Wall clock time and date at job start Mon Mar 30 2020 06:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47109 * 2 1 4 4 C 1.53001 * 109.47566 * 120.00243 * 2 1 3 5 5 C 1.50698 * 109.47323 * 175.00271 * 4 2 1 6 6 N 1.30793 * 125.71852 * 276.13148 * 5 4 2 7 7 C 1.34429 * 109.31706 * 179.97438 * 6 5 4 8 8 C 1.33863 * 107.79867 * 359.96446 * 7 6 5 9 9 N 1.34403 * 125.72484 * 96.16470 * 5 4 2 10 10 C 1.46471 * 128.44850 * 0.13404 * 9 5 4 11 11 H 1.09004 * 109.60258 * 282.39154 * 10 9 5 12 12 C 1.50696 * 109.72864 * 42.78498 * 10 9 5 13 13 H 1.08001 * 120.00434 * 26.64451 * 12 10 9 14 14 C 1.37880 * 120.00366 * 206.64434 * 12 10 9 15 15 N 1.31509 * 120.00306 * 185.83039 * 14 12 10 16 16 Si 1.86801 * 119.99698 * 5.82420 * 14 12 10 17 17 H 1.48502 * 109.46824 * 84.83164 * 16 14 12 18 18 H 1.48500 * 109.47349 * 204.83200 * 16 14 12 19 19 H 1.48507 * 109.47071 * 324.83205 * 16 14 12 20 20 C 1.53273 * 108.69484 * 162.62678 * 10 9 5 21 21 C 1.53119 * 109.70724 * 50.78195 * 20 10 9 22 22 C 1.50710 * 128.68078 * 180.02562 * 8 7 6 23 23 H 1.08998 * 109.47122 * 299.99465 * 1 2 3 24 24 H 1.08997 * 109.47619 * 59.99900 * 1 2 3 25 25 H 1.09003 * 109.46897 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47451 * 240.00032 * 2 1 3 27 27 H 1.09003 * 109.46836 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47305 * 299.99803 * 3 2 1 29 29 H 1.09001 * 109.47099 * 60.00596 * 3 2 1 30 30 H 1.09000 * 109.46882 * 54.99493 * 4 2 1 31 31 H 1.09007 * 109.47032 * 295.00054 * 4 2 1 32 32 H 1.07996 * 126.10026 * 180.02562 * 7 6 5 33 33 H 0.97005 * 120.00040 * 180.02562 * 15 14 12 34 34 H 1.08994 * 109.43732 * 170.85795 * 20 10 9 35 35 H 1.08999 * 109.43447 * 290.71750 * 20 10 9 36 36 H 1.09002 * 109.49611 * 50.04876 * 21 20 10 37 37 H 1.09000 * 109.49961 * 170.14404 * 21 20 10 38 38 H 1.09000 * 109.74539 * 44.64598 * 22 8 7 39 39 H 1.09004 * 109.78250 * 283.95056 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.8293 1.1888 6 7 4.2161 -1.7565 0.5590 7 6 5.5324 -1.5368 0.7210 8 6 5.6744 -0.4391 1.4739 9 7 4.4133 0.0104 1.7736 10 6 4.1304 1.1947 2.5877 11 1 3.8494 2.0252 1.9399 12 6 3.0051 0.8972 3.5448 13 1 2.8272 -0.1170 3.8707 14 6 2.2025 1.9196 4.0046 15 7 1.2953 1.6799 4.9261 16 14 2.4039 3.6455 3.3188 17 1 1.6154 3.7759 2.0672 18 1 1.9182 4.6339 4.3151 19 1 3.8382 3.8988 3.0290 20 6 5.3925 1.5619 3.3760 21 6 6.5909 1.6382 2.4259 22 6 6.9441 0.2258 1.9398 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6054 -1.7198 1.2951 31 1 1.7517 -0.1584 2.1370 32 1 6.3325 -2.1380 0.3153 33 1 0.7304 2.3992 5.2493 34 1 5.2503 2.5288 3.8586 35 1 5.5796 0.8025 4.1352 36 1 6.3376 2.2645 1.5705 37 1 7.4447 2.0665 2.9509 38 1 7.6524 0.2867 1.1136 39 1 7.3813 -0.3463 2.7582 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259757889.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:28 Heat of formation + Delta-G solvation = 28.612080 kcal Electronic energy + Delta-G solvation = -19474.143424 eV Core-core repulsion = 16802.392789 eV Total energy + Delta-G solvation = -2671.750634 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.53520 -36.18451 -35.80155 -33.21978 -31.82178 -29.82440 -28.47678 -26.69315 -26.47473 -24.40338 -22.26231 -21.21435 -20.31673 -19.05113 -18.08202 -17.29551 -16.02083 -14.88822 -14.39119 -14.12363 -13.99087 -13.62102 -13.33535 -13.20532 -13.07456 -12.95254 -12.72685 -11.93717 -11.74460 -11.63406 -11.41672 -11.23040 -11.05323 -10.66726 -10.48489 -10.47097 -10.30020 -10.24107 -10.05297 -9.90797 -9.57599 -9.11498 -8.88186 -8.39533 -7.35351 -6.42815 -4.45534 2.95525 3.03573 3.11854 3.15333 3.88373 3.92606 4.08647 4.85669 5.20417 5.28117 5.33669 5.41953 5.48193 5.50272 5.66207 5.81061 6.00564 6.05500 6.08511 6.12085 6.15138 6.19032 6.25763 6.29602 6.35546 6.37522 6.51104 6.56622 6.58299 6.73059 6.76507 6.83734 6.86396 7.13501 7.16804 7.52969 7.63658 8.04850 8.29503 8.61830 9.01597 9.14357 10.67851 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.016119 B = 0.013428 C = 0.008771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.670765 B = 2084.758115 C = 3191.701963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.149 4.149 4 C -0.048 4.048 5 C 0.239 3.761 6 N -0.520 5.520 7 C -0.042 4.042 8 C -0.046 4.046 9 N -0.417 5.417 10 C 0.230 3.770 11 H 0.048 0.952 12 C -0.531 4.531 13 H 0.086 0.914 14 C 0.089 3.911 15 N -0.874 5.874 16 Si 0.858 3.142 17 H -0.264 1.264 18 H -0.282 1.282 19 H -0.261 1.261 20 C -0.128 4.128 21 C -0.129 4.129 22 C -0.037 4.037 23 H 0.059 0.941 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.125 0.875 32 H 0.154 0.846 33 H 0.271 0.729 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.682 1.277 -6.217 7.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.101 4.101 3 C -0.206 4.206 4 C -0.087 4.087 5 C -0.024 4.024 6 N -0.240 5.240 7 C -0.191 4.191 8 C -0.163 4.163 9 N -0.096 5.096 10 C 0.129 3.871 11 H 0.066 0.934 12 C -0.569 4.569 13 H 0.104 0.896 14 C -0.117 4.117 15 N -0.509 5.509 16 Si 0.684 3.316 17 H -0.189 1.189 18 H -0.208 1.208 19 H -0.186 1.186 20 C -0.166 4.166 21 C -0.167 4.167 22 C -0.076 4.076 23 H 0.078 0.922 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.143 0.857 32 H 0.172 0.828 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.106 0.865 -6.419 7.669 hybrid contribution 0.536 1.605 0.228 1.708 sum 4.642 2.471 -6.191 8.123 Atomic orbital electron populations 1.21803 0.95340 1.01405 1.01571 1.20972 0.95173 0.95995 0.97990 1.21968 1.00792 0.96449 1.01426 1.20521 0.85169 1.01932 1.01072 1.22791 0.94382 0.88827 0.96410 1.70366 1.03724 1.25293 1.24614 1.21562 0.94021 0.98358 1.05124 1.21022 0.87466 1.00529 1.07284 1.45787 1.04787 1.22479 1.36544 1.19679 0.95179 0.82463 0.89750 0.93403 1.20872 1.12601 0.97280 1.26107 0.89595 1.24831 0.94311 0.98391 0.94156 1.69855 1.20618 1.33509 1.26946 0.87208 0.79628 0.84870 0.79884 1.18911 1.20793 1.18582 1.22187 0.93742 1.02331 0.98366 1.21766 0.98909 0.96296 0.99707 1.20064 0.92326 0.95070 1.00109 0.92213 0.93288 0.92851 0.91743 0.93284 0.93754 0.91755 0.90874 0.85716 0.82816 0.91872 0.91096 0.91286 0.92457 0.91929 0.90854 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.19 37.15 0.34 -1.88 16 2 C -0.08 -1.46 2.91 -90.62 -0.26 -1.72 16 3 C -0.15 -2.75 8.30 37.16 0.31 -2.44 16 4 C -0.05 -0.99 5.00 -27.88 -0.14 -1.13 16 5 C 0.24 5.26 6.02 -155.75 -0.94 4.32 16 6 N -0.52 -11.48 11.27 -11.02 -0.12 -11.60 16 7 C -0.04 -0.83 11.84 -17.95 -0.21 -1.04 16 8 C -0.05 -0.91 6.57 -81.73 -0.54 -1.45 16 9 N -0.42 -9.05 2.66 -103.63 -0.28 -9.32 16 10 C 0.23 5.07 2.06 -68.96 -0.14 4.93 16 11 H 0.05 1.07 4.53 -51.93 -0.24 0.84 16 12 C -0.53 -13.27 6.15 -34.44 -0.21 -13.49 16 13 H 0.09 2.44 7.75 -52.49 -0.41 2.03 16 14 C 0.09 2.26 5.47 -17.82 -0.10 2.17 16 15 N -0.87 -23.80 13.96 55.43 0.77 -23.02 16 16 Si 0.86 18.94 25.50 -169.99 -4.34 14.60 16 17 H -0.26 -5.67 6.48 56.52 0.37 -5.30 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.26 -5.49 6.07 56.52 0.34 -5.15 16 20 C -0.13 -2.52 5.06 -26.53 -0.13 -2.65 16 21 C -0.13 -2.09 5.95 -26.42 -0.16 -2.25 16 22 C -0.04 -0.59 6.31 -27.63 -0.17 -0.76 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 27 H 0.05 0.96 6.21 -51.93 -0.32 0.64 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 1.29 6.46 -51.93 -0.34 0.95 16 30 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.12 2.85 5.02 -51.92 -0.26 2.59 16 32 H 0.15 2.55 8.06 -52.49 -0.42 2.13 16 33 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.07 1.39 6.79 -51.93 -0.35 1.04 16 35 H 0.07 1.41 8.09 -51.93 -0.42 0.99 16 36 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 296.52 15.07 4.47 4.47 Total: -1.00 -27.45 296.52 -8.06 -35.52 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.21 Total: 6.75 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -2.36 Total: -17.39 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.37 Total: -43.95 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.34 Total: 14.60 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.45 -8.06 -35.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259757889.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.129 kcal (2) G-P(sol) polarization free energy of solvation -27.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds