Wall clock time and date at job start Mon Mar 30 2020 06:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 H 1.08998 * 109.49913 * 300.00412 * 4 2 1 6 6 C 1.53125 * 109.49733 * 60.06526 * 4 2 1 7 7 C 1.53272 * 109.71661 * 189.85667 * 6 4 2 8 8 N 1.46474 * 108.70147 * 309.26827 * 7 6 4 9 9 C 1.34403 * 128.44775 * 197.27646 * 8 7 6 10 10 N 1.30781 * 108.55957 * 179.87511 * 9 8 7 11 11 C 1.34430 * 109.31914 * 0.04117 * 10 9 8 12 12 C 1.50703 * 126.10353 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.46834 * 270.02154 * 12 11 10 14 14 H 1.08001 * 120.00449 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00156 * 179.97438 * 13 12 11 16 16 N 1.31522 * 119.99647 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00514 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47088 * 90.00352 * 17 15 13 19 19 H 1.48500 * 109.47719 * 210.00139 * 17 15 13 20 20 H 1.48499 * 109.47345 * 330.00481 * 17 15 13 21 21 C 1.33863 * 107.79483 * 0.02562 * 11 10 9 22 22 C 1.50723 * 128.66613 * 179.82081 * 21 11 10 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 27 27 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 28 28 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 30 30 H 1.08997 * 109.43010 * 309.93978 * 6 4 2 31 31 H 1.09008 * 109.42442 * 69.78401 * 6 4 2 32 32 H 1.09002 * 109.59877 * 69.03089 * 7 6 4 33 33 H 1.09001 * 109.60027 * 189.34155 * 7 6 4 34 34 H 1.08004 * 125.72244 * 359.87194 * 9 8 7 35 35 H 1.08997 * 109.47194 * 30.02326 * 12 11 10 36 36 H 1.09001 * 109.46733 * 150.02480 * 12 11 10 37 37 H 0.96997 * 119.99903 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.72962 * 76.21186 * 22 21 11 39 39 H 1.09005 * 109.77992 * 315.48208 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6769 -0.2076 2.1395 6 6 1.5313 -2.1654 1.2492 7 6 1.8277 -2.8181 2.6040 8 7 3.2405 -2.6073 2.9278 9 6 3.9967 -3.2551 3.8306 10 7 5.2047 -2.7553 3.7971 11 6 5.2559 -1.7769 2.8766 12 6 6.4651 -0.9478 2.5283 13 6 6.5018 0.2790 3.4027 14 1 5.7273 0.4418 4.1375 15 6 7.5248 1.1931 3.2654 16 7 8.4684 0.9946 2.3709 17 14 7.5700 2.7141 4.3488 18 1 8.3348 2.4176 5.5867 19 1 8.2275 3.8252 3.6151 20 1 6.1838 3.1088 4.7061 21 6 4.0407 -1.6698 2.3255 22 6 3.5748 -0.7226 1.2496 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 0.4560 -2.1710 1.0714 31 1 2.0316 -2.7259 0.4594 32 1 1.2043 -2.3626 3.3734 33 1 1.6182 -3.8864 2.5488 34 1 3.6627 -4.0545 4.4755 35 1 7.3681 -1.5364 2.6900 36 1 6.4101 -0.6467 1.4821 37 1 9.1879 1.6379 2.2741 38 1 3.9422 -1.0580 0.2797 39 1 3.9445 0.2817 1.4568 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259757756.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:22 Heat of formation + Delta-G solvation = 30.679506 kcal Electronic energy + Delta-G solvation = -18515.959437 eV Core-core repulsion = 15844.298453 eV Total energy + Delta-G solvation = -2671.660984 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.62352 -37.95521 -34.46260 -33.10607 -31.66322 -29.89638 -28.95866 -27.21966 -25.90602 -23.83548 -23.03364 -21.93204 -20.21828 -19.27641 -18.48473 -16.38998 -16.04757 -15.36229 -14.76752 -14.50377 -14.37689 -13.94052 -13.63216 -13.52626 -13.27324 -12.38659 -12.27445 -12.13759 -11.98847 -11.82072 -11.55427 -11.42300 -11.12824 -11.03201 -10.64424 -10.55028 -10.50257 -10.33028 -10.24117 -9.73395 -9.33857 -8.93411 -8.61311 -8.26487 -7.26361 -5.88867 -3.90030 2.79436 3.35409 3.39204 3.44771 3.48489 4.08615 4.50503 4.58663 4.63822 4.76229 4.96948 4.98864 5.23298 5.26372 5.33215 5.44490 5.49984 5.55222 5.59620 5.62643 5.71384 5.85134 5.87213 5.91875 5.95923 6.11176 6.25483 6.28804 6.34521 6.50699 6.59744 6.68273 7.14152 7.62207 7.67353 7.89502 8.04059 8.09007 8.53627 9.03003 9.13589 9.71683 11.21264 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019144 B = 0.007353 C = 0.005797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.244155 B = 3807.279808 C = 4828.635479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 C -0.152 4.152 4 C -0.085 4.085 5 H 0.072 0.928 6 C -0.129 4.129 7 C 0.110 3.890 8 N -0.466 5.466 9 C 0.158 3.842 10 N -0.491 5.491 11 C 0.058 3.942 12 C 0.094 3.906 13 C -0.497 4.497 14 H 0.052 0.948 15 C 0.057 3.943 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.047 4.047 22 C -0.030 4.030 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.192 0.808 35 H 0.030 0.970 36 H 0.029 0.971 37 H 0.260 0.740 38 H 0.071 0.929 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.836 -4.558 -4.987 19.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 C -0.209 4.209 4 C -0.104 4.104 5 H 0.090 0.910 6 C -0.167 4.167 7 C -0.013 4.013 8 N -0.154 5.154 9 C -0.123 4.123 10 N -0.211 5.211 11 C -0.070 4.070 12 C 0.056 3.944 13 C -0.536 4.536 14 H 0.071 0.929 15 C -0.144 4.144 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.157 4.157 22 C -0.068 4.068 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.209 0.791 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.166 -4.773 -4.587 18.398 hybrid contribution -0.697 0.928 0.337 1.208 sum -17.863 -3.845 -4.250 18.760 Atomic orbital electron populations 1.21924 0.95653 1.01406 1.01625 1.21112 0.95213 0.96657 0.97753 1.21897 1.02307 0.95344 1.01377 1.21330 0.96107 0.94478 0.98491 0.90978 1.21987 1.01928 0.96753 0.96030 1.21768 0.80396 1.01202 0.97971 1.45221 1.09618 1.29202 1.31330 1.24588 0.87920 1.02110 0.97645 1.70451 1.18088 1.11799 1.20738 1.21238 0.95892 0.95807 0.94083 1.17623 0.88309 0.92060 0.96449 1.21034 1.08906 1.04819 1.18840 0.92947 1.24965 0.95611 0.98193 0.95614 1.69962 1.12890 1.36399 1.34480 0.86599 0.78053 0.82730 0.80661 1.20704 1.21287 1.20034 1.20774 0.92189 0.98541 1.04216 1.20158 0.92921 0.98543 0.95172 0.92651 0.92868 0.92777 0.91148 0.92705 0.91474 0.93023 0.89895 0.91061 0.90776 0.90046 0.79113 0.95165 0.95248 0.93061 0.91090 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.87 37.16 0.33 -0.96 16 2 C -0.09 -0.95 2.49 -90.62 -0.23 -1.17 16 3 C -0.15 -1.75 8.87 37.16 0.33 -1.42 16 4 C -0.09 -1.08 1.79 -90.31 -0.16 -1.24 16 5 H 0.07 0.98 8.12 -51.93 -0.42 0.55 16 6 C -0.13 -1.37 5.10 -26.53 -0.14 -1.51 16 7 C 0.11 1.26 7.00 -3.92 -0.03 1.23 16 8 N -0.47 -7.89 3.13 -114.08 -0.36 -8.24 16 9 C 0.16 2.90 12.66 -90.72 -1.15 1.75 16 10 N -0.49 -11.60 11.27 -11.08 -0.12 -11.73 16 11 C 0.06 1.42 6.28 -82.99 -0.52 0.89 16 12 C 0.09 2.61 5.36 -29.04 -0.16 2.46 16 13 C -0.50 -14.71 9.09 -34.44 -0.31 -15.03 16 14 H 0.05 1.57 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 17 Si 0.89 22.36 29.54 -169.99 -5.02 17.33 16 18 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C -0.05 -0.94 6.56 -81.72 -0.54 -1.48 16 22 C -0.03 -0.50 4.58 -27.62 -0.13 -0.63 16 23 H 0.05 0.42 6.23 -51.93 -0.32 0.10 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.87 6.71 -51.93 -0.35 0.53 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.67 5.96 -51.93 -0.31 0.36 16 31 H 0.07 0.80 8.12 -51.92 -0.42 0.37 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.19 2.59 8.06 -52.48 -0.42 2.17 16 35 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.03 0.82 8.01 -51.93 -0.42 0.41 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.07 1.16 8.11 -51.93 -0.42 0.74 16 39 H 0.09 1.77 7.13 -51.93 -0.37 1.40 16 LS Contribution 310.28 15.07 4.68 4.68 Total: -1.00 -33.72 310.28 -9.26 -42.98 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -6.38 Total: -2.86 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -2.79 Total: -15.53 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.25 Total: -46.59 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.72 -9.26 -42.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259757756.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.655 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds