Wall clock time and date at job start Mon Mar 30 2020 06:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46851 * 2 1 4 4 C 1.53005 * 109.46909 * 119.99201 * 2 1 3 5 5 C 1.50700 * 109.47031 * 175.00195 * 4 2 1 6 6 N 1.30405 * 125.64401 * 89.97825 * 5 4 2 7 7 C 1.34499 * 109.30167 * 180.02562 * 6 5 4 8 8 C 1.34437 * 107.85670 * 0.02562 * 7 6 5 9 9 N 1.34990 * 125.64840 * 270.02050 * 5 4 2 10 10 C 1.46497 * 126.42015 * 359.97438 * 9 5 4 11 11 C 1.51181 * 110.52755 * 179.97438 * 8 7 6 12 12 H 1.09008 * 110.34152 * 102.13036 * 11 8 7 13 13 C 1.50695 * 110.34514 * 224.29608 * 11 8 7 14 14 H 1.07995 * 120.00496 * 0.02562 * 13 11 8 15 15 C 1.37880 * 119.99572 * 180.02562 * 13 11 8 16 16 N 1.31511 * 120.00327 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 119.99951 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47297 * 59.99744 * 17 15 13 19 19 H 1.48503 * 109.47261 * 299.99924 * 17 15 13 20 20 H 1.48500 * 109.47454 * 179.97438 * 17 15 13 21 21 C 1.54484 * 104.94013 * 343.16643 * 11 8 7 22 22 C 1.51369 * 141.86456 * 180.02562 * 7 6 5 23 23 H 1.08996 * 109.47791 * 300.00436 * 1 2 3 24 24 H 1.09002 * 109.46967 * 60.01187 * 1 2 3 25 25 H 1.09007 * 109.46965 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47304 * 239.99415 * 2 1 3 27 27 H 1.09012 * 109.46546 * 299.99215 * 3 2 1 28 28 H 1.08996 * 109.47279 * 59.99250 * 3 2 1 29 29 H 1.08996 * 109.46749 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46504 * 55.00304 * 4 2 1 31 31 H 1.09000 * 109.47135 * 295.00371 * 4 2 1 32 32 H 1.09000 * 109.47397 * 269.96454 * 10 9 5 33 33 H 1.09004 * 109.47165 * 29.95454 * 10 9 5 34 34 H 1.08999 * 109.47306 * 149.96026 * 10 9 5 35 35 H 0.97006 * 119.99995 * 359.97438 * 16 15 13 36 36 H 1.08996 * 110.94953 * 143.68129 * 21 11 8 37 37 H 1.09005 * 110.94141 * 267.38136 * 21 11 8 38 38 H 1.08994 * 110.33995 * 315.74587 * 22 7 6 39 39 H 1.09006 * 110.33063 * 77.88043 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5419 -0.8292 1.1891 6 7 4.3863 0.0462 1.6594 7 6 5.6415 -0.3783 1.4285 8 6 5.5665 -1.5596 0.7912 9 7 4.2359 -1.8479 0.6386 10 6 3.6719 -3.0383 -0.0023 11 6 6.9505 -2.0938 0.5002 12 1 7.2129 -2.8752 1.2135 13 6 7.0215 -2.6255 -0.9080 14 1 6.1502 -2.5856 -1.5449 15 6 8.1989 -3.1629 -1.3834 16 7 9.2598 -3.2119 -0.6078 17 14 8.2872 -3.8214 -3.1293 18 1 7.9792 -2.7287 -4.0867 19 1 7.2995 -4.9179 -3.2953 20 1 9.6530 -4.3405 -3.3941 21 6 7.8892 -0.8776 0.6632 22 6 7.0884 0.0140 1.6378 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.6766 1.9563 -0.8902 28 1 1.6765 1.9564 0.8899 29 1 3.1299 1.4425 -0.0005 30 1 1.6053 -1.7197 1.2953 31 1 1.7515 -0.1581 2.1370 32 1 3.5341 -3.8216 0.7431 33 1 2.7094 -2.7889 -0.4492 34 1 4.3522 -3.3903 -0.7778 35 1 9.2141 -2.8696 0.2987 36 1 8.8414 -1.1763 1.1015 37 1 8.0422 -0.3729 -0.2908 38 1 7.2345 1.0665 1.3950 39 1 7.3888 -0.1819 2.6672 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259744333.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:52 Heat of formation + Delta-G solvation = 25.005838 kcal Electronic energy + Delta-G solvation = -18620.884282 eV Core-core repulsion = 15948.977269 eV Total energy + Delta-G solvation = -2671.907013 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.24481 -38.29262 -36.85906 -35.17012 -33.92971 -30.34594 -29.37442 -28.01762 -27.81013 -26.54407 -25.44443 -22.10925 -21.13700 -20.93247 -20.36418 -18.91176 -17.49429 -16.64336 -16.14451 -15.88495 -15.69060 -15.16898 -14.86099 -14.68640 -14.24467 -13.83401 -13.65300 -13.49960 -13.42421 -13.05732 -12.94872 -12.81993 -12.60166 -12.48448 -12.21141 -12.06697 -11.94575 -11.77522 -11.67213 -11.58690 -10.84872 -10.60007 -10.45843 -10.27460 -8.89400 -8.54385 -6.34115 1.19800 1.52335 1.58827 1.78292 1.88814 2.13524 2.55995 3.14838 3.21377 3.65823 3.91408 3.95184 3.97801 4.03137 4.29774 4.31728 4.34452 4.41578 4.57264 4.63513 4.67405 4.69720 4.83541 4.84384 4.89181 5.00373 5.04155 5.08665 5.20730 5.24853 5.28106 5.42245 5.46517 5.48024 5.63785 5.83263 6.02851 6.15389 6.48656 6.63801 7.22138 7.44360 8.78630 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.025403 B = 0.006732 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.947360 B = 4158.541908 C = 4771.830068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 C -0.142 4.142 4 C -0.020 4.020 5 C 0.199 3.801 6 N -0.501 5.501 7 C -0.072 4.072 8 C -0.027 4.027 9 N -0.445 5.445 10 C 0.068 3.932 11 C 0.106 3.894 12 H 0.007 0.993 13 C -0.602 4.602 14 H 0.040 0.960 15 C -0.021 4.021 16 N -0.931 5.931 17 Si 1.109 2.891 18 H -0.278 1.278 19 H -0.270 1.270 20 H -0.283 1.283 21 C -0.093 4.093 22 C -0.021 4.021 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.026 0.974 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.073 0.927 35 H 0.264 0.736 36 H 0.065 0.935 37 H 0.048 0.952 38 H 0.072 0.928 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.000 2.995 0.988 16.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.107 4.107 3 C -0.199 4.199 4 C -0.059 4.059 5 C -0.062 4.062 6 N -0.220 5.220 7 C -0.199 4.199 8 C -0.143 4.143 9 N -0.127 5.127 10 C -0.074 4.074 11 C 0.087 3.913 12 H 0.025 0.975 13 C -0.640 4.640 14 H 0.058 0.942 15 C -0.220 4.220 16 N -0.567 5.567 17 Si 0.932 3.068 18 H -0.203 1.203 19 H -0.195 1.195 20 H -0.208 1.208 21 C -0.132 4.132 22 C -0.060 4.060 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.045 0.955 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.103 0.897 33 H 0.131 0.869 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.276 2.875 0.235 15.546 hybrid contribution -0.206 -0.082 0.795 0.826 sum -15.482 2.793 1.030 15.765 Atomic orbital electron populations 1.21773 0.92016 1.02891 1.02759 1.21059 0.97475 0.95888 0.96238 1.21781 0.99929 0.96314 1.01900 1.20261 0.81796 1.03166 1.00638 1.23838 0.97123 0.85147 1.00136 1.69499 0.98949 1.29063 1.24512 1.21724 0.94462 0.96782 1.06929 1.22171 0.87117 1.00259 1.04752 1.44633 1.04486 1.19151 1.44472 1.22222 1.00707 0.85562 0.98880 1.17929 0.84200 0.93044 0.96138 0.97501 1.22072 0.99475 1.44100 0.98308 0.94183 1.27066 0.91812 0.94797 1.08361 1.70900 1.31170 1.45126 1.09541 0.83018 0.76493 0.76630 0.70690 1.20328 1.19482 1.20794 1.22343 0.97399 0.95840 0.97636 1.20356 0.86282 0.99697 0.99623 0.91553 0.91884 0.91246 0.92622 0.92215 0.91907 0.95480 0.88076 0.88276 0.89662 0.86892 0.90771 0.92481 0.91647 0.93284 0.90901 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.19 71.98 0.66 -1.34 16 2 C -0.09 -1.90 2.91 -10.79 -0.03 -1.93 16 3 C -0.14 -3.60 9.00 71.98 0.65 -2.95 16 4 C -0.02 -0.48 4.78 29.85 0.14 -0.34 16 5 C 0.20 7.21 6.38 138.17 0.88 8.10 16 6 N -0.50 -21.36 10.54 -175.64 -1.85 -23.21 16 7 C -0.07 -3.32 7.98 41.49 0.33 -2.99 16 8 C -0.03 -1.27 6.90 41.03 0.28 -0.98 16 9 N -0.45 -17.59 3.15 -522.68 -1.65 -19.24 16 10 C 0.07 2.07 10.79 127.77 1.38 3.45 16 11 C 0.11 5.53 2.42 -11.63 -0.03 5.50 16 12 H 0.01 0.40 7.94 -2.38 -0.02 0.38 16 13 C -0.60 -33.21 8.21 25.60 0.21 -33.00 16 14 H 0.04 2.21 6.77 -2.91 -0.02 2.19 16 15 C -0.02 -1.15 5.34 84.66 0.45 -0.70 16 16 N -0.93 -54.62 13.45 21.45 0.29 -54.33 16 17 Si 1.11 48.91 29.90 68.60 2.05 50.97 16 18 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 21 C -0.09 -4.44 5.70 31.60 0.18 -4.26 16 22 C -0.02 -0.89 6.79 30.56 0.21 -0.68 16 23 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.03 0.89 6.82 -2.39 -0.02 0.87 16 30 H 0.10 1.89 7.70 -2.38 -0.02 1.87 16 31 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.11 2.51 7.66 -2.39 -0.02 2.49 16 34 H 0.07 2.62 6.89 -2.39 -0.02 2.61 16 35 H 0.26 15.48 5.61 -92.70 -0.52 14.96 16 36 H 0.06 3.07 6.98 -2.39 -0.02 3.05 16 37 H 0.05 2.48 7.91 -2.38 -0.02 2.46 16 38 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 39 H 0.08 3.03 8.14 -2.38 -0.02 3.01 16 Total: -1.00 -68.60 310.45 5.42 -63.18 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 1.26 Total: 14.75 kcal Atomic # 6 Polarization: -37.44 SS G_CDS: 5.32 Total: -32.12 kcal Atomic # 7 Polarization: -93.56 SS G_CDS: -3.21 Total: -96.77 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 2.05 Total: 50.97 kcal Total: -68.60 5.42 -63.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259744333.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.188 kcal (2) G-P(sol) polarization free energy of solvation -68.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds