Wall clock time and date at job start Mon Mar 30 2020 06:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50692 * 109.47356 * 2 1 4 4 N 1.30794 * 125.72416 * 90.02467 * 3 2 1 5 5 C 1.34420 * 109.32314 * 179.90382 * 4 3 2 6 6 C 1.50696 * 126.10126 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47259 * 90.02555 * 6 5 4 8 8 H 1.08005 * 119.99758 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00102 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00217 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99766 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47483 * 269.99808 * 11 9 7 13 13 H 1.48499 * 109.47134 * 30.00322 * 11 9 7 14 14 H 1.48507 * 109.46904 * 150.00145 * 11 9 7 15 15 C 1.33861 * 107.79848 * 0.22314 * 5 4 3 16 16 N 1.34407 * 125.72663 * 269.98305 * 3 2 1 17 17 C 1.46468 * 128.44108 * 0.22753 * 16 3 2 18 18 C 1.53282 * 108.69242 * 162.68036 * 17 16 3 19 19 C 1.53113 * 109.70466 * 50.76871 * 18 17 16 20 20 H 1.09008 * 109.50065 * 50.06017 * 19 18 17 21 21 C 1.52998 * 109.50349 * 170.13106 * 19 18 17 22 22 C 1.50721 * 128.68252 * 180.50338 * 15 5 4 23 23 H 1.08998 * 109.47135 * 59.99957 * 1 2 3 24 24 H 1.08999 * 109.47358 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47081 * 300.00136 * 1 2 3 26 26 H 1.09002 * 109.47108 * 240.00360 * 2 1 3 27 27 H 1.08998 * 109.47173 * 120.00598 * 2 1 3 28 28 H 1.09001 * 109.47545 * 330.02896 * 6 5 4 29 29 H 1.09006 * 109.47511 * 210.02561 * 6 5 4 30 30 H 0.97001 * 119.99646 * 359.97438 * 10 9 7 31 31 H 1.09006 * 109.59924 * 282.44163 * 17 16 3 32 32 H 1.09001 * 109.60082 * 42.75560 * 17 16 3 33 33 H 1.09004 * 109.43632 * 170.84117 * 18 17 16 34 34 H 1.08999 * 109.43431 * 290.74675 * 18 17 16 35 35 H 1.08997 * 109.47231 * 59.99804 * 21 19 18 36 36 H 1.08995 * 109.47722 * 180.02562 * 21 19 18 37 37 H 1.09005 * 109.46801 * 299.99850 * 21 19 18 38 38 H 1.09007 * 109.87777 * 44.10444 * 22 15 5 39 39 H 1.08996 * 109.55413 * 283.42150 * 22 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2873 2.1406 1.0618 5 6 2.7190 3.3556 0.6823 6 6 3.1182 4.4826 1.5996 7 6 4.5903 4.3834 1.9063 8 1 5.1782 3.5843 1.4793 9 6 5.1867 5.3126 2.7320 10 7 4.4707 6.2853 3.2525 11 14 7.0113 5.1891 3.1127 12 1 7.2088 4.3532 4.3241 13 1 7.7160 4.5682 1.9625 14 1 7.5596 6.5479 3.3542 15 6 2.7260 3.3878 -0.6559 16 7 2.2942 2.1605 -1.0911 17 6 2.1571 1.7852 -2.5003 18 6 2.1520 3.0608 -3.3502 19 6 3.3505 3.9364 -2.9744 20 1 4.2589 3.3339 -2.9853 21 6 3.4838 5.0797 -3.9823 22 6 3.1355 4.5149 -1.5690 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.5487 4.4157 2.5266 29 1 2.9117 5.4367 1.1144 30 1 3.5232 6.3492 3.0551 31 1 2.9957 1.1537 -2.7937 32 1 1.2228 1.2428 -2.6449 33 1 2.2144 2.7940 -4.4052 34 1 1.2297 3.6130 -3.1698 35 1 2.5758 5.6825 -3.9701 36 1 4.3374 5.7024 -3.7146 37 1 3.6335 4.6684 -4.9806 38 1 4.0614 4.9647 -1.2103 39 1 2.3468 5.2667 -1.5969 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259756274.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:04 Heat of formation + Delta-G solvation = 22.379447 kcal Electronic energy + Delta-G solvation = -18527.355700 eV Core-core repulsion = 15855.334798 eV Total energy + Delta-G solvation = -2672.020901 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.77485 -37.06081 -34.47208 -33.07463 -32.64764 -30.04260 -29.34799 -27.29173 -25.40584 -23.62325 -23.30842 -22.16647 -20.40632 -19.41399 -18.47618 -16.72646 -15.84930 -15.51897 -14.61885 -14.37327 -14.18412 -14.00321 -13.64869 -13.36365 -13.14179 -12.85907 -12.51585 -12.29863 -12.09677 -11.76142 -11.56158 -11.32285 -11.22045 -11.04194 -10.76460 -10.68180 -10.58568 -10.49767 -10.22454 -10.00321 -9.04600 -8.96127 -8.46332 -8.21943 -7.22710 -6.22531 -3.90935 2.67343 3.25312 3.50803 3.54725 3.70388 3.96248 4.54230 4.62226 4.66109 4.70698 4.81476 5.07815 5.13122 5.18957 5.27261 5.40167 5.50606 5.55347 5.57185 5.59434 5.70334 5.73932 5.82071 5.85212 5.97170 6.00059 6.12898 6.21356 6.26079 6.40739 6.48524 6.61087 7.07438 7.34944 7.48952 7.72025 7.93795 8.33509 8.60567 8.96550 9.01128 9.78013 11.16173 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018305 B = 0.007518 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.272541 B = 3723.724188 C = 4775.460654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.031 4.031 3 C 0.187 3.813 4 N -0.486 5.486 5 C 0.065 3.935 6 C 0.082 3.918 7 C -0.578 4.578 8 H 0.046 0.954 9 C 0.014 3.986 10 N -0.917 5.917 11 Si 1.071 2.929 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.285 1.285 15 C -0.047 4.047 16 N -0.460 5.460 17 C 0.109 3.891 18 C -0.125 4.125 19 C -0.096 4.096 20 H 0.072 0.928 21 C -0.144 4.144 22 C -0.030 4.030 23 H 0.048 0.952 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.021 0.979 29 H 0.019 0.981 30 H 0.268 0.732 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.092 0.908 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.927 -8.741 -15.834 19.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 C -0.073 4.073 4 N -0.206 5.206 5 C -0.063 4.063 6 C 0.044 3.956 7 C -0.617 4.617 8 H 0.064 0.936 9 C -0.189 4.189 10 N -0.554 5.554 11 Si 0.900 3.100 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.210 1.210 15 C -0.158 4.158 16 N -0.146 5.146 17 C -0.014 4.014 18 C -0.163 4.163 19 C -0.115 4.115 20 H 0.090 0.910 21 C -0.201 4.201 22 C -0.068 4.068 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.109 0.891 28 H 0.039 0.961 29 H 0.037 0.963 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.797 -8.331 -14.332 17.257 hybrid contribution -1.134 -0.660 -1.712 2.157 sum -5.931 -8.991 -16.043 19.324 Atomic orbital electron populations 1.21716 0.94588 1.01490 1.02380 1.19800 0.95844 0.88121 1.03207 1.22903 1.06310 0.96432 0.81700 1.70378 1.18284 1.04321 1.27581 1.20890 1.00031 0.94201 0.91189 1.17720 0.96953 0.88556 0.92326 1.21887 0.93183 1.14305 1.32351 0.93577 1.25793 1.06392 0.92989 0.93687 1.70743 1.09283 1.31903 1.43458 0.83512 0.74514 0.75929 0.76024 1.21503 1.21667 1.21045 1.20705 1.11763 0.88199 0.95108 1.45012 1.51440 1.12153 1.06044 1.21774 1.02200 0.98085 0.79389 1.21901 0.99951 0.95289 0.99116 1.21251 0.97824 0.96870 0.95520 0.90968 1.21795 1.02245 0.98032 0.98016 1.20135 1.02376 0.93650 0.90672 0.93285 0.92156 0.91812 0.91298 0.89141 0.96123 0.96255 0.92116 0.90736 0.90069 0.90216 0.91041 0.92570 0.92038 0.92877 0.88998 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.89 37.15 0.37 -1.31 16 2 C -0.03 -0.42 6.29 -27.89 -0.18 -0.60 16 3 C 0.19 3.58 7.20 -155.75 -1.12 2.46 16 4 N -0.49 -11.73 11.27 -7.27 -0.08 -11.81 16 5 C 0.07 1.63 6.28 -83.00 -0.52 1.11 16 6 C 0.08 2.32 4.68 -29.03 -0.14 2.18 16 7 C -0.58 -17.48 9.09 -34.44 -0.31 -17.79 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 9 C 0.01 0.43 5.46 -17.82 -0.10 0.33 16 10 N -0.92 -28.86 13.65 55.43 0.76 -28.10 16 11 Si 1.07 26.51 29.90 -169.99 -5.08 21.43 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 15 C -0.05 -0.99 6.56 -81.72 -0.54 -1.52 16 16 N -0.46 -8.11 3.13 -109.43 -0.34 -8.46 16 17 C 0.11 1.32 6.60 -3.91 -0.03 1.30 16 18 C -0.12 -1.37 5.22 -26.53 -0.14 -1.51 16 19 C -0.10 -1.25 2.74 -90.31 -0.25 -1.50 16 20 H 0.07 0.99 8.12 -51.92 -0.42 0.57 16 21 C -0.14 -1.53 9.17 37.16 0.34 -1.19 16 22 C -0.03 -0.52 5.30 -27.62 -0.15 -0.67 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.77 7.95 -51.93 -0.41 0.35 16 27 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.02 0.62 8.01 -51.93 -0.42 0.20 16 29 H 0.02 0.54 7.88 -51.93 -0.41 0.13 16 30 H 0.27 8.42 7.22 -40.82 -0.29 8.13 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 34 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 39 H 0.07 1.18 8.11 -51.93 -0.42 0.75 16 LS Contribution 316.45 15.07 4.77 4.77 Total: -1.00 -35.06 316.45 -9.38 -44.44 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -6.65 Total: -3.56 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -2.75 Total: -18.71 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.33 Total: -48.37 kcal Atomic # 14 Polarization: 26.51 SS G_CDS: -5.08 Total: 21.43 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.06 -9.38 -44.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259756274.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.822 kcal (2) G-P(sol) polarization free energy of solvation -35.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds