Wall clock time and date at job start Mon Mar 30 2020 06:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47336 * 2 1 4 4 C 1.53009 * 109.46986 * 119.99823 * 2 1 3 5 5 H 1.08997 * 109.46909 * 301.01383 * 4 2 1 6 6 C 1.50697 * 109.47198 * 181.01419 * 4 2 1 7 7 H 1.08005 * 119.99819 * 333.61646 * 6 4 2 8 8 C 1.37878 * 119.99922 * 153.61891 * 6 4 2 9 9 N 1.31511 * 119.99941 * 6.85385 * 8 6 4 10 10 Si 1.86802 * 120.00060 * 186.85739 * 8 6 4 11 11 H 1.48493 * 109.47204 * 179.97438 * 10 8 6 12 12 H 1.48496 * 109.46855 * 59.99534 * 10 8 6 13 13 H 1.48500 * 109.46949 * 300.00134 * 10 8 6 14 14 C 1.50700 * 109.47032 * 61.01152 * 4 2 1 15 15 C 1.39876 * 126.03947 * 60.02650 * 14 4 2 16 16 N 1.30830 * 108.20192 * 179.97438 * 15 14 4 17 17 N 1.40084 * 108.20775 * 0.02562 * 16 15 14 18 18 C 1.46502 * 126.03675 * 179.97438 * 17 16 15 19 19 C 1.53780 * 113.61430 * 194.11060 * 18 17 16 20 20 C 1.53949 * 87.02071 * 220.05164 * 19 18 17 21 21 C 1.53782 * 113.61015 * 96.50516 * 18 17 16 22 22 C 1.34942 * 107.92496 * 359.76085 * 17 16 15 23 23 H 1.09000 * 109.47105 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47347 * 300.00537 * 1 2 3 25 25 H 1.09004 * 109.46898 * 59.99874 * 1 2 3 26 26 H 1.08997 * 109.47347 * 239.99463 * 2 1 3 27 27 H 1.08999 * 109.47163 * 185.44033 * 3 2 1 28 28 H 1.09003 * 109.47396 * 305.44165 * 3 2 1 29 29 H 1.09001 * 109.47278 * 65.44531 * 3 2 1 30 30 H 0.97001 * 120.00433 * 354.91937 * 9 8 6 31 31 H 1.08007 * 125.89822 * 359.95488 * 15 14 4 32 32 H 1.09001 * 112.84929 * 325.31571 * 18 17 16 33 33 H 1.08996 * 113.61606 * 334.57476 * 19 18 17 34 34 H 1.09001 * 113.60959 * 105.47664 * 19 18 17 35 35 H 1.08999 * 113.53849 * 270.81381 * 20 19 18 36 36 H 1.09003 * 113.74592 * 139.94274 * 20 19 18 37 37 H 1.08995 * 113.61357 * 254.53011 * 21 18 17 38 38 H 1.09000 * 113.61361 * 25.43373 * 21 18 17 39 39 H 1.08001 * 126.12670 * 180.24348 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6619 -0.2180 2.1392 6 6 3.5467 -0.6995 1.2620 7 1 4.0936 -0.6272 0.3335 8 6 4.2272 -0.7720 2.4590 9 7 3.5704 -0.9953 3.5763 10 14 6.0820 -0.5530 2.4938 11 1 6.5686 -0.6741 3.8915 12 1 6.4319 0.7889 1.9628 13 1 6.7197 -1.5991 1.6546 14 6 1.5582 -2.1491 1.2369 15 6 1.8395 -3.1040 0.2542 16 7 1.2489 -4.2221 0.5900 17 7 0.5716 -4.0137 1.7984 18 6 -0.2201 -5.0091 2.5255 19 6 -1.1131 -4.4046 3.6218 20 6 -0.7283 -5.6158 4.4908 21 6 0.5570 -5.7109 3.6518 22 6 0.7811 -2.7355 2.1768 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 3.1257 1.4439 -0.0974 28 1 1.5993 1.9837 -0.8372 29 1 1.7585 1.9274 0.9347 30 1 2.6012 -1.0356 3.5694 31 1 2.4402 -2.9456 -0.6292 32 1 -0.7462 -5.6971 1.8636 33 1 -0.7458 -3.4546 4.0097 34 1 -2.1700 -4.3745 3.3566 35 1 -1.3946 -6.4695 4.3671 36 1 -0.5495 -5.3664 5.5367 37 1 0.8464 -6.7337 3.4108 38 1 1.3818 -5.1186 4.0479 39 1 0.3959 -2.2642 3.0690 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259773987.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:07 Heat of formation + Delta-G solvation = 60.720467 kcal Electronic energy + Delta-G solvation = -18652.690576 eV Core-core repulsion = 15982.332266 eV Total energy + Delta-G solvation = -2670.358310 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.13564 -39.44797 -37.56517 -34.34504 -32.30051 -31.20165 -28.52499 -27.64674 -26.73140 -25.85796 -24.65593 -22.20947 -21.68948 -20.52868 -20.02585 -18.79623 -17.80586 -16.65609 -15.80786 -15.70045 -15.59388 -15.17545 -15.07195 -14.53031 -14.12258 -13.86552 -13.73137 -13.32464 -13.16654 -12.99819 -12.80303 -12.66961 -12.52748 -12.27239 -11.96923 -11.78892 -11.66909 -11.61449 -11.46541 -11.29910 -10.97732 -10.55176 -10.36336 -10.08621 -8.87919 -8.38618 -6.09012 1.11057 1.55103 1.61655 1.78939 1.80335 2.20115 2.65110 3.30512 3.38806 3.51760 3.76708 3.79761 4.02233 4.12652 4.29761 4.42995 4.46410 4.56065 4.65190 4.66402 4.83721 4.88796 4.91291 4.93483 4.98484 5.01609 5.07054 5.10875 5.20235 5.34214 5.41269 5.45905 5.59086 5.69864 5.82789 6.01887 6.28161 6.39312 6.44007 6.85605 6.98491 7.66724 8.97922 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018903 B = 0.008060 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.912864 B = 3473.037003 C = 4322.619410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.077 4.077 3 C -0.123 4.123 4 C 0.104 3.896 5 H 0.005 0.995 6 C -0.573 4.573 7 H 0.042 0.958 8 C -0.029 4.029 9 N -0.941 5.941 10 Si 1.099 2.901 11 H -0.292 1.292 12 H -0.269 1.269 13 H -0.282 1.282 14 C -0.184 4.184 15 C 0.039 3.961 16 N -0.333 5.333 17 N -0.367 5.367 18 C 0.123 3.877 19 C -0.140 4.140 20 C -0.116 4.116 21 C -0.155 4.155 22 C 0.023 3.977 23 H 0.038 0.962 24 H 0.044 0.956 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.035 0.965 30 H 0.261 0.739 31 H 0.173 0.827 32 H 0.129 0.871 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.057 0.943 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.900 -4.967 -0.948 11.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.096 4.096 3 C -0.180 4.180 4 C 0.084 3.916 5 H 0.024 0.976 6 C -0.612 4.612 7 H 0.061 0.939 8 C -0.227 4.227 9 N -0.579 5.579 10 Si 0.924 3.076 11 H -0.218 1.218 12 H -0.195 1.195 13 H -0.208 1.208 14 C -0.195 4.195 15 C -0.146 4.146 16 N -0.155 5.155 17 N -0.152 5.152 18 C 0.021 3.979 19 C -0.178 4.178 20 C -0.153 4.153 21 C -0.193 4.193 22 C -0.121 4.121 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.190 0.810 32 H 0.146 0.854 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.133 0.867 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.883 -6.306 -0.218 10.896 hybrid contribution -0.717 0.859 -0.619 1.279 sum -9.600 -5.448 -0.837 11.069 Atomic orbital electron populations 1.21713 0.95554 1.00409 1.01002 1.20991 0.94700 0.96040 0.97837 1.21588 1.00720 0.95588 1.00093 1.17329 0.94013 0.86724 0.93498 0.97634 1.22094 0.92213 1.52685 0.94199 0.93930 1.26799 1.09655 0.93578 0.92674 1.70856 1.09698 1.47525 1.29842 0.83146 0.71450 0.77468 0.75543 1.21769 1.19459 1.20797 1.20820 1.02393 1.00235 0.96100 1.23624 0.99712 0.90532 1.00717 1.77007 1.14996 1.23522 0.99956 1.48658 1.40151 1.09019 1.17338 1.23299 0.92732 0.90441 0.91385 1.23399 1.00512 0.99382 0.94530 1.22709 0.95575 0.98214 0.98833 1.23415 0.98348 1.01192 0.96385 1.22124 1.02821 0.86243 1.00928 0.94311 0.93696 0.91936 0.93165 0.93701 0.92114 0.94600 0.92878 0.80952 0.85355 0.90385 0.88036 0.86741 0.89733 0.89826 0.92469 0.82048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 8.96 71.98 0.65 -3.83 16 2 C -0.08 -3.11 2.40 -10.79 -0.03 -3.13 16 3 C -0.12 -4.64 8.82 71.98 0.63 -4.00 16 4 C 0.10 5.03 1.38 -12.28 -0.02 5.01 16 5 H 0.01 0.29 6.89 -2.39 -0.02 0.27 16 6 C -0.57 -30.97 6.97 25.60 0.18 -30.79 16 7 H 0.04 2.30 7.75 -2.91 -0.02 2.28 16 8 C -0.03 -1.61 5.45 84.66 0.46 -1.15 16 9 N -0.94 -56.41 13.63 21.45 0.29 -56.12 16 10 Si 1.10 51.04 29.91 68.60 2.05 53.09 16 11 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 13 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 14 C -0.18 -8.49 3.42 -20.14 -0.07 -8.56 16 15 C 0.04 1.74 11.51 85.24 0.98 2.72 16 16 N -0.33 -14.36 12.57 -57.02 -0.72 -15.07 16 17 N -0.37 -14.22 3.81 -324.99 -1.24 -15.46 16 18 C 0.12 3.47 5.02 45.52 0.23 3.69 16 19 C -0.14 -3.09 7.46 31.18 0.23 -2.86 16 20 C -0.12 -2.12 8.09 31.18 0.25 -1.87 16 21 C -0.15 -4.07 7.88 31.12 0.25 -3.83 16 22 C 0.02 0.98 10.39 83.54 0.87 1.84 16 23 H 0.04 1.39 7.25 -2.39 -0.02 1.37 16 24 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.05 2.05 8.00 -2.39 -0.02 2.03 16 27 H 0.04 1.82 7.34 -2.39 -0.02 1.80 16 28 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.26 15.52 6.46 -92.71 -0.60 14.92 16 31 H 0.17 7.28 8.06 -2.91 -0.02 7.26 16 32 H 0.13 3.17 8.14 -2.39 -0.02 3.15 16 33 H 0.08 2.00 6.32 -2.39 -0.02 1.99 16 34 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.16 6.45 6.70 -2.91 -0.02 6.43 16 Total: -1.00 -65.76 315.16 6.18 -59.58 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 1.18 Total: 20.75 kcal Atomic # 6 Polarization: -51.38 SS G_CDS: 4.62 Total: -46.76 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -1.66 Total: -86.66 kcal Atomic # 14 Polarization: 51.04 SS G_CDS: 2.05 Total: 53.09 kcal Total: -65.76 6.18 -59.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259773987.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.299 kcal (2) G-P(sol) polarization free energy of solvation -65.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds