Wall clock time and date at job start Mon Mar 30 2020 06:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47730 * 2 1 4 4 C 1.52998 * 109.47096 * 120.00893 * 2 1 3 5 5 C 1.50703 * 109.47083 * 174.99544 * 4 2 1 6 6 N 1.31069 * 125.96285 * 269.95529 * 5 4 2 7 7 N 1.40449 * 108.25847 * 180.08179 * 6 5 4 8 8 H 0.97005 * 126.10334 * 179.97438 * 7 6 5 9 9 C 1.34319 * 107.80554 * 359.90923 * 7 6 5 10 10 C 1.35806 * 107.83095 * 0.09840 * 9 7 6 11 11 C 1.50837 * 124.07211 * 179.86986 * 10 9 7 12 12 C 1.53368 * 108.40701 * 343.44746 * 11 10 9 13 13 C 1.53107 * 109.50783 * 49.94757 * 12 11 10 14 14 H 1.08999 * 109.46509 * 49.74891 * 13 12 11 15 15 C 1.50703 * 109.46231 * 169.72119 * 13 12 11 16 16 H 1.08000 * 119.99841 * 0.02562 * 15 13 12 17 17 C 1.37876 * 120.00094 * 180.02562 * 15 13 12 18 18 N 1.31509 * 120.00000 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00059 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47041 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46818 * 119.99864 * 19 17 15 22 22 H 1.48493 * 109.47341 * 240.00154 * 19 17 15 23 23 C 1.50827 * 128.03583 * 180.16654 * 9 7 6 24 24 H 1.09005 * 109.47081 * 299.99826 * 1 2 3 25 25 H 1.09003 * 109.47292 * 59.99156 * 1 2 3 26 26 H 1.08997 * 109.47798 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47081 * 240.00174 * 2 1 3 28 28 H 1.09005 * 109.46696 * 59.99938 * 3 2 1 29 29 H 1.08994 * 109.47538 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47422 * 300.00764 * 3 2 1 31 31 H 1.08991 * 109.47572 * 54.99561 * 4 2 1 32 32 H 1.08997 * 109.46557 * 294.99169 * 4 2 1 33 33 H 1.09002 * 109.68370 * 223.70814 * 11 10 9 34 34 H 1.08999 * 109.68379 * 103.18975 * 11 10 9 35 35 H 1.08997 * 109.46019 * 169.95923 * 12 11 10 36 36 H 1.08992 * 109.46542 * 289.93451 * 12 11 10 37 37 H 0.97001 * 120.00159 * 179.97438 * 18 17 15 38 38 H 1.09007 * 109.68353 * 43.65926 * 23 9 7 39 39 H 1.08994 * 109.71173 * 283.12387 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 1.2491 5 6 3.5419 -0.8297 1.1887 6 7 4.2217 -1.8159 0.6567 7 7 5.5903 -1.5381 0.8065 8 1 6.3234 -2.0974 0.5052 9 6 5.7031 -0.3591 1.4401 10 6 4.4498 0.1007 1.6892 11 6 4.1511 1.4014 2.3921 12 6 5.4227 1.8654 3.1132 13 6 6.6046 1.8277 2.1407 14 1 6.3322 2.3402 1.2180 15 6 7.7911 2.5156 2.7655 16 1 7.7107 2.9369 3.7567 17 6 8.9790 2.6070 2.0717 18 7 9.0770 2.0935 0.8650 19 14 10.4495 3.4602 2.8459 20 1 10.0826 3.9477 4.1997 21 1 11.5777 2.5006 2.9547 22 1 10.8572 4.6097 1.9990 23 6 6.9649 0.3701 1.8285 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6053 -1.7199 1.2950 32 1 1.7517 -0.1585 2.1368 33 1 3.3516 1.2515 3.1177 34 1 3.8483 2.1521 1.6622 35 1 5.2833 2.8836 3.4763 36 1 5.6243 1.2039 3.9557 37 1 9.9127 2.1581 0.3767 38 1 7.6770 0.3366 1.0038 39 1 7.4027 -0.0968 2.7107 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259773564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:56 Heat of formation + Delta-G solvation = 30.697826 kcal Electronic energy + Delta-G solvation = -18538.364524 eV Core-core repulsion = 15866.704335 eV Total energy + Delta-G solvation = -2671.660189 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.89599 -36.34508 -35.89676 -32.58759 -31.68154 -28.94301 -28.51581 -26.95648 -26.66407 -24.90028 -22.33979 -20.83016 -20.31095 -18.91108 -17.84095 -16.77351 -16.10993 -14.86583 -14.80827 -14.49521 -13.91010 -13.62518 -13.29535 -12.73027 -12.57010 -12.49694 -12.19988 -12.15224 -11.94972 -11.59874 -11.22078 -11.11400 -10.90890 -10.79845 -10.56983 -10.55902 -10.46706 -10.29138 -9.76716 -9.61039 -9.12535 -8.92836 -8.65950 -8.40412 -7.50521 -6.07666 -4.12969 2.55712 3.25390 3.34512 3.36901 3.38405 3.46497 4.38600 4.97149 5.02211 5.11344 5.24055 5.46592 5.49691 5.71371 5.73722 5.82951 5.88527 5.97850 6.01057 6.09305 6.11439 6.16411 6.24765 6.41651 6.48164 6.53097 6.58429 6.70324 6.76482 6.80734 6.97697 7.07471 7.29849 7.41010 7.61573 7.80637 7.97380 8.01659 8.33593 8.36970 8.92141 9.52916 10.99282 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.036308 B = 0.005652 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.999562 B = 4952.667382 C = 5287.814783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 C -0.152 4.152 4 C -0.030 4.030 5 C 0.083 3.917 6 N -0.324 5.324 7 N -0.481 5.481 8 H 0.432 0.568 9 C 0.116 3.884 10 C -0.247 4.247 11 C -0.038 4.038 12 C -0.110 4.110 13 C 0.058 3.942 14 H 0.031 0.969 15 C -0.512 4.512 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.893 5.893 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.053 4.053 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.260 0.740 38 H 0.101 0.899 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.568 -3.844 -0.213 12.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 C -0.209 4.209 4 C -0.070 4.070 5 C -0.082 4.082 6 N -0.148 5.148 7 N -0.186 5.186 8 H 0.275 0.725 9 C -0.013 4.013 10 C -0.258 4.258 11 C -0.076 4.076 12 C -0.148 4.148 13 C 0.039 3.961 14 H 0.049 0.951 15 C -0.550 4.550 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.092 4.092 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.119 0.881 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.525 -4.985 -0.949 12.592 hybrid contribution 1.489 0.744 0.490 1.735 sum -10.036 -4.241 -0.459 10.905 Atomic orbital electron populations 1.21841 0.95338 1.01408 1.01673 1.21037 0.94979 0.96843 0.97834 1.22007 1.02637 0.95172 1.01077 1.19995 0.87494 1.00845 0.98626 1.21843 0.95972 0.92739 0.97662 1.77270 0.86528 1.24016 1.26940 1.46015 1.06379 1.18162 1.48085 0.72526 1.22037 0.99285 0.86533 0.93469 1.19732 0.90950 1.01347 1.13746 1.20086 0.97885 0.92340 0.97307 1.21705 0.94842 0.99550 0.98706 1.18637 0.92143 0.90451 0.94906 0.95090 1.21271 0.95870 1.35776 1.02122 0.92269 1.24996 0.98804 0.95405 0.94776 1.69878 1.26287 1.45633 1.11412 0.86549 0.82658 0.79386 0.79511 1.19705 1.21099 1.21024 1.20776 0.90159 0.96449 1.01825 0.92625 0.92809 0.92916 0.91338 0.92577 0.91207 0.93414 0.91161 0.90300 0.93081 0.91969 0.92831 0.93482 0.92991 0.88103 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.19 37.16 0.34 -1.10 16 2 C -0.09 -1.10 2.91 -90.62 -0.26 -1.37 16 3 C -0.15 -2.01 7.85 37.16 0.29 -1.72 16 4 C -0.03 -0.42 5.12 -27.88 -0.14 -0.56 16 5 C 0.08 1.47 5.90 -82.52 -0.49 0.99 16 6 N -0.32 -6.11 12.72 33.60 0.43 -5.69 16 7 N -0.48 -8.92 7.35 33.49 0.25 -8.67 16 8 H 0.43 6.79 8.96 -182.33 -1.63 5.16 16 9 C 0.12 2.37 7.08 -82.31 -0.58 1.79 16 10 C -0.25 -4.73 4.91 -105.03 -0.52 -5.25 16 11 C -0.04 -0.68 5.46 -27.63 -0.15 -0.83 16 12 C -0.11 -2.24 5.15 -26.49 -0.14 -2.38 16 13 C 0.06 1.38 2.07 -91.53 -0.19 1.19 16 14 H 0.03 0.82 8.11 -51.93 -0.42 0.40 16 15 C -0.51 -13.41 8.52 -34.44 -0.29 -13.70 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 18 N -0.89 -24.44 11.46 55.43 0.64 -23.81 16 19 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.05 -1.19 5.19 -27.64 -0.14 -1.33 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.69 8.05 -51.93 -0.42 0.27 16 29 H 0.07 1.12 5.33 -51.93 -0.28 0.84 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.00 7.87 -51.93 -0.41 0.59 16 33 H 0.05 0.81 7.94 -51.93 -0.41 0.39 16 34 H 0.06 1.08 6.23 -51.93 -0.32 0.76 16 35 H 0.05 1.05 8.11 -51.93 -0.42 0.63 16 36 H 0.05 0.95 8.11 -51.93 -0.42 0.53 16 37 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 38 H 0.10 2.48 6.44 -51.92 -0.33 2.14 16 39 H 0.06 1.43 8.12 -51.93 -0.42 1.01 16 LS Contribution 305.22 15.07 4.60 4.60 Total: -1.00 -28.13 305.22 -9.05 -37.18 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -7.57 Total: 3.60 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -2.37 Total: -22.75 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 1.31 Total: -38.17 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.13 -9.05 -37.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259773564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.881 kcal (2) G-P(sol) polarization free energy of solvation -28.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds