Wall clock time and date at job start Mon Mar 30 2020 06:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47730 * 2 1 4 4 C 1.52998 * 109.47096 * 120.00893 * 2 1 3 5 5 C 1.50703 * 109.47083 * 174.99544 * 4 2 1 6 6 N 1.31069 * 125.96285 * 269.95529 * 5 4 2 7 7 N 1.40449 * 108.25847 * 180.08179 * 6 5 4 8 8 H 0.97005 * 126.10334 * 179.97438 * 7 6 5 9 9 C 1.34319 * 107.80554 * 359.90923 * 7 6 5 10 10 C 1.35806 * 107.83095 * 0.09840 * 9 7 6 11 11 C 1.50837 * 124.07211 * 179.86986 * 10 9 7 12 12 C 1.53368 * 108.40701 * 343.44746 * 11 10 9 13 13 C 1.53107 * 109.50783 * 49.94757 * 12 11 10 14 14 H 1.08999 * 109.46509 * 49.74891 * 13 12 11 15 15 C 1.50703 * 109.46231 * 169.72119 * 13 12 11 16 16 H 1.08000 * 119.99841 * 0.02562 * 15 13 12 17 17 C 1.37876 * 120.00094 * 180.02562 * 15 13 12 18 18 N 1.31509 * 120.00000 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00059 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47041 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46818 * 119.99864 * 19 17 15 22 22 H 1.48493 * 109.47341 * 240.00154 * 19 17 15 23 23 C 1.50827 * 128.03583 * 180.16654 * 9 7 6 24 24 H 1.09005 * 109.47081 * 299.99826 * 1 2 3 25 25 H 1.09003 * 109.47292 * 59.99156 * 1 2 3 26 26 H 1.08997 * 109.47798 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47081 * 240.00174 * 2 1 3 28 28 H 1.09005 * 109.46696 * 59.99938 * 3 2 1 29 29 H 1.08994 * 109.47538 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47422 * 300.00764 * 3 2 1 31 31 H 1.08991 * 109.47572 * 54.99561 * 4 2 1 32 32 H 1.08997 * 109.46557 * 294.99169 * 4 2 1 33 33 H 1.09002 * 109.68370 * 223.70814 * 11 10 9 34 34 H 1.08999 * 109.68379 * 103.18975 * 11 10 9 35 35 H 1.08997 * 109.46019 * 169.95923 * 12 11 10 36 36 H 1.08992 * 109.46542 * 289.93451 * 12 11 10 37 37 H 0.97001 * 120.00159 * 179.97438 * 18 17 15 38 38 H 1.09007 * 109.68353 * 43.65926 * 23 9 7 39 39 H 1.08994 * 109.71173 * 283.12387 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 1.2491 5 6 3.5419 -0.8297 1.1887 6 7 4.2217 -1.8159 0.6567 7 7 5.5903 -1.5381 0.8065 8 1 6.3234 -2.0974 0.5052 9 6 5.7031 -0.3591 1.4401 10 6 4.4498 0.1007 1.6892 11 6 4.1511 1.4014 2.3921 12 6 5.4227 1.8654 3.1132 13 6 6.6046 1.8277 2.1407 14 1 6.3322 2.3402 1.2180 15 6 7.7911 2.5156 2.7655 16 1 7.7107 2.9369 3.7567 17 6 8.9790 2.6070 2.0717 18 7 9.0770 2.0935 0.8650 19 14 10.4495 3.4602 2.8459 20 1 10.0826 3.9477 4.1997 21 1 11.5777 2.5006 2.9547 22 1 10.8572 4.6097 1.9990 23 6 6.9649 0.3701 1.8285 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6053 -1.7199 1.2950 32 1 1.7517 -0.1585 2.1368 33 1 3.3516 1.2515 3.1177 34 1 3.8483 2.1521 1.6622 35 1 5.2833 2.8836 3.4763 36 1 5.6243 1.2039 3.9557 37 1 9.9127 2.1581 0.3767 38 1 7.6770 0.3366 1.0038 39 1 7.4027 -0.0968 2.7107 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259773564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:56 Heat of formation + Delta-G solvation = 15.894818 kcal Electronic energy + Delta-G solvation = -18539.006431 eV Core-core repulsion = 15866.704335 eV Total energy + Delta-G solvation = -2672.302096 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.38501 -37.71711 -37.32242 -34.44963 -33.13404 -30.65914 -30.06769 -27.91260 -27.85287 -26.81228 -23.97905 -22.40259 -21.62308 -20.15430 -19.45297 -18.50320 -17.94642 -16.50996 -16.14444 -15.87846 -15.13594 -15.02420 -14.80073 -14.43254 -14.17652 -13.90246 -13.68924 -13.30470 -13.03094 -12.95129 -12.86193 -12.68811 -12.41886 -12.41164 -12.20934 -11.83828 -11.63808 -11.51725 -11.38905 -11.18200 -10.93338 -10.81370 -10.50839 -10.05044 -9.03878 -8.10363 -6.23074 1.03505 1.41743 1.45128 1.55639 1.90875 2.03430 2.44651 3.18942 3.77129 3.95256 4.12974 4.15213 4.27355 4.35748 4.47413 4.53931 4.68484 4.79337 4.87226 4.91681 4.94073 5.01770 5.03690 5.08286 5.14645 5.17128 5.20520 5.31944 5.36440 5.40289 5.56071 5.57805 5.61517 5.72441 5.90029 5.96710 6.03932 6.36750 6.52093 6.86034 6.89917 7.46188 8.95267 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.036308 B = 0.005652 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.999562 B = 4952.667382 C = 5287.814783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.083 4.083 3 C -0.150 4.150 4 C -0.030 4.030 5 C 0.086 3.914 6 N -0.334 5.334 7 N -0.479 5.479 8 H 0.440 0.560 9 C 0.092 3.908 10 C -0.249 4.249 11 C -0.031 4.031 12 C -0.104 4.104 13 C 0.056 3.944 14 H -0.003 1.003 15 C -0.530 4.530 16 H 0.058 0.942 17 C 0.015 3.985 18 N -0.920 5.920 19 Si 0.952 3.048 20 H -0.265 1.265 21 H -0.282 1.282 22 H -0.283 1.283 23 C -0.037 4.037 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.036 0.964 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.047 0.953 37 H 0.260 0.740 38 H 0.074 0.926 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.418 -3.767 0.659 13.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.103 4.103 3 C -0.207 4.207 4 C -0.069 4.069 5 C -0.079 4.079 6 N -0.157 5.157 7 N -0.186 5.186 8 H 0.285 0.715 9 C -0.038 4.038 10 C -0.260 4.260 11 C -0.069 4.069 12 C -0.142 4.142 13 C 0.037 3.963 14 H 0.015 0.985 15 C -0.568 4.568 16 H 0.076 0.924 17 C -0.183 4.183 18 N -0.559 5.559 19 Si 0.778 3.222 20 H -0.190 1.190 21 H -0.208 1.208 22 H -0.209 1.209 23 C -0.077 4.077 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.373 -4.915 -0.074 14.248 hybrid contribution 2.044 0.717 0.181 2.174 sum -11.329 -4.198 0.107 12.083 Atomic orbital electron populations 1.21786 0.92785 1.02375 1.02681 1.20994 0.96982 0.95837 0.96463 1.21981 1.00431 0.96077 1.02249 1.20197 0.84635 1.02149 0.99944 1.22425 0.97776 0.91506 0.96207 1.77255 0.86465 1.24745 1.27282 1.46017 1.06858 1.17823 1.47921 0.71517 1.21767 0.98904 0.87707 0.95424 1.20003 0.90763 1.01870 1.13369 1.20075 0.97354 0.91729 0.97745 1.21599 0.94603 1.00040 0.97931 1.18578 0.93066 0.90560 0.94132 0.98499 1.21617 0.96942 1.36033 1.02191 0.92358 1.25723 1.01351 0.96059 0.95195 1.70012 1.26838 1.46561 1.12522 0.85588 0.79455 0.78260 0.78863 1.18962 1.20806 1.20925 1.20361 0.90724 0.96160 1.00432 0.91355 0.92107 0.92012 0.93098 0.91214 0.94491 0.92529 0.89906 0.88478 0.89990 0.91529 0.92321 0.93444 0.93044 0.90812 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.19 71.98 0.66 -1.62 16 2 C -0.08 -1.90 2.91 -10.80 -0.03 -1.93 16 3 C -0.15 -3.69 7.85 71.98 0.56 -3.13 16 4 C -0.03 -0.75 5.12 29.85 0.15 -0.59 16 5 C 0.09 2.93 5.90 42.93 0.25 3.18 16 6 N -0.33 -12.32 12.72 -47.62 -0.61 -12.92 16 7 N -0.48 -17.88 7.35 -47.96 -0.35 -18.24 16 8 H 0.44 14.12 8.96 -213.09 -1.91 12.21 16 9 C 0.09 3.78 7.08 41.65 0.29 4.07 16 10 C -0.25 -9.34 4.91 -20.13 -0.10 -9.43 16 11 C -0.03 -1.06 5.46 30.01 0.16 -0.90 16 12 C -0.10 -4.17 5.15 30.75 0.16 -4.02 16 13 C 0.06 2.73 2.07 -11.38 -0.02 2.70 16 14 H 0.00 -0.18 8.11 -2.39 -0.02 -0.19 16 15 C -0.53 -28.19 8.52 25.60 0.22 -27.97 16 16 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 17 C 0.02 0.82 5.30 84.66 0.45 1.27 16 18 N -0.92 -51.69 11.46 21.45 0.25 -51.45 16 19 Si 0.95 42.45 29.54 68.60 2.03 44.48 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 C -0.04 -1.73 5.19 30.01 0.16 -1.58 16 24 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.07 1.50 8.05 -2.38 -0.02 1.48 16 29 H 0.04 1.15 5.33 -2.39 -0.01 1.13 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.10 2.07 7.87 -2.39 -0.02 2.05 16 33 H 0.08 2.31 7.94 -2.39 -0.02 2.29 16 34 H 0.07 2.24 6.23 -2.39 -0.01 2.22 16 35 H 0.06 2.26 8.11 -2.39 -0.02 2.24 16 36 H 0.05 1.88 8.11 -2.39 -0.02 1.86 16 37 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 38 H 0.07 3.81 6.44 -2.38 -0.02 3.80 16 39 H 0.06 2.59 8.12 -2.39 -0.02 2.57 16 Total: -1.00 -60.57 305.22 3.36 -57.22 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -0.88 Total: 20.83 kcal Atomic # 6 Polarization: -42.84 SS G_CDS: 2.92 Total: -39.93 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -0.71 Total: -82.60 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -60.57 3.36 -57.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259773564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.112 kcal (2) G-P(sol) polarization free energy of solvation -60.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds