Wall clock time and date at job start Mon Mar 30 2020 06:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 H 1.08998 * 109.49913 * 300.00412 * 4 2 1 6 6 C 1.53125 * 109.49733 * 60.06526 * 4 2 1 7 7 C 1.53272 * 109.71661 * 189.85667 * 6 4 2 8 8 N 1.46474 * 108.70147 * 309.26827 * 7 6 4 9 9 C 1.34403 * 128.44775 * 197.27646 * 8 7 6 10 10 N 1.30781 * 108.55957 * 179.87511 * 9 8 7 11 11 C 1.34430 * 109.31914 * 0.04117 * 10 9 8 12 12 C 1.50703 * 126.10353 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.46834 * 270.02154 * 12 11 10 14 14 H 1.08001 * 120.00449 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00156 * 179.97438 * 13 12 11 16 16 N 1.31522 * 119.99647 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00514 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47088 * 90.00352 * 17 15 13 19 19 H 1.48500 * 109.47719 * 210.00139 * 17 15 13 20 20 H 1.48499 * 109.47345 * 330.00481 * 17 15 13 21 21 C 1.33863 * 107.79483 * 0.02562 * 11 10 9 22 22 C 1.50723 * 128.66613 * 179.82081 * 21 11 10 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 27 27 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 28 28 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 30 30 H 1.08997 * 109.43010 * 309.93978 * 6 4 2 31 31 H 1.09008 * 109.42442 * 69.78401 * 6 4 2 32 32 H 1.09002 * 109.59877 * 69.03089 * 7 6 4 33 33 H 1.09001 * 109.60027 * 189.34155 * 7 6 4 34 34 H 1.08004 * 125.72244 * 359.87194 * 9 8 7 35 35 H 1.08997 * 109.47194 * 30.02326 * 12 11 10 36 36 H 1.09001 * 109.46733 * 150.02480 * 12 11 10 37 37 H 0.96997 * 119.99903 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.72962 * 76.21186 * 22 21 11 39 39 H 1.09005 * 109.77992 * 315.48208 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6769 -0.2076 2.1395 6 6 1.5313 -2.1654 1.2492 7 6 1.8277 -2.8181 2.6040 8 7 3.2405 -2.6073 2.9278 9 6 3.9967 -3.2551 3.8306 10 7 5.2047 -2.7553 3.7971 11 6 5.2559 -1.7769 2.8766 12 6 6.4651 -0.9478 2.5283 13 6 6.5018 0.2790 3.4027 14 1 5.7273 0.4418 4.1375 15 6 7.5248 1.1931 3.2654 16 7 8.4684 0.9946 2.3709 17 14 7.5700 2.7141 4.3488 18 1 8.3348 2.4176 5.5867 19 1 8.2275 3.8252 3.6151 20 1 6.1838 3.1088 4.7061 21 6 4.0407 -1.6698 2.3255 22 6 3.5748 -0.7226 1.2496 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 0.4560 -2.1710 1.0714 31 1 2.0316 -2.7259 0.4594 32 1 1.2043 -2.3626 3.3734 33 1 1.6182 -3.8864 2.5488 34 1 3.6627 -4.0545 4.4755 35 1 7.3681 -1.5364 2.6900 36 1 6.4101 -0.6467 1.4821 37 1 9.1879 1.6379 2.2741 38 1 3.9422 -1.0580 0.2797 39 1 3.9445 0.2817 1.4568 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259757756.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:22 Heat of formation + Delta-G solvation = 11.284304 kcal Electronic energy + Delta-G solvation = -18516.800476 eV Core-core repulsion = 15844.298453 eV Total energy + Delta-G solvation = -2672.502023 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.10428 -39.00362 -35.90744 -34.97899 -33.23181 -31.16359 -30.71973 -28.21130 -27.48417 -25.04460 -24.94456 -23.14309 -21.46687 -20.48488 -19.89978 -18.51136 -17.60650 -16.56433 -16.45084 -15.78063 -15.51195 -15.15131 -14.98039 -14.65773 -14.49198 -14.19803 -13.87992 -13.36512 -13.26015 -13.00344 -12.95088 -12.67734 -12.62162 -12.55936 -12.43887 -11.97127 -11.84500 -11.56397 -11.45850 -11.27912 -11.19017 -10.66568 -10.49619 -10.13659 -8.95008 -8.15764 -6.28917 1.29358 1.37176 1.39715 1.50383 2.09278 2.31867 2.50989 3.12509 3.56429 3.70242 3.78222 3.89905 4.02023 4.18234 4.28214 4.42324 4.48102 4.50198 4.58974 4.68865 4.79924 4.86832 4.89595 4.98294 4.99637 5.03866 5.10080 5.15144 5.28428 5.31079 5.35087 5.54121 5.55676 5.59938 5.63847 5.77189 5.99379 6.27825 6.62588 6.80232 7.37713 7.42192 8.93112 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019144 B = 0.007353 C = 0.005797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.244155 B = 3807.279808 C = 4828.635479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.154 4.154 4 C -0.077 4.077 5 H 0.065 0.935 6 C -0.124 4.124 7 C 0.099 3.901 8 N -0.457 5.457 9 C 0.175 3.825 10 N -0.549 5.549 11 C 0.000 4.000 12 C 0.108 3.892 13 C -0.516 4.516 14 H 0.041 0.959 15 C 0.005 3.995 16 N -0.931 5.931 17 Si 0.965 3.035 18 H -0.275 1.275 19 H -0.273 1.273 20 H -0.267 1.267 21 C -0.035 4.035 22 C -0.030 4.030 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.039 0.961 29 H 0.066 0.934 30 H 0.122 0.878 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.119 0.881 34 H 0.243 0.757 35 H -0.014 1.014 36 H 0.010 0.990 37 H 0.266 0.734 38 H 0.070 0.930 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.487 -4.943 -4.705 22.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 C -0.212 4.212 4 C -0.096 4.096 5 H 0.083 0.917 6 C -0.162 4.162 7 C -0.021 4.021 8 N -0.142 5.142 9 C -0.107 4.107 10 N -0.269 5.269 11 C -0.127 4.127 12 C 0.070 3.930 13 C -0.555 4.555 14 H 0.060 0.940 15 C -0.193 4.193 16 N -0.571 5.571 17 Si 0.789 3.211 18 H -0.200 1.200 19 H -0.198 1.198 20 H -0.191 1.191 21 C -0.148 4.148 22 C -0.068 4.068 23 H 0.092 0.908 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.140 0.860 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.137 0.863 34 H 0.259 0.741 35 H 0.004 0.996 36 H 0.028 0.972 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.854 -5.168 -4.319 21.915 hybrid contribution 0.420 0.981 0.230 1.092 sum -20.434 -4.186 -4.089 21.255 Atomic orbital electron populations 1.21881 0.93222 1.02776 1.02152 1.21084 0.97067 0.95396 0.96748 1.21914 1.00618 0.96664 1.01967 1.21268 0.92293 0.96719 0.99275 0.91664 1.22024 1.04150 0.94447 0.95532 1.22321 0.76840 1.03994 0.98974 1.45490 1.11534 1.27342 1.29880 1.25422 0.86448 1.01706 0.97092 1.70267 1.21682 1.12918 1.22039 1.20780 0.96433 0.98015 0.97460 1.17208 0.88732 0.91878 0.95148 1.21223 1.09124 1.06008 1.19115 0.94017 1.25898 0.94859 1.01571 0.96972 1.70087 1.13448 1.37750 1.35845 0.85460 0.78535 0.78496 0.78631 1.20048 1.19775 1.19098 1.20924 0.91407 0.98778 1.03729 1.20182 0.96657 0.95983 0.93999 0.90796 0.91978 0.92715 0.90839 0.93063 0.94172 0.91474 0.85973 0.91330 0.88679 0.86332 0.74145 0.99565 0.97195 0.92555 0.91137 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.87 71.98 0.64 -1.29 16 2 C -0.08 -1.63 2.49 -10.79 -0.03 -1.66 16 3 C -0.15 -3.49 8.87 71.98 0.64 -2.85 16 4 C -0.08 -1.80 1.79 -10.59 -0.02 -1.82 16 5 H 0.06 1.64 8.12 -2.39 -0.02 1.62 16 6 C -0.12 -2.12 5.10 30.73 0.16 -1.96 16 7 C 0.10 1.82 7.00 86.48 0.61 2.42 16 8 N -0.46 -14.53 3.13 -514.85 -1.61 -16.14 16 9 C 0.18 6.12 12.66 180.38 2.28 8.41 16 10 N -0.55 -26.64 11.27 -188.95 -2.13 -28.77 16 11 C 0.00 0.01 6.28 41.17 0.26 0.26 16 12 C 0.11 6.57 5.36 29.10 0.16 6.72 16 13 C -0.52 -32.36 9.09 25.60 0.23 -32.12 16 14 H 0.04 2.63 7.74 -2.91 -0.02 2.61 16 15 C 0.00 0.28 5.46 84.65 0.46 0.74 16 16 N -0.93 -59.18 13.29 21.45 0.28 -58.89 16 17 Si 0.96 46.97 29.54 68.60 2.03 49.00 16 18 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 19 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 21 C -0.03 -1.44 6.56 40.73 0.27 -1.17 16 22 C -0.03 -1.04 4.58 30.02 0.14 -0.90 16 23 H 0.07 0.74 6.23 -2.39 -0.01 0.72 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.04 1.10 6.71 -2.39 -0.02 1.09 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.12 1.22 5.96 -2.39 -0.01 1.21 16 31 H 0.07 1.27 8.12 -2.38 -0.02 1.25 16 32 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.24 5.57 8.06 -2.91 -0.02 5.54 16 35 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 36 H 0.01 0.61 8.01 -2.39 -0.02 0.59 16 37 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 38 H 0.07 2.41 8.11 -2.39 -0.02 2.39 16 39 H 0.06 2.54 7.13 -2.38 -0.02 2.52 16 Total: -1.00 -79.84 310.28 5.37 -74.47 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: 1.01 Total: 5.54 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: 5.79 Total: -25.21 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -3.46 Total: -103.80 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -79.84 5.37 -74.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259757756.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.757 kcal (2) G-P(sol) polarization free energy of solvation -79.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds