Wall clock time and date at job start Mon Mar 30 2020 06:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47336 * 2 1 4 4 C 1.53009 * 109.46986 * 119.99823 * 2 1 3 5 5 H 1.08997 * 109.46909 * 301.01383 * 4 2 1 6 6 C 1.50697 * 109.47198 * 181.01419 * 4 2 1 7 7 H 1.08005 * 119.99819 * 333.61646 * 6 4 2 8 8 C 1.37878 * 119.99922 * 153.61891 * 6 4 2 9 9 N 1.31511 * 119.99941 * 6.85385 * 8 6 4 10 10 Si 1.86802 * 120.00060 * 186.85739 * 8 6 4 11 11 H 1.48493 * 109.47204 * 179.97438 * 10 8 6 12 12 H 1.48496 * 109.46855 * 59.99534 * 10 8 6 13 13 H 1.48500 * 109.46949 * 300.00134 * 10 8 6 14 14 C 1.50700 * 109.47032 * 61.01152 * 4 2 1 15 15 C 1.39876 * 126.03947 * 60.02650 * 14 4 2 16 16 N 1.30830 * 108.20192 * 179.97438 * 15 14 4 17 17 N 1.40084 * 108.20775 * 0.02562 * 16 15 14 18 18 C 1.46502 * 126.03675 * 179.97438 * 17 16 15 19 19 C 1.53780 * 113.61430 * 194.11060 * 18 17 16 20 20 C 1.53949 * 87.02071 * 220.05164 * 19 18 17 21 21 C 1.53782 * 113.61015 * 96.50516 * 18 17 16 22 22 C 1.34942 * 107.92496 * 359.76085 * 17 16 15 23 23 H 1.09000 * 109.47105 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47347 * 300.00537 * 1 2 3 25 25 H 1.09004 * 109.46898 * 59.99874 * 1 2 3 26 26 H 1.08997 * 109.47347 * 239.99463 * 2 1 3 27 27 H 1.08999 * 109.47163 * 185.44033 * 3 2 1 28 28 H 1.09003 * 109.47396 * 305.44165 * 3 2 1 29 29 H 1.09001 * 109.47278 * 65.44531 * 3 2 1 30 30 H 0.97001 * 120.00433 * 354.91937 * 9 8 6 31 31 H 1.08007 * 125.89822 * 359.95488 * 15 14 4 32 32 H 1.09001 * 112.84929 * 325.31571 * 18 17 16 33 33 H 1.08996 * 113.61606 * 334.57476 * 19 18 17 34 34 H 1.09001 * 113.60959 * 105.47664 * 19 18 17 35 35 H 1.08999 * 113.53849 * 270.81381 * 20 19 18 36 36 H 1.09003 * 113.74592 * 139.94274 * 20 19 18 37 37 H 1.08995 * 113.61357 * 254.53011 * 21 18 17 38 38 H 1.09000 * 113.61361 * 25.43373 * 21 18 17 39 39 H 1.08001 * 126.12670 * 180.24348 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6619 -0.2180 2.1392 6 6 3.5467 -0.6995 1.2620 7 1 4.0936 -0.6272 0.3335 8 6 4.2272 -0.7720 2.4590 9 7 3.5704 -0.9953 3.5763 10 14 6.0820 -0.5530 2.4938 11 1 6.5686 -0.6741 3.8915 12 1 6.4319 0.7889 1.9628 13 1 6.7197 -1.5991 1.6546 14 6 1.5582 -2.1491 1.2369 15 6 1.8395 -3.1040 0.2542 16 7 1.2489 -4.2221 0.5900 17 7 0.5716 -4.0137 1.7984 18 6 -0.2201 -5.0091 2.5255 19 6 -1.1131 -4.4046 3.6218 20 6 -0.7283 -5.6158 4.4908 21 6 0.5570 -5.7109 3.6518 22 6 0.7811 -2.7355 2.1768 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 3.1257 1.4439 -0.0974 28 1 1.5993 1.9837 -0.8372 29 1 1.7585 1.9274 0.9347 30 1 2.6012 -1.0356 3.5694 31 1 2.4402 -2.9456 -0.6292 32 1 -0.7462 -5.6971 1.8636 33 1 -0.7458 -3.4546 4.0097 34 1 -2.1700 -4.3745 3.3566 35 1 -1.3946 -6.4695 4.3671 36 1 -0.5495 -5.3664 5.5367 37 1 0.8464 -6.7337 3.4108 38 1 1.3818 -5.1186 4.0479 39 1 0.3959 -2.2642 3.0690 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259773987.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:08 Heat of formation + Delta-G solvation = 76.487067 kcal Electronic energy + Delta-G solvation = -18652.006885 eV Core-core repulsion = 15982.332266 eV Total energy + Delta-G solvation = -2669.674619 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.56349 -38.24378 -35.85689 -32.37637 -30.77602 -29.48231 -26.79880 -26.14046 -25.64102 -24.41025 -22.78177 -20.73184 -20.15917 -18.82342 -18.70503 -16.97603 -16.17763 -15.56525 -14.19009 -14.14698 -13.73898 -13.59695 -13.39971 -13.04705 -12.63673 -12.53454 -12.21245 -11.89598 -11.75441 -11.46110 -11.17826 -11.11829 -10.90292 -10.72006 -10.58230 -10.45053 -10.17351 -10.05547 -9.99015 -9.62932 -9.19682 -8.58812 -8.47645 -8.29272 -7.12652 -6.24558 -3.92975 2.76476 3.25006 3.48161 3.49466 3.67251 3.95434 4.41776 4.55113 4.60351 4.82222 4.83511 5.37164 5.48934 5.54029 5.68226 5.73689 5.80115 5.85610 5.91892 5.93236 5.97020 6.03704 6.06835 6.36588 6.38504 6.56416 6.62037 6.66974 6.71916 6.76357 7.09116 7.09627 7.22445 7.39600 7.64176 7.73397 7.95952 8.34220 8.54177 8.66190 8.99084 9.76867 11.13861 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018903 B = 0.008060 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.912864 B = 3473.037003 C = 4322.619410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.077 4.077 3 C -0.127 4.127 4 C 0.101 3.899 5 H 0.033 0.967 6 C -0.575 4.575 7 H 0.049 0.951 8 C 0.022 3.978 9 N -0.911 5.911 10 Si 1.060 2.940 11 H -0.285 1.285 12 H -0.288 1.288 13 H -0.290 1.290 14 C -0.162 4.162 15 C 0.055 3.945 16 N -0.321 5.321 17 N -0.377 5.377 18 C 0.145 3.855 19 C -0.145 4.145 20 C -0.138 4.138 21 C -0.150 4.150 22 C 0.021 3.979 23 H 0.047 0.953 24 H 0.043 0.957 25 H 0.035 0.965 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.028 0.972 29 H 0.043 0.957 30 H 0.269 0.731 31 H 0.168 0.832 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.630 -4.382 -0.669 9.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.096 4.096 3 C -0.185 4.185 4 C 0.081 3.919 5 H 0.051 0.949 6 C -0.613 4.613 7 H 0.067 0.933 8 C -0.182 4.182 9 N -0.548 5.548 10 Si 0.890 3.110 11 H -0.211 1.211 12 H -0.215 1.215 13 H -0.217 1.217 14 C -0.173 4.173 15 C -0.131 4.131 16 N -0.142 5.142 17 N -0.162 5.162 18 C 0.042 3.958 19 C -0.184 4.184 20 C -0.176 4.176 21 C -0.189 4.189 22 C -0.121 4.121 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.186 0.814 32 H 0.128 0.872 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.598 -5.710 0.082 9.505 hybrid contribution -1.043 0.736 -0.701 1.456 sum -8.640 -4.975 -0.619 9.989 Atomic orbital electron populations 1.21848 0.97690 1.00571 0.99706 1.21030 0.92854 0.95928 0.99772 1.21645 1.01717 0.95937 0.99164 1.17437 0.95587 0.85726 0.93115 0.94928 1.21804 0.90402 1.54347 0.94794 0.93311 1.25654 1.06317 0.93648 0.92621 1.70764 1.10060 1.44894 1.29045 0.83662 0.75197 0.76388 0.75789 1.21094 1.21487 1.21689 1.20933 1.00782 1.00590 0.94990 1.23524 0.98924 0.90385 1.00250 1.77081 1.14623 1.23696 0.98847 1.48275 1.41029 1.08765 1.18099 1.22618 0.92072 0.90344 0.90770 1.23402 0.99785 0.99514 0.95678 1.22717 0.97567 0.98069 0.99206 1.23452 0.97890 1.01470 0.96061 1.21999 1.03341 0.85549 1.01255 0.93426 0.93776 0.94550 0.92856 0.91952 0.95310 0.93809 0.91962 0.81449 0.87197 0.88801 0.90508 0.89857 0.90506 0.90896 0.89075 0.82895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.96 37.16 0.33 -2.20 16 2 C -0.08 -1.57 2.40 -90.62 -0.22 -1.79 16 3 C -0.13 -2.46 8.82 37.16 0.33 -2.13 16 4 C 0.10 2.40 1.38 -92.92 -0.13 2.27 16 5 H 0.03 0.84 6.89 -51.93 -0.36 0.48 16 6 C -0.58 -15.27 6.97 -34.44 -0.24 -15.51 16 7 H 0.05 1.30 7.75 -52.48 -0.41 0.89 16 8 C 0.02 0.61 5.45 -17.82 -0.10 0.51 16 9 N -0.91 -26.66 13.63 55.43 0.76 -25.90 16 10 Si 1.06 25.11 29.91 -169.99 -5.08 20.02 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 14 C -0.16 -3.67 3.42 -105.05 -0.36 -4.03 16 15 C 0.05 1.22 11.51 -17.37 -0.20 1.02 16 16 N -0.32 -6.95 12.57 30.63 0.39 -6.57 16 17 N -0.38 -7.37 3.81 -54.07 -0.21 -7.57 16 18 C 0.15 2.17 5.02 -67.12 -0.34 1.83 16 19 C -0.15 -1.77 7.46 -25.83 -0.19 -1.97 16 20 C -0.14 -1.47 8.09 -25.83 -0.21 -1.68 16 21 C -0.15 -2.07 7.88 -25.92 -0.20 -2.28 16 22 C 0.02 0.44 10.39 -17.23 -0.18 0.26 16 23 H 0.05 0.88 7.25 -51.93 -0.38 0.51 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 1.10 8.00 -51.93 -0.42 0.68 16 27 H 0.06 1.28 7.34 -51.93 -0.38 0.90 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.27 7.73 6.46 -40.82 -0.26 7.47 16 31 H 0.17 3.48 8.06 -52.48 -0.42 3.05 16 32 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.09 1.25 6.32 -51.93 -0.33 0.92 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.15 2.99 6.70 -52.49 -0.35 2.64 16 LS Contribution 315.16 15.07 4.75 4.75 Total: -1.00 -30.17 315.16 -7.43 -37.59 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.33 Total: 3.37 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -1.70 Total: -25.69 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.93 Total: -40.04 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.08 Total: 20.02 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.17 -7.43 -37.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259773987.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.082 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds