Wall clock time and date at job start Mon Mar 30 2020 06:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47511 * 2 1 4 4 C 1.53005 * 109.46932 * 120.00287 * 2 1 3 5 5 H 1.08998 * 109.46609 * 297.97850 * 4 2 1 6 6 C 1.50703 * 109.47276 * 57.98207 * 4 2 1 7 7 H 1.07990 * 120.00022 * 27.27834 * 6 4 2 8 8 C 1.37877 * 119.99635 * 207.28435 * 6 4 2 9 9 N 1.31517 * 120.00044 * 5.67956 * 8 6 4 10 10 Si 1.86793 * 119.99656 * 185.68436 * 8 6 4 11 11 H 1.48499 * 109.47488 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47388 * 119.99849 * 10 8 6 13 13 H 1.48509 * 109.47298 * 239.99525 * 10 8 6 14 14 C 1.50699 * 109.46896 * 177.98440 * 4 2 1 15 15 C 1.34676 * 125.98612 * 274.71182 * 14 4 2 16 16 N 1.36879 * 106.81433 * 180.26346 * 15 14 4 17 17 C 1.46507 * 126.39324 * 179.97438 * 16 15 14 18 18 C 1.53778 * 113.61445 * 219.16727 * 17 16 15 19 19 C 1.53956 * 87.02036 * 220.05259 * 18 17 16 20 20 C 1.53780 * 87.11010 * 25.36428 * 19 18 17 21 21 C 1.35040 * 107.20766 * 0.02562 * 16 15 14 22 22 N 1.30495 * 108.70002 * 359.97438 * 21 16 15 23 23 H 1.08998 * 109.46657 * 294.43788 * 1 2 3 24 24 H 1.09001 * 109.46780 * 54.43403 * 1 2 3 25 25 H 1.09004 * 109.47278 * 174.43441 * 1 2 3 26 26 H 1.09002 * 109.47142 * 239.99486 * 2 1 3 27 27 H 1.08998 * 109.47310 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46909 * 300.00399 * 3 2 1 29 29 H 1.09002 * 109.47337 * 59.99606 * 3 2 1 30 30 H 0.96998 * 119.99507 * 180.02562 * 9 8 6 31 31 H 1.08005 * 126.59153 * 0.22613 * 15 14 4 32 32 H 1.08999 * 112.84782 * 350.36618 * 17 16 15 33 33 H 1.09009 * 113.61156 * 334.56866 * 18 17 16 34 34 H 1.09001 * 113.61695 * 105.47044 * 18 17 16 35 35 H 1.09002 * 113.53326 * 270.81207 * 19 18 17 36 36 H 1.09003 * 113.66710 * 139.93618 * 19 18 17 37 37 H 1.09004 * 113.61387 * 220.09358 * 20 19 18 38 38 H 1.08990 * 113.69183 * 89.20106 * 20 19 18 39 39 H 1.07997 * 125.64969 * 180.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7065 -0.1870 2.1388 6 6 1.4972 -2.1270 1.2745 7 1 1.2457 -2.6254 0.3501 8 6 1.3217 -2.7767 2.4779 9 7 1.5211 -2.1335 3.6076 10 14 0.8008 -4.5703 2.5036 11 1 0.6426 -5.0599 1.1106 12 1 1.8368 -5.3768 3.1974 13 1 -0.4917 -4.7002 3.2232 14 6 3.5462 -0.7648 1.2245 15 6 4.3010 -1.6900 0.6018 16 7 5.6080 -1.3584 0.8370 17 6 6.7883 -2.0808 0.3560 18 6 7.9260 -2.1585 1.3877 19 6 8.8960 -1.9159 0.2170 20 6 7.7292 -1.2203 -0.5037 21 6 5.6064 -0.2417 1.5963 22 7 4.3698 0.1077 1.8239 23 1 -0.3632 0.4252 0.9356 24 1 -0.3633 0.5977 -0.8360 25 1 -0.3634 -1.0228 -0.0997 26 1 1.8934 -0.5139 -0.8900 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.3980 -2.5907 4.4541 31 1 3.9438 -2.5322 0.0276 32 1 6.5415 -3.0420 -0.0951 33 1 7.9103 -1.3482 2.1167 34 1 8.0321 -3.1410 1.8476 35 1 9.2266 -2.8326 -0.2713 36 1 9.7195 -1.2454 0.4629 37 1 7.6767 -1.4465 -1.5687 38 1 7.6586 -0.1531 -0.2938 39 1 6.4832 0.2769 1.9550 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259780830.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:52 Heat of formation + Delta-G solvation = 64.683229 kcal Electronic energy + Delta-G solvation = -18531.474898 eV Core-core repulsion = 15861.288427 eV Total energy + Delta-G solvation = -2670.186472 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.24645 -38.39136 -35.62159 -32.19848 -31.59917 -29.05482 -26.64293 -25.99316 -25.79598 -24.82323 -22.99382 -20.94389 -20.02052 -18.88255 -18.06128 -17.06652 -16.20912 -15.44077 -14.59034 -14.32040 -13.69087 -13.57150 -13.35886 -13.00970 -12.65881 -12.53927 -12.46699 -12.03027 -11.67469 -11.47379 -11.22715 -11.02894 -10.88743 -10.66775 -10.64987 -10.56061 -10.21899 -10.03064 -9.71298 -9.15161 -8.98674 -8.75597 -8.45245 -8.30054 -7.08778 -5.90348 -3.93900 3.00486 3.32741 3.41468 3.43719 3.53800 4.35966 4.38711 4.47337 4.50874 4.69569 4.77919 5.29379 5.34520 5.45305 5.54874 5.59320 5.70094 5.78648 5.80644 5.92701 6.10772 6.16925 6.21197 6.24743 6.55708 6.72041 6.82786 6.88145 6.95519 7.02930 7.29165 7.29923 7.40627 7.53564 7.92882 7.95639 8.18041 8.22103 8.53419 9.16097 9.29837 9.69493 11.18432 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019058 B = 0.007809 C = 0.006201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.868251 B = 3584.593620 C = 4514.427250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.079 4.079 3 C -0.138 4.138 4 C 0.114 3.886 5 H 0.064 0.936 6 C -0.506 4.506 7 H 0.055 0.945 8 C 0.069 3.931 9 N -0.879 5.879 10 Si 0.880 3.120 11 H -0.273 1.273 12 H -0.287 1.287 13 H -0.285 1.285 14 C 0.070 3.930 15 C -0.065 4.065 16 N -0.460 5.460 17 C 0.115 3.885 18 C -0.147 4.147 19 C -0.139 4.139 20 C -0.147 4.147 21 C 0.148 3.852 22 N -0.491 5.491 23 H 0.047 0.953 24 H 0.026 0.974 25 H 0.059 0.941 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.030 0.970 29 H 0.047 0.953 30 H 0.258 0.742 31 H 0.162 0.838 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.557 0.712 -7.309 13.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.098 4.098 3 C -0.195 4.195 4 C 0.095 3.905 5 H 0.083 0.917 6 C -0.544 4.544 7 H 0.073 0.927 8 C -0.133 4.133 9 N -0.516 5.516 10 Si 0.709 3.291 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.211 1.211 14 C -0.059 4.059 15 C -0.194 4.194 16 N -0.146 5.146 17 C 0.010 3.990 18 C -0.185 4.185 19 C -0.176 4.176 20 C -0.185 4.185 21 C -0.132 4.132 22 N -0.210 5.210 23 H 0.066 0.934 24 H 0.045 0.955 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.179 0.821 32 H 0.132 0.868 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 11.387 1.298 -6.689 13.270 hybrid contribution 0.215 -1.938 -0.213 1.962 sum 11.602 -0.640 -6.902 13.515 Atomic orbital electron populations 1.21634 0.96124 1.01224 0.99323 1.21082 0.94994 0.94308 0.99449 1.21813 1.00839 0.97411 0.99467 1.17355 0.83302 0.95861 0.94009 0.91748 1.20983 1.42520 0.98758 0.92176 0.92684 1.24965 0.95097 0.97372 0.95911 1.69997 1.48849 1.35639 0.97147 0.86732 0.78111 0.86300 0.78006 1.19758 1.21338 1.21112 1.21718 0.97761 0.91028 0.95367 1.22386 0.81559 1.04829 1.10615 1.45322 1.05940 1.22530 1.40819 1.22835 0.83260 0.96437 0.96418 1.23410 0.94641 1.03310 0.97112 1.22739 0.96695 1.01023 0.97188 1.23406 0.95118 1.00309 0.99674 1.24453 0.97635 0.90418 1.00700 1.70248 0.99274 1.28849 1.22654 0.93418 0.95511 0.92184 0.93495 0.93152 0.95128 0.93366 0.93238 0.82065 0.86839 0.89152 0.90637 0.89836 0.90715 0.90809 0.89290 0.80086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.80 37.16 0.33 -2.24 16 2 C -0.08 -1.74 2.49 -90.62 -0.23 -1.96 16 3 C -0.14 -2.77 8.97 37.16 0.33 -2.44 16 4 C 0.11 2.93 1.87 -92.92 -0.17 2.76 16 5 H 0.06 1.90 7.46 -51.93 -0.39 1.52 16 6 C -0.51 -13.60 6.38 -34.44 -0.22 -13.82 16 7 H 0.05 1.45 7.73 -52.49 -0.41 1.05 16 8 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 9 N -0.88 -26.21 12.88 55.43 0.71 -25.50 16 10 Si 0.88 21.36 29.54 -169.99 -5.02 16.34 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 C 0.07 1.70 5.00 -82.85 -0.41 1.28 16 15 C -0.06 -1.42 10.76 -16.56 -0.18 -1.60 16 16 N -0.46 -8.32 2.94 -110.59 -0.33 -8.64 16 17 C 0.12 1.51 4.64 -67.11 -0.31 1.20 16 18 C -0.15 -1.61 7.66 -25.83 -0.20 -1.81 16 19 C -0.14 -1.19 8.09 -25.83 -0.21 -1.40 16 20 C -0.15 -1.53 7.76 -25.92 -0.20 -1.74 16 21 C 0.15 2.85 11.32 -90.38 -1.02 1.83 16 22 N -0.49 -11.61 10.82 -10.88 -0.12 -11.73 16 23 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 1.26 7.31 -51.93 -0.38 0.88 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 1.05 6.94 -51.93 -0.36 0.69 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.16 3.39 7.95 -52.48 -0.42 2.98 16 32 H 0.11 1.40 8.14 -51.93 -0.42 0.97 16 33 H 0.09 1.03 7.00 -51.92 -0.36 0.67 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.98 7.86 -51.93 -0.41 0.58 16 39 H 0.18 2.76 7.51 -52.49 -0.39 2.36 16 LS Contribution 316.16 15.07 4.76 4.76 Total: -1.00 -31.37 316.16 -9.05 -40.42 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.48 Total: 2.44 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -2.59 Total: -18.09 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.27 Total: -45.87 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.37 -9.05 -40.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259780830.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.102 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds