Wall clock time and date at job start Mon Mar 30 2020 06:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46810 * 2 1 4 4 C 1.53005 * 109.47122 * 119.99511 * 2 1 3 5 5 H 1.08996 * 109.52223 * 299.92369 * 4 2 1 6 6 C 1.53489 * 109.44067 * 179.87274 * 4 2 1 7 7 C 1.53283 * 109.50910 * 170.19450 * 6 4 2 8 8 N 1.46475 * 108.82463 * 50.72174 * 7 6 4 9 9 C 1.34407 * 128.44194 * 162.60006 * 8 7 6 10 10 N 1.30784 * 108.55265 * 180.15657 * 9 8 7 11 11 C 1.34428 * 109.31864 * 359.95039 * 10 9 8 12 12 C 1.50704 * 126.10133 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47001 * 89.97487 * 12 11 10 14 14 H 1.08004 * 119.99906 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99868 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00292 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99790 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46960 * 90.00353 * 17 15 13 19 19 H 1.48501 * 109.47193 * 210.00336 * 17 15 13 20 20 H 1.48504 * 109.47268 * 330.00431 * 17 15 13 21 21 C 1.33861 * 107.79975 * 359.97438 * 11 10 9 22 22 C 1.50711 * 128.67808 * 180.14571 * 21 11 10 23 23 H 1.09001 * 109.47118 * 60.00648 * 1 2 3 24 24 H 1.09008 * 109.47195 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47869 * 300.00031 * 1 2 3 26 26 H 1.08991 * 109.47353 * 239.99436 * 2 1 3 27 27 H 1.09000 * 109.46694 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47067 * 299.99206 * 3 2 1 29 29 H 1.08994 * 109.47185 * 59.99878 * 3 2 1 30 30 H 1.09004 * 109.63387 * 50.12155 * 6 4 2 31 31 H 1.09008 * 109.43395 * 290.14691 * 6 4 2 32 32 H 1.09002 * 109.59997 * 290.88100 * 7 6 4 33 33 H 1.08997 * 109.59925 * 170.56373 * 7 6 4 34 34 H 1.08001 * 125.72767 * 0.16079 * 9 8 7 35 35 H 1.08999 * 109.47168 * 209.97621 * 12 11 10 36 36 H 1.09000 * 109.47002 * 329.97994 * 12 11 10 37 37 H 0.96991 * 120.00544 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.74552 * 283.83100 * 22 21 11 39 39 H 1.08995 * 109.74938 * 44.50349 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6782 -0.2071 2.1398 6 6 3.5748 -0.7235 1.2470 7 6 4.0880 -1.2220 2.6027 8 7 3.4171 -2.4829 2.9275 9 6 3.7757 -3.4120 3.8301 10 7 2.9009 -4.3836 3.7973 11 6 1.9609 -4.1047 2.8775 12 6 0.7757 -4.9679 2.5293 13 6 -0.3926 -4.5940 3.4048 14 1 -0.2874 -3.8094 4.1395 15 6 -1.5960 -5.2527 3.2670 16 7 -1.7242 -6.2077 2.3719 17 14 -3.0442 -4.7887 4.3517 18 1 -3.8364 -3.7212 3.6897 19 1 -3.9030 -5.9808 4.5675 20 1 -2.5446 -4.2951 5.6601 21 6 2.2655 -2.9236 2.3262 22 6 1.5282 -2.1682 1.2505 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5139 -0.8898 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6765 1.9564 0.8899 30 1 3.9424 0.2872 1.0695 31 1 3.9353 -1.3835 0.4579 32 1 3.8674 -0.4817 3.3718 33 1 5.1646 -1.3839 2.5490 34 1 4.6411 -3.3642 4.4745 35 1 0.5096 -4.8150 1.4834 36 1 1.0295 -6.0157 2.6902 37 1 -2.5706 -6.6714 2.2752 38 1 1.7207 -2.6267 0.2806 39 1 0.4583 -2.1817 1.4583 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259757753.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:19 Heat of formation + Delta-G solvation = 30.642940 kcal Electronic energy + Delta-G solvation = -18514.091346 eV Core-core repulsion = 15842.428777 eV Total energy + Delta-G solvation = -2671.662569 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.62090 -37.93775 -34.46176 -33.10528 -31.66319 -29.89354 -28.95669 -27.21948 -25.90575 -23.82992 -23.03462 -21.93680 -20.21688 -19.27532 -18.48556 -16.38905 -16.04673 -15.36195 -14.76580 -14.50235 -14.37672 -13.93833 -13.63069 -13.52578 -13.27312 -12.38839 -12.27525 -12.13866 -11.98979 -11.82194 -11.55315 -11.42303 -11.12971 -11.03347 -10.64249 -10.55041 -10.50434 -10.33090 -10.24350 -9.73217 -9.33943 -8.93278 -8.61274 -8.26711 -7.26389 -5.88857 -3.90011 2.79393 3.35390 3.38222 3.44372 3.49776 4.08634 4.50847 4.58686 4.63184 4.76328 4.96811 4.98836 5.23253 5.26359 5.32984 5.44395 5.49780 5.55139 5.59244 5.62643 5.71374 5.85036 5.87143 5.91764 5.95701 6.11106 6.25466 6.28637 6.34464 6.50635 6.59561 6.68215 7.14103 7.62206 7.67296 7.89494 8.04044 8.08959 8.53617 9.03019 9.13587 9.71684 11.21283 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019146 B = 0.007350 C = 0.005795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.074779 B = 3808.833732 C = 4830.181882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 C -0.149 4.149 4 C -0.085 4.085 5 H 0.072 0.928 6 C -0.129 4.129 7 C 0.109 3.891 8 N -0.466 5.466 9 C 0.158 3.842 10 N -0.491 5.491 11 C 0.058 3.942 12 C 0.093 3.907 13 C -0.497 4.497 14 H 0.052 0.948 15 C 0.057 3.943 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.282 1.282 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.047 4.047 22 C -0.030 4.030 23 H 0.051 0.949 24 H 0.066 0.934 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.192 0.808 35 H 0.029 0.971 36 H 0.030 0.970 37 H 0.260 0.740 38 H 0.071 0.929 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.256 15.285 -4.989 19.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.107 4.107 3 C -0.206 4.206 4 C -0.104 4.104 5 H 0.090 0.910 6 C -0.167 4.167 7 C -0.014 4.014 8 N -0.154 5.154 9 C -0.123 4.123 10 N -0.211 5.211 11 C -0.070 4.070 12 C 0.056 3.944 13 C -0.536 4.536 14 H 0.071 0.929 15 C -0.144 4.144 16 N -0.537 5.537 17 Si 0.719 3.281 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.157 4.157 22 C -0.068 4.068 23 H 0.070 0.930 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.209 0.791 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.238 14.574 -4.583 18.391 hybrid contribution -0.649 0.979 0.321 1.218 sum 9.589 15.554 -4.262 18.762 Atomic orbital electron populations 1.21896 0.94770 1.02885 1.01380 1.21112 0.96266 0.95601 0.97763 1.21922 1.00752 0.96306 1.01622 1.21396 0.93873 0.96640 0.98473 0.90969 1.22054 0.96756 1.01877 0.95995 1.21770 0.96990 0.84612 0.97985 1.45222 1.21355 1.17435 1.31359 1.24589 1.02464 0.87555 0.97648 1.70451 1.04194 1.25676 1.20742 1.21237 0.97069 0.94621 0.94088 1.17625 0.86818 0.93563 0.96440 1.21038 0.94958 1.18766 1.18841 0.92944 1.24963 0.98614 0.95164 0.95631 1.69954 1.25401 1.23815 1.34558 0.86603 0.82538 0.77844 0.81100 1.20779 1.21230 1.19994 1.20770 0.91805 0.98928 1.04231 1.20152 1.00019 0.91445 0.95182 0.93024 0.91478 0.92704 0.91149 0.92654 0.92873 0.92778 0.89869 0.91062 0.90773 0.90078 0.79111 0.95258 0.95154 0.93054 0.91092 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.87 37.15 0.33 -1.42 16 2 C -0.09 -0.95 2.49 -90.62 -0.23 -1.17 16 3 C -0.15 -1.29 8.87 37.16 0.33 -0.96 16 4 C -0.09 -1.07 1.79 -90.11 -0.16 -1.23 16 5 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 6 C -0.13 -1.37 5.12 -26.33 -0.13 -1.50 16 7 C 0.11 1.26 6.99 -3.91 -0.03 1.23 16 8 N -0.47 -7.88 3.13 -114.08 -0.36 -8.24 16 9 C 0.16 2.90 12.66 -90.71 -1.15 1.75 16 10 N -0.49 -11.60 11.27 -11.08 -0.12 -11.73 16 11 C 0.06 1.42 6.28 -82.99 -0.52 0.90 16 12 C 0.09 2.61 5.36 -29.03 -0.16 2.45 16 13 C -0.50 -14.71 9.09 -34.44 -0.31 -15.03 16 14 H 0.05 1.57 7.74 -52.48 -0.41 1.17 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 17 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 21 C -0.05 -0.94 6.56 -81.73 -0.54 -1.48 16 22 C -0.03 -0.50 4.58 -27.63 -0.13 -0.63 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.88 6.71 -51.92 -0.35 0.53 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.42 6.23 -51.93 -0.32 0.10 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.67 5.98 -51.93 -0.31 0.36 16 31 H 0.07 0.79 8.12 -51.92 -0.42 0.37 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.19 2.59 8.06 -52.49 -0.42 2.17 16 35 H 0.03 0.82 8.01 -51.93 -0.42 0.41 16 36 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.07 1.16 8.11 -51.93 -0.42 0.74 16 39 H 0.09 1.77 7.13 -51.93 -0.37 1.40 16 LS Contribution 310.33 15.07 4.68 4.68 Total: -1.00 -33.72 310.33 -9.26 -42.98 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -6.38 Total: -2.87 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -2.79 Total: -15.53 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.25 Total: -46.59 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.72 -9.26 -42.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259757753.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.626 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds