Wall clock time and date at job start Mon Mar 30 2020 06:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47109 * 2 1 4 4 C 1.53001 * 109.47566 * 120.00243 * 2 1 3 5 5 C 1.50698 * 109.47323 * 175.00271 * 4 2 1 6 6 N 1.30793 * 125.71852 * 276.13148 * 5 4 2 7 7 C 1.34429 * 109.31706 * 179.97438 * 6 5 4 8 8 C 1.33863 * 107.79867 * 359.96446 * 7 6 5 9 9 N 1.34403 * 125.72484 * 96.16470 * 5 4 2 10 10 C 1.46471 * 128.44850 * 0.13404 * 9 5 4 11 11 H 1.09004 * 109.60258 * 282.39154 * 10 9 5 12 12 C 1.50696 * 109.72864 * 42.78498 * 10 9 5 13 13 H 1.08001 * 120.00434 * 26.64451 * 12 10 9 14 14 C 1.37880 * 120.00366 * 206.64434 * 12 10 9 15 15 N 1.31509 * 120.00306 * 185.83039 * 14 12 10 16 16 Si 1.86801 * 119.99698 * 5.82420 * 14 12 10 17 17 H 1.48502 * 109.46824 * 84.83164 * 16 14 12 18 18 H 1.48500 * 109.47349 * 204.83200 * 16 14 12 19 19 H 1.48507 * 109.47071 * 324.83205 * 16 14 12 20 20 C 1.53273 * 108.69484 * 162.62678 * 10 9 5 21 21 C 1.53119 * 109.70724 * 50.78195 * 20 10 9 22 22 C 1.50710 * 128.68078 * 180.02562 * 8 7 6 23 23 H 1.08998 * 109.47122 * 299.99465 * 1 2 3 24 24 H 1.08997 * 109.47619 * 59.99900 * 1 2 3 25 25 H 1.09003 * 109.46897 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47451 * 240.00032 * 2 1 3 27 27 H 1.09003 * 109.46836 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47305 * 299.99803 * 3 2 1 29 29 H 1.09001 * 109.47099 * 60.00596 * 3 2 1 30 30 H 1.09000 * 109.46882 * 54.99493 * 4 2 1 31 31 H 1.09007 * 109.47032 * 295.00054 * 4 2 1 32 32 H 1.07996 * 126.10026 * 180.02562 * 7 6 5 33 33 H 0.97005 * 120.00040 * 180.02562 * 15 14 12 34 34 H 1.08994 * 109.43732 * 170.85795 * 20 10 9 35 35 H 1.08999 * 109.43447 * 290.71750 * 20 10 9 36 36 H 1.09002 * 109.49611 * 50.04876 * 21 20 10 37 37 H 1.09000 * 109.49961 * 170.14404 * 21 20 10 38 38 H 1.09000 * 109.74539 * 44.64598 * 22 8 7 39 39 H 1.09004 * 109.78250 * 283.95056 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.8293 1.1888 6 7 4.2161 -1.7565 0.5590 7 6 5.5324 -1.5368 0.7210 8 6 5.6744 -0.4391 1.4739 9 7 4.4133 0.0104 1.7736 10 6 4.1304 1.1947 2.5877 11 1 3.8494 2.0252 1.9399 12 6 3.0051 0.8972 3.5448 13 1 2.8272 -0.1170 3.8707 14 6 2.2025 1.9196 4.0046 15 7 1.2953 1.6799 4.9261 16 14 2.4039 3.6455 3.3188 17 1 1.6154 3.7759 2.0672 18 1 1.9182 4.6339 4.3151 19 1 3.8382 3.8988 3.0290 20 6 5.3925 1.5619 3.3760 21 6 6.5909 1.6382 2.4259 22 6 6.9441 0.2258 1.9398 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6054 -1.7198 1.2951 31 1 1.7517 -0.1584 2.1370 32 1 6.3325 -2.1380 0.3153 33 1 0.7304 2.3992 5.2493 34 1 5.2503 2.5288 3.8586 35 1 5.5796 0.8025 4.1352 36 1 6.3376 2.2645 1.5705 37 1 7.4447 2.0665 2.9509 38 1 7.6524 0.2867 1.1136 39 1 7.3813 -0.3463 2.7582 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259757889.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:27 Heat of formation + Delta-G solvation = 13.828415 kcal Electronic energy + Delta-G solvation = -19474.784491 eV Core-core repulsion = 16802.392789 eV Total energy + Delta-G solvation = -2672.391702 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.13559 -37.73590 -37.31564 -34.94276 -33.51858 -31.43219 -30.05300 -28.17925 -28.06775 -25.98460 -23.93108 -22.71824 -21.85001 -20.57365 -19.72711 -19.17226 -17.66353 -16.56187 -15.87278 -15.84663 -15.37397 -15.09235 -14.87535 -14.75628 -14.55789 -14.46940 -14.41577 -13.47374 -13.29451 -13.17770 -12.97553 -12.70468 -12.64818 -12.30706 -12.06447 -11.89305 -11.79269 -11.72350 -11.62099 -11.45796 -11.33982 -10.85121 -10.70218 -10.11938 -8.90212 -8.40869 -6.47049 1.27207 1.31629 1.36081 1.40173 2.22039 2.26675 2.32000 2.95303 3.70134 3.86883 3.95197 4.00779 4.07519 4.08577 4.17017 4.31785 4.44836 4.55318 4.67073 4.73992 4.76002 4.81097 4.90690 4.95317 4.97077 4.97265 5.04140 5.09251 5.13304 5.21185 5.26624 5.29388 5.39233 5.46427 5.56601 5.88071 6.05604 6.14345 6.50618 6.64355 7.15887 7.39448 8.73860 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.016119 B = 0.013428 C = 0.008771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.670765 B = 2084.758115 C = 3191.701963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.076 4.076 3 C -0.143 4.143 4 C -0.045 4.045 5 C 0.216 3.784 6 N -0.539 5.539 7 C -0.054 4.054 8 C -0.051 4.051 9 N -0.428 5.428 10 C 0.234 3.766 11 H 0.048 0.952 12 C -0.522 4.522 13 H 0.036 0.964 14 C 0.046 3.954 15 N -0.922 5.922 16 Si 0.909 3.091 17 H -0.254 1.254 18 H -0.283 1.283 19 H -0.239 1.239 20 C -0.129 4.129 21 C -0.122 4.122 22 C -0.035 4.035 23 H 0.043 0.957 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.033 0.967 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.186 0.814 33 H 0.272 0.728 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.674 2.457 -7.990 10.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.096 4.096 3 C -0.200 4.200 4 C -0.084 4.084 5 C -0.047 4.047 6 N -0.260 5.260 7 C -0.202 4.202 8 C -0.167 4.167 9 N -0.108 5.108 10 C 0.132 3.868 11 H 0.066 0.934 12 C -0.560 4.560 13 H 0.055 0.945 14 C -0.156 4.156 15 N -0.560 5.560 16 Si 0.732 3.268 17 H -0.179 1.179 18 H -0.209 1.209 19 H -0.162 1.162 20 C -0.168 4.168 21 C -0.160 4.160 22 C -0.073 4.073 23 H 0.063 0.937 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.053 0.947 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.203 0.797 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.126 0.874 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.124 2.032 -8.209 10.441 hybrid contribution -0.070 1.093 0.798 1.355 sum 6.053 3.124 -7.411 10.066 Atomic orbital electron populations 1.21768 0.93470 1.02366 1.02002 1.20946 0.96694 0.95401 0.96536 1.21903 0.99770 0.96721 1.01650 1.20427 0.85110 1.01691 1.01155 1.23027 0.94959 0.89473 0.97238 1.70340 1.05095 1.25424 1.25102 1.22140 0.93864 0.98926 1.05267 1.21783 0.88051 1.00449 1.06422 1.45810 1.05802 1.22494 1.36729 1.19574 0.95317 0.82678 0.89200 0.93415 1.20794 1.13849 0.94985 1.26344 0.94539 1.25482 0.93787 1.02140 0.94160 1.69984 1.22187 1.34845 1.28940 0.86373 0.80960 0.80024 0.79455 1.17888 1.20904 1.16250 1.22123 0.94313 1.01740 0.98577 1.21738 0.98231 0.96931 0.99069 1.20262 0.90873 0.94413 1.01762 0.93733 0.90797 0.91735 0.91307 0.94747 0.91041 0.93821 0.90971 0.88813 0.79691 0.91835 0.90999 0.92719 0.92258 0.88403 0.87401 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 9.19 71.98 0.66 -3.51 16 2 C -0.08 -2.70 2.91 -10.79 -0.03 -2.73 16 3 C -0.14 -5.15 8.30 71.98 0.60 -4.55 16 4 C -0.05 -1.90 5.00 29.85 0.15 -1.75 16 5 C 0.22 9.60 6.02 138.25 0.83 10.44 16 6 N -0.54 -23.58 11.27 -188.78 -2.13 -25.71 16 7 C -0.05 -2.06 11.84 83.30 0.99 -1.07 16 8 C -0.05 -1.90 6.57 40.73 0.27 -1.64 16 9 N -0.43 -18.50 2.66 -481.77 -1.28 -19.79 16 10 C 0.23 10.26 2.06 44.34 0.09 10.36 16 11 H 0.05 2.10 4.53 -2.38 -0.01 2.09 16 12 C -0.52 -27.13 6.15 25.60 0.16 -26.97 16 13 H 0.04 2.22 7.75 -2.91 -0.02 2.20 16 14 C 0.05 2.41 5.47 84.66 0.46 2.87 16 15 N -0.92 -52.36 13.96 21.45 0.30 -52.06 16 16 Si 0.91 38.82 25.50 68.60 1.75 40.57 16 17 H -0.25 -10.41 6.48 99.48 0.64 -9.77 16 18 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.24 -9.29 6.07 99.48 0.60 -8.68 16 20 C -0.13 -4.88 5.06 30.73 0.16 -4.72 16 21 C -0.12 -3.49 5.95 30.80 0.18 -3.30 16 22 C -0.04 -0.97 6.31 30.01 0.19 -0.78 16 23 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 27 H 0.03 1.31 6.21 -2.39 -0.01 1.29 16 28 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.04 1.73 6.46 -2.39 -0.02 1.71 16 30 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 31 H 0.09 4.56 5.02 -2.38 -0.01 4.55 16 32 H 0.19 5.59 8.06 -2.91 -0.02 5.57 16 33 H 0.27 14.50 8.31 -92.70 -0.77 13.73 16 34 H 0.07 2.67 6.79 -2.39 -0.02 2.65 16 35 H 0.05 2.19 8.09 -2.39 -0.02 2.18 16 36 H 0.06 1.70 8.12 -2.39 -0.02 1.68 16 37 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 Total: -1.00 -61.75 296.52 4.20 -57.56 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: 0.86 Total: 26.80 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: 4.70 Total: -27.37 kcal Atomic # 7 Polarization: -94.45 SS G_CDS: -3.11 Total: -97.56 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 1.75 Total: 40.57 kcal Total: -61.75 4.20 -57.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259757889.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.384 kcal (2) G-P(sol) polarization free energy of solvation -61.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds