Wall clock time and date at job start Mon Mar 30 2020 05:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30839 * 125.89706 * 2 1 4 4 N 1.40090 * 108.20528 * 179.97438 * 3 2 1 5 5 C 1.46492 * 126.03879 * 180.02562 * 4 3 2 6 6 C 1.54267 * 110.03198 * 212.14473 * 5 4 3 7 7 C 1.54897 * 104.19378 * 217.10377 * 6 5 4 8 8 C 1.54889 * 102.74892 * 37.93977 * 7 6 5 9 9 C 1.53869 * 110.03443 * 94.97415 * 5 4 3 10 10 C 1.34950 * 107.92441 * 359.75752 * 4 3 2 11 11 C 1.35316 * 107.74572 * 0.39188 * 10 4 3 12 12 C 1.50701 * 126.04122 * 179.87398 * 11 10 4 13 13 C 1.52997 * 109.47212 * 264.68788 * 12 11 10 14 14 C 1.50697 * 109.47466 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46838 * 89.99826 * 18 16 14 20 20 H 1.48497 * 109.47419 * 209.99978 * 18 16 14 21 21 H 1.48499 * 109.47011 * 330.00539 * 18 16 14 22 22 H 1.09002 * 109.47352 * 270.02094 * 1 2 3 23 23 H 1.08998 * 109.47537 * 30.02706 * 1 2 3 24 24 H 1.09004 * 109.46972 * 150.02073 * 1 2 3 25 25 H 1.09002 * 110.01796 * 333.58107 * 5 4 3 26 26 H 1.08997 * 110.48764 * 335.77619 * 6 5 4 27 27 H 1.08997 * 110.48711 * 98.42853 * 6 5 4 28 28 H 1.09005 * 110.75394 * 279.62844 * 7 6 5 29 29 H 1.08997 * 110.75496 * 156.25808 * 7 6 5 30 30 H 1.09001 * 110.48858 * 203.37984 * 8 7 6 31 31 H 1.09008 * 110.59816 * 80.78991 * 8 7 6 32 32 H 1.09002 * 110.03251 * 238.57216 * 9 5 4 33 33 H 1.09003 * 110.03335 * 0.02562 * 9 5 4 34 34 H 1.07999 * 126.12772 * 180.23855 * 10 4 3 35 35 H 1.09002 * 109.47060 * 24.68843 * 12 11 10 36 36 H 1.09001 * 109.47380 * 144.68931 * 12 11 10 37 37 H 1.09002 * 109.47153 * 299.99998 * 13 12 11 38 38 H 1.08998 * 109.47533 * 59.99628 * 13 12 11 39 39 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 6 4.7898 1.5008 0.0013 6 6 5.9422 0.8241 -0.7693 7 6 7.2123 1.2145 0.0268 8 6 6.7262 1.1553 1.4963 9 6 5.2882 1.7113 1.4417 10 6 3.6142 -0.7153 0.0064 11 6 2.3271 -1.1330 0.0006 12 6 1.8599 -2.5658 0.0012 13 6 1.5823 -3.0124 -1.4356 14 6 1.1157 -4.4453 -1.4350 15 1 1.0257 -4.9835 -0.5030 16 6 0.8027 -5.0689 -2.6242 17 7 0.9119 -4.4133 -3.7591 18 14 0.2250 -6.8453 -2.6236 19 1 -1.2545 -6.8846 -2.5005 20 1 0.6336 -7.4992 -3.8926 21 1 0.8362 -7.5642 -1.4769 22 1 -0.3634 0.0004 1.0277 23 1 -0.3634 0.8897 -0.5142 24 1 -0.3633 -0.8902 -0.5135 25 1 4.5483 2.4611 -0.4543 26 1 5.8134 -0.2582 -0.7753 27 1 5.9974 1.2084 -1.7879 28 1 7.5362 2.2224 -0.2326 29 1 8.0123 0.4943 -0.1448 30 1 7.3534 1.7811 2.1311 31 1 6.7241 0.1271 1.8584 32 1 5.2893 2.7739 1.6849 33 1 4.6516 1.1683 2.1403 34 1 4.4891 -1.3485 0.0119 35 1 2.6327 -3.1997 0.4359 36 1 0.9469 -2.6499 0.5906 37 1 0.8095 -2.3784 -1.8702 38 1 2.4953 -2.9282 -2.0251 39 1 0.6913 -4.8519 -4.5957 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259751431.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:42 Heat of formation + Delta-G solvation = 28.152116 kcal Electronic energy + Delta-G solvation = -17878.279653 eV Core-core repulsion = 15206.509073 eV Total energy + Delta-G solvation = -2671.770580 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.29534 -38.98100 -35.95367 -34.19875 -33.22064 -30.64026 -29.99884 -29.64850 -27.52773 -26.23528 -23.42221 -22.00381 -21.63952 -20.60342 -20.23059 -18.50160 -17.79981 -16.81391 -16.48143 -15.73196 -15.50864 -15.30213 -14.76650 -14.45115 -14.34175 -13.92832 -13.81673 -13.63331 -13.07428 -12.98188 -12.84939 -12.78825 -12.52972 -12.34926 -12.12013 -12.04672 -11.90884 -11.76300 -11.57481 -11.48315 -11.33735 -11.05106 -10.49911 -10.05789 -9.08810 -8.13984 -6.25797 0.96088 1.43144 1.44690 1.55679 1.61929 1.85986 2.45566 3.18582 3.33203 3.54250 3.84608 3.87744 3.92426 4.21712 4.35245 4.37808 4.44155 4.49861 4.53260 4.67092 4.72253 4.80288 4.82250 4.97741 4.98761 5.00658 5.09416 5.16550 5.17637 5.21595 5.25500 5.31287 5.39450 5.57522 5.80670 5.86717 5.93464 6.25139 6.31017 6.83267 6.92263 7.43497 8.97387 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.028484 B = 0.004771 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.784784 B = 5866.938199 C = 6404.088835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.061 3.939 3 N -0.329 5.329 4 N -0.367 5.367 5 C 0.149 3.851 6 C -0.138 4.138 7 C -0.111 4.111 8 C -0.120 4.120 9 C -0.130 4.130 10 C 0.053 3.947 11 C -0.241 4.241 12 C -0.021 4.021 13 C 0.041 3.959 14 C -0.539 4.539 15 H 0.063 0.937 16 C 0.000 4.000 17 N -0.936 5.936 18 Si 0.964 3.036 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.261 1.261 22 H 0.092 0.908 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.100 0.900 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.187 0.813 35 H 0.059 0.941 36 H 0.059 0.941 37 H -0.013 1.013 38 H -0.018 1.018 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.409 11.955 10.129 19.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.104 4.104 3 N -0.152 5.152 4 N -0.149 5.149 5 C 0.048 3.952 6 C -0.177 4.177 7 C -0.149 4.149 8 C -0.157 4.157 9 C -0.169 4.169 10 C -0.093 4.093 11 C -0.252 4.252 12 C -0.060 4.060 13 C 0.003 3.997 14 C -0.577 4.577 15 H 0.082 0.918 16 C -0.198 4.198 17 N -0.576 5.576 18 Si 0.789 3.211 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.185 1.185 22 H 0.110 0.890 23 H 0.094 0.906 24 H 0.087 0.913 25 H 0.118 0.882 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.072 0.928 34 H 0.204 0.796 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.005 0.995 38 H 0.000 1.000 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.555 13.321 9.954 20.250 hybrid contribution -0.552 -1.723 -0.583 1.901 sum 11.003 11.598 9.372 18.531 Atomic orbital electron populations 1.20189 0.85888 1.03101 1.03569 1.22573 0.97891 0.90377 0.99583 1.77079 0.87664 1.23214 1.27264 1.48830 1.04863 1.04494 1.56754 1.22292 0.80962 0.93423 0.98478 1.22872 0.93873 1.01149 0.99806 1.22460 0.95691 1.03096 0.93658 1.22373 0.94171 1.01616 0.97563 1.22581 0.97713 1.02786 0.93805 1.22381 0.99104 0.85524 1.02300 1.20398 0.92722 0.96891 1.15192 1.19774 0.99683 0.89046 0.97466 1.18883 0.94164 0.94420 0.92185 1.21744 1.44194 0.98621 0.93170 0.91842 1.25979 0.95768 1.02838 0.95179 1.70132 1.50184 1.38937 0.98392 0.85461 0.78731 0.79224 0.77709 1.19803 1.20989 1.18507 0.88992 0.90570 0.91334 0.88156 0.91038 0.90153 0.89452 0.89614 0.89238 0.91670 0.89207 0.92833 0.79601 0.92231 0.92254 0.99501 0.99952 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.30 10.21 71.23 0.73 -1.57 16 2 C 0.06 2.36 7.22 43.10 0.31 2.68 16 3 N -0.33 -12.38 12.58 -47.39 -0.60 -12.98 16 4 N -0.37 -11.91 3.45 -324.07 -1.12 -13.03 16 5 C 0.15 3.46 4.01 45.72 0.18 3.65 16 6 C -0.14 -2.65 6.37 31.67 0.20 -2.45 16 7 C -0.11 -1.43 6.91 31.89 0.22 -1.21 16 8 C -0.12 -1.64 6.83 31.67 0.22 -1.43 16 9 C -0.13 -2.43 6.59 31.32 0.21 -2.22 16 10 C 0.05 1.82 10.34 83.54 0.86 2.68 16 11 C -0.24 -9.67 5.35 -20.14 -0.11 -9.77 16 12 C -0.02 -0.92 5.27 29.85 0.16 -0.76 16 13 C 0.04 2.23 4.95 29.85 0.15 2.38 16 14 C -0.54 -31.11 9.11 25.60 0.23 -30.88 16 15 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 16 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 17 N -0.94 -58.24 13.29 21.45 0.28 -57.96 16 18 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 21 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 22 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 23 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.07 2.51 7.70 -2.38 -0.02 2.49 16 25 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.07 1.55 5.95 -2.39 -0.01 1.53 16 27 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 28 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.05 1.24 7.92 -2.39 -0.02 1.22 16 34 H 0.19 5.42 6.89 -2.91 -0.02 5.40 16 35 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.06 2.50 8.09 -2.39 -0.02 2.48 16 37 H -0.01 -0.80 7.88 -2.39 -0.02 -0.82 16 38 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 39 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -70.41 318.84 5.43 -64.98 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 1.00 Total: 10.79 kcal Atomic # 6 Polarization: -42.28 SS G_CDS: 3.82 Total: -38.46 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -1.43 Total: -83.97 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -70.41 5.43 -64.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259751431.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.137 kcal (2) G-P(sol) polarization free energy of solvation -70.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds