Wall clock time and date at job start Mon Mar 30 2020 06:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50692 * 109.47356 * 2 1 4 4 N 1.30794 * 125.72416 * 90.02467 * 3 2 1 5 5 C 1.34420 * 109.32314 * 179.90382 * 4 3 2 6 6 C 1.50696 * 126.10126 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47259 * 90.02555 * 6 5 4 8 8 H 1.08005 * 119.99758 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00102 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00217 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99766 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47483 * 269.99808 * 11 9 7 13 13 H 1.48499 * 109.47134 * 30.00322 * 11 9 7 14 14 H 1.48507 * 109.46904 * 150.00145 * 11 9 7 15 15 C 1.33861 * 107.79848 * 0.22314 * 5 4 3 16 16 N 1.34407 * 125.72663 * 269.98305 * 3 2 1 17 17 C 1.46468 * 128.44108 * 0.22753 * 16 3 2 18 18 C 1.53282 * 108.69242 * 162.68036 * 17 16 3 19 19 C 1.53113 * 109.70466 * 50.76871 * 18 17 16 20 20 H 1.09008 * 109.50065 * 50.06017 * 19 18 17 21 21 C 1.52998 * 109.50349 * 170.13106 * 19 18 17 22 22 C 1.50721 * 128.68252 * 180.50338 * 15 5 4 23 23 H 1.08998 * 109.47135 * 59.99957 * 1 2 3 24 24 H 1.08999 * 109.47358 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47081 * 300.00136 * 1 2 3 26 26 H 1.09002 * 109.47108 * 240.00360 * 2 1 3 27 27 H 1.08998 * 109.47173 * 120.00598 * 2 1 3 28 28 H 1.09001 * 109.47545 * 330.02896 * 6 5 4 29 29 H 1.09006 * 109.47511 * 210.02561 * 6 5 4 30 30 H 0.97001 * 119.99646 * 359.97438 * 10 9 7 31 31 H 1.09006 * 109.59924 * 282.44163 * 17 16 3 32 32 H 1.09001 * 109.60082 * 42.75560 * 17 16 3 33 33 H 1.09004 * 109.43632 * 170.84117 * 18 17 16 34 34 H 1.08999 * 109.43431 * 290.74675 * 18 17 16 35 35 H 1.08997 * 109.47231 * 59.99804 * 21 19 18 36 36 H 1.08995 * 109.47722 * 180.02562 * 21 19 18 37 37 H 1.09005 * 109.46801 * 299.99850 * 21 19 18 38 38 H 1.09007 * 109.87777 * 44.10444 * 22 15 5 39 39 H 1.08996 * 109.55413 * 283.42150 * 22 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2873 2.1406 1.0618 5 6 2.7190 3.3556 0.6823 6 6 3.1182 4.4826 1.5996 7 6 4.5903 4.3834 1.9063 8 1 5.1782 3.5843 1.4793 9 6 5.1867 5.3126 2.7320 10 7 4.4707 6.2853 3.2525 11 14 7.0113 5.1891 3.1127 12 1 7.2088 4.3532 4.3241 13 1 7.7160 4.5682 1.9625 14 1 7.5596 6.5479 3.3542 15 6 2.7260 3.3878 -0.6559 16 7 2.2942 2.1605 -1.0911 17 6 2.1571 1.7852 -2.5003 18 6 2.1520 3.0608 -3.3502 19 6 3.3505 3.9364 -2.9744 20 1 4.2589 3.3339 -2.9853 21 6 3.4838 5.0797 -3.9823 22 6 3.1355 4.5149 -1.5690 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.5487 4.4157 2.5266 29 1 2.9117 5.4367 1.1144 30 1 3.5232 6.3492 3.0551 31 1 2.9957 1.1537 -2.7937 32 1 1.2228 1.2428 -2.6449 33 1 2.2144 2.7940 -4.4052 34 1 1.2297 3.6130 -3.1698 35 1 2.5758 5.6825 -3.9701 36 1 4.3374 5.7024 -3.7146 37 1 3.6335 4.6684 -4.9806 38 1 4.0614 4.9647 -1.2103 39 1 2.3468 5.2667 -1.5969 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259756274.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:03 Heat of formation + Delta-G solvation = 0.829660 kcal Electronic energy + Delta-G solvation = -18528.290168 eV Core-core repulsion = 15855.334798 eV Total energy + Delta-G solvation = -2672.955370 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.29203 -38.21569 -36.25501 -34.80845 -33.95268 -31.52977 -30.90673 -28.78802 -26.83822 -25.41117 -24.53983 -23.68678 -21.61339 -20.99838 -19.80359 -18.92317 -17.32159 -16.83357 -15.75683 -15.72745 -15.58759 -15.50245 -15.14567 -14.83806 -14.41241 -14.35009 -13.93835 -13.61554 -13.40978 -13.21622 -12.98733 -12.64047 -12.56178 -12.47046 -12.36066 -12.04467 -11.93195 -11.83212 -11.70138 -11.59915 -11.02272 -10.71646 -10.55067 -10.20355 -9.00716 -8.61959 -6.39545 1.15426 1.47620 1.58215 1.76896 1.94480 2.22139 2.56695 3.12682 3.47996 3.56396 3.68146 3.69740 3.91232 4.08262 4.27667 4.29787 4.35172 4.39884 4.48335 4.63895 4.66590 4.70006 4.82615 4.84357 4.86524 4.92852 4.95146 4.98578 5.02684 5.11899 5.26727 5.29033 5.38450 5.45365 5.54566 5.84763 5.99139 6.12563 6.50980 6.56586 7.32805 7.39349 8.68753 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018305 B = 0.007518 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.272541 B = 3723.724188 C = 4775.460654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.030 4.030 3 C 0.197 3.803 4 N -0.545 5.545 5 C 0.005 3.995 6 C 0.095 3.905 7 C -0.592 4.592 8 H 0.032 0.968 9 C -0.035 4.035 10 N -0.934 5.934 11 Si 1.122 2.878 12 H -0.275 1.275 13 H -0.272 1.272 14 H -0.272 1.272 15 C -0.038 4.038 16 N -0.452 5.452 17 C 0.095 3.905 18 C -0.119 4.119 19 C -0.089 4.089 20 H 0.066 0.934 21 C -0.139 4.139 22 C -0.032 4.032 23 H 0.058 0.942 24 H 0.094 0.906 25 H 0.035 0.965 26 H 0.108 0.892 27 H 0.085 0.915 28 H -0.019 1.019 29 H 0.006 0.994 30 H 0.254 0.746 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.767 -10.910 -19.213 22.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.069 4.069 3 C -0.065 4.065 4 N -0.266 5.266 5 C -0.123 4.123 6 C 0.057 3.943 7 C -0.630 4.630 8 H 0.050 0.950 9 C -0.232 4.232 10 N -0.571 5.571 11 Si 0.942 3.058 12 H -0.200 1.200 13 H -0.197 1.197 14 H -0.197 1.197 15 C -0.151 4.151 16 N -0.137 5.137 17 C -0.025 4.025 18 C -0.156 4.156 19 C -0.108 4.108 20 H 0.085 0.915 21 C -0.196 4.196 22 C -0.071 4.071 23 H 0.077 0.923 24 H 0.113 0.887 25 H 0.054 0.946 26 H 0.126 0.874 27 H 0.103 0.897 28 H 0.000 1.000 29 H 0.024 0.976 30 H 0.063 0.937 31 H 0.114 0.886 32 H 0.133 0.867 33 H 0.142 0.858 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.667 -10.512 -17.752 21.152 hybrid contribution -1.269 -0.041 -0.692 1.446 sum -5.935 -10.553 -18.444 22.063 Atomic orbital electron populations 1.21672 0.92792 1.03477 1.01494 1.20089 0.97213 0.84698 1.04862 1.23857 1.03841 0.97849 0.81000 1.70210 1.20736 1.04751 1.30866 1.20522 1.04463 0.94529 0.92738 1.17359 0.95635 0.89895 0.91396 1.22100 0.94260 1.14007 1.32626 0.94959 1.27469 1.10821 0.92008 0.92895 1.70876 1.08736 1.32980 1.44502 0.82899 0.69058 0.76900 0.76935 1.20037 1.19736 1.19716 1.20910 1.09859 0.90179 0.94130 1.45301 1.49669 1.10420 1.08294 1.22359 1.04907 0.99415 0.75811 1.21936 0.98334 0.94085 1.01262 1.21219 0.98836 0.97944 0.92805 0.91519 1.21764 1.02100 0.97134 0.98591 1.20211 1.00695 0.92911 0.93285 0.92292 0.88680 0.94609 0.87377 0.89684 1.00039 0.97588 0.93652 0.88569 0.86659 0.85819 0.91388 0.92105 0.93108 0.89945 0.92247 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.89 71.98 0.71 -2.09 16 2 C -0.03 -0.74 6.29 29.84 0.19 -0.55 16 3 C 0.20 7.42 7.20 138.24 0.99 8.41 16 4 N -0.54 -27.55 11.27 -176.93 -1.99 -29.54 16 5 C 0.00 0.25 6.28 41.17 0.26 0.51 16 6 C 0.10 5.82 4.68 29.10 0.14 5.95 16 7 C -0.59 -37.86 9.09 25.60 0.23 -37.63 16 8 H 0.03 2.10 7.74 -2.91 -0.02 2.08 16 9 C -0.04 -2.18 5.46 84.65 0.46 -1.72 16 10 N -0.93 -61.32 13.65 21.45 0.29 -61.02 16 11 Si 1.12 54.09 29.90 68.60 2.05 56.14 16 12 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 13 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 14 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 15 C -0.04 -1.61 6.56 40.73 0.27 -1.34 16 16 N -0.45 -15.29 3.13 -500.11 -1.57 -16.85 16 17 C 0.10 1.89 6.60 86.48 0.57 2.47 16 18 C -0.12 -2.09 5.22 30.73 0.16 -1.93 16 19 C -0.09 -2.13 2.74 -10.59 -0.03 -2.16 16 20 H 0.07 1.68 8.12 -2.38 -0.02 1.66 16 21 C -0.14 -2.58 9.17 71.98 0.66 -1.92 16 22 C -0.03 -1.16 5.30 30.02 0.16 -1.00 16 23 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.11 1.87 7.95 -2.39 -0.02 1.85 16 27 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 28 H -0.02 -1.25 8.01 -2.39 -0.02 -1.26 16 29 H 0.01 0.37 7.88 -2.38 -0.02 0.35 16 30 H 0.25 17.03 7.22 -92.71 -0.67 16.36 16 31 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.12 1.22 8.11 -2.38 -0.02 1.20 16 34 H 0.07 1.30 8.11 -2.39 -0.02 1.28 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 39 H 0.07 2.52 8.11 -2.39 -0.02 2.50 16 Total: -1.00 -83.91 316.45 4.66 -79.26 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: 1.10 Total: 5.02 kcal Atomic # 6 Polarization: -37.77 SS G_CDS: 4.77 Total: -33.00 kcal Atomic # 7 Polarization: -104.15 SS G_CDS: -3.27 Total: -107.42 kcal Atomic # 14 Polarization: 54.09 SS G_CDS: 2.05 Total: 56.14 kcal Total: -83.91 4.66 -79.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259756274.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.087 kcal (2) G-P(sol) polarization free energy of solvation -83.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds