753 0.94738 1.21843 0.99744 1.44341 0.97457 0.93503 1.25753 0.92145 0.94868 1.05311 1.70803 1.30352 1.43610 1.09489 0.83588 0.76186 0.76300 0.74574 1.21458 1.21562 1.20605 1.22563 0.97432 0.96208 0.97991 1.20409 0.87223 0.99553 0.99451 0.92527 0.92623 0.92850 0.91553 0.93495 0.92733 0.91486 0.91054 0.89368 0.91561 0.90763 0.88444 0.91548 0.91492 0.91303 0.92326 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.19 37.16 0.34 -1.03 16 2 C -0.09 -1.15 2.91 -90.62 -0.26 -1.41 16 3 C -0.14 -1.95 9.00 37.16 0.33 -1.62 16 4 C -0.02 -0.27 4.78 -27.88 -0.13 -0.40 16 5 C 0.18 3.36 6.38 -155.54 -0.99 2.37 16 6 N -0.47 -10.21 10.54 -6.87 -0.07 -10.28 16 7 C -0.06 -1.35 7.98 -82.44 -0.66 -2.01 16 8 C 0.01 0.34 6.90 -81.39 -0.56 -0.22 16 9 N -0.44 -8.84 3.15 -116.56 -0.37 -9.21 16 10 C 0.07 1.17 10.79 59.85 0.65 1.81 16 11 C 0.11 2.72 2.42 -91.91 -0.22 2.49 16 12 H 0.03 0.92 7.94 -51.92 -0.41 0.51 16 13 C -0.60 -16.01 8.21 -34.44 -0.28 -16.30 16 14 H 0.05 1.27 6.77 -52.49 -0.36 0.91 16 15 C 0.02 0.66 5.34 -17.82 -0.10 0.57 16 16 N -0.91 -25.95 13.45 55.43 0.75 -25.21 16 17 Si 1.07 24.24 29.90 -169.99 -5.08 19.16 16 18 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.26 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 C -0.10 -2.36 5.70 -25.18 -0.14 -2.50 16 22 C -0.03 -0.58 6.79 -26.78 -0.18 -0.76 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.14 6.82 -51.93 -0.35 0.79 16 30 H 0.07 0.84 7.70 -51.93 -0.40 0.44 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.95 7.66 -51.93 -0.40 0.55 16 34 H 0.10 1.74 6.89 -51.93 -0.36 1.38 16 35 H 0.27 7.67 5.61 -40.82 -0.23 7.44 16 36 H 0.07 1.50 6.98 -51.93 -0.36 1.14 16 37 H 0.07 1.67 7.91 -51.93 -0.41 1.26 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 310.45 15.07 4.68 4.68 Total: -1.00 -30.88 310.45 -8.61 -39.49 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -6.30 Total: 0.37 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -2.21 Total: -19.00 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.31 Total: -44.69 kcal Atomic # 14 Polarization: 24.24 SS G_CDS: -5.08 Total: 19.16 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.88 -8.61 -39.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259744333.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.800 kcal (2) G-P(sol) polarization free energy of solvation -30.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds