Wall clock time and date at job start Mon Mar 30 2020 06:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52990 * 109.47596 * 2 1 4 4 C 1.53002 * 109.46562 * 120.00263 * 2 1 3 5 5 H 1.09006 * 109.46753 * 180.32262 * 4 2 1 6 6 C 1.50697 * 109.47429 * 60.32559 * 4 2 1 7 7 H 1.07997 * 119.99580 * 245.43489 * 6 4 2 8 8 C 1.37877 * 120.00198 * 65.71381 * 6 4 2 9 9 N 1.31513 * 120.00013 * 8.86476 * 8 6 4 10 10 Si 1.86804 * 119.99949 * 188.87241 * 8 6 4 11 11 H 1.48500 * 109.46949 * 89.99736 * 10 8 6 12 12 H 1.48496 * 109.46761 * 209.99669 * 10 8 6 13 13 H 1.48494 * 109.47026 * 329.99612 * 10 8 6 14 14 C 1.50695 * 109.47187 * 300.31876 * 4 2 1 15 15 C 1.34675 * 125.98740 * 85.00219 * 14 4 2 16 16 N 1.36878 * 106.81760 * 179.97438 * 15 14 4 17 17 C 1.46498 * 126.39494 * 179.97438 * 16 15 14 18 18 C 1.53786 * 113.61757 * 219.13916 * 17 16 15 19 19 C 1.53953 * 87.02038 * 220.05279 * 18 17 16 20 20 C 1.53777 * 87.11375 * 25.36264 * 19 18 17 21 21 C 1.35038 * 107.20662 * 0.02562 * 16 15 14 22 22 N 1.30503 * 108.70074 * 359.75714 * 21 16 15 23 23 H 1.08999 * 109.46705 * 300.00425 * 1 2 3 24 24 H 1.09001 * 109.46572 * 60.00118 * 1 2 3 25 25 H 1.09000 * 109.47394 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46705 * 239.99575 * 2 1 3 27 27 H 1.08998 * 109.47469 * 174.42277 * 3 2 1 28 28 H 1.08998 * 109.47379 * 294.42900 * 3 2 1 29 29 H 1.09007 * 109.47412 * 54.42066 * 3 2 1 30 30 H 0.96997 * 120.00137 * 179.97438 * 9 8 6 31 31 H 1.07998 * 126.59008 * 359.94818 * 15 14 4 32 32 H 1.09003 * 112.85446 * 350.34498 * 17 16 15 33 33 H 1.09001 * 113.61427 * 334.57618 * 18 17 16 34 34 H 1.08999 * 113.60731 * 105.47342 * 18 17 16 35 35 H 1.09001 * 113.53691 * 270.80819 * 19 18 17 36 36 H 1.08999 * 113.66446 * 139.93528 * 19 18 17 37 37 H 1.08997 * 113.61453 * 220.08406 * 20 19 18 38 38 H 1.08999 * 113.69027 * 89.19642 * 20 19 18 39 39 H 1.08002 * 125.65060 * 179.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 3.1299 -0.7164 1.2522 6 6 1.5442 -2.1444 1.2452 7 1 0.8524 -2.4773 2.0048 8 6 1.9782 -3.0229 0.2752 9 7 2.9516 -2.6759 -0.5382 10 14 1.1836 -4.7061 0.1164 11 1 0.0358 -4.6249 -0.8224 12 1 2.1802 -5.6768 -0.4028 13 1 0.7032 -5.1543 1.4481 14 6 1.5311 -0.0156 2.4797 15 6 0.3355 -0.2125 3.0674 16 7 0.2821 0.6267 4.1475 17 6 -0.8318 0.7613 5.0894 18 6 -1.0961 2.2115 5.5278 19 6 -1.3441 1.6542 6.9413 20 6 -0.4429 0.4716 6.5488 21 6 1.4474 1.3081 4.1819 22 7 2.1914 0.9153 3.1842 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1255 1.4440 0.0999 28 1 1.7606 1.9266 -0.9356 29 1 1.5976 1.9843 0.8358 30 1 3.2572 -3.2940 -1.2204 31 1 -0.4336 -0.9000 2.7477 32 1 -1.7281 0.2335 4.7635 33 1 -0.2189 2.8550 5.4598 34 1 -1.9817 2.6516 5.0694 35 1 -2.3812 1.3716 7.1220 36 1 -0.9290 2.2748 7.7354 37 1 -0.8017 -0.4908 6.9136 38 1 0.6136 0.6371 6.7602 39 1 1.7202 2.0521 4.9157 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259780832.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:54 Heat of formation + Delta-G solvation = 66.950992 kcal Electronic energy + Delta-G solvation = -18619.894446 eV Core-core repulsion = 15949.806312 eV Total energy + Delta-G solvation = -2670.088134 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.48680 -38.53624 -35.67652 -32.00739 -31.69889 -29.15075 -26.58811 -26.05274 -25.89672 -25.00597 -23.01374 -21.14040 -20.06320 -19.28615 -17.89229 -17.01266 -16.01525 -15.45733 -14.71372 -14.50246 -13.77911 -13.64965 -13.45777 -12.94055 -12.77586 -12.63804 -12.30669 -12.14166 -11.99797 -11.45328 -11.09210 -11.03525 -10.86034 -10.77320 -10.70115 -10.63178 -10.02961 -9.77942 -9.62676 -9.33852 -9.03770 -8.81164 -8.57009 -8.21844 -7.29340 -5.93034 -3.92534 2.80285 3.34670 3.35985 3.42131 3.43749 4.14913 4.25541 4.37652 4.50980 4.59906 4.66388 5.17792 5.27435 5.40370 5.43779 5.48332 5.61559 5.65732 5.70856 5.79265 6.09764 6.27966 6.35134 6.45544 6.55305 6.66872 6.75741 6.91909 7.05359 7.08597 7.12739 7.52774 7.57252 7.74080 7.83979 7.95917 8.10836 8.17428 8.51578 9.02756 9.12973 9.68225 11.16476 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.025399 B = 0.006678 C = 0.005863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.146893 B = 4191.976169 C = 4774.919048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.078 4.078 3 C -0.135 4.135 4 C 0.125 3.875 5 H 0.044 0.956 6 C -0.503 4.503 7 H 0.055 0.945 8 C 0.065 3.935 9 N -0.886 5.886 10 Si 0.884 3.116 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.058 3.942 15 C -0.063 4.063 16 N -0.459 5.459 17 C 0.114 3.886 18 C -0.145 4.145 19 C -0.138 4.138 20 C -0.147 4.147 21 C 0.153 3.847 22 N -0.494 5.494 23 H 0.037 0.963 24 H 0.021 0.979 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.045 0.955 28 H 0.027 0.973 29 H 0.040 0.960 30 H 0.259 0.741 31 H 0.166 0.834 32 H 0.115 0.885 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.072 8.125 11.113 16.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.097 4.097 3 C -0.193 4.193 4 C 0.105 3.895 5 H 0.062 0.938 6 C -0.541 4.541 7 H 0.073 0.927 8 C -0.136 4.136 9 N -0.524 5.524 10 Si 0.712 3.288 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.201 1.201 14 C -0.070 4.070 15 C -0.192 4.192 16 N -0.145 5.145 17 C 0.009 3.991 18 C -0.184 4.184 19 C -0.176 4.176 20 C -0.186 4.186 21 C -0.127 4.127 22 N -0.213 5.213 23 H 0.056 0.944 24 H 0.040 0.960 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.064 0.936 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.183 0.817 32 H 0.133 0.867 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -8.275 8.346 10.861 16.003 hybrid contribution -1.290 -1.271 0.125 1.815 sum -9.566 7.075 10.986 16.194 Atomic orbital electron populations 1.21761 0.97616 1.01075 0.98242 1.21000 0.93919 0.93176 1.01603 1.21808 1.00560 0.98252 0.98644 1.17229 0.96766 0.91381 0.84123 0.93774 1.21080 1.26668 0.94432 1.11969 0.92676 1.24899 0.94643 0.97802 0.96303 1.69967 1.26004 1.36304 1.20162 0.86730 0.79312 0.84589 0.78204 1.20715 1.21407 1.20113 1.21473 0.91024 0.95634 0.98832 1.22515 1.03030 1.01596 0.92039 1.45379 1.14416 1.32103 1.22567 1.22895 0.89802 0.98135 0.88261 1.23407 1.02880 0.95775 0.96301 1.22739 1.00240 0.97792 0.96871 1.23411 1.01094 0.99384 0.94686 1.24510 0.84218 1.02310 1.01698 1.70260 1.31069 1.14197 1.05777 0.94359 0.95955 0.92236 0.89973 0.93599 0.95416 0.94106 0.93073 0.81653 0.86674 0.89154 0.90591 0.89764 0.90634 0.90648 0.89211 0.79729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 8.47 37.16 0.31 -2.47 16 2 C -0.08 -1.86 2.60 -90.62 -0.24 -2.09 16 3 C -0.14 -2.94 8.84 37.15 0.33 -2.61 16 4 C 0.12 3.22 1.94 -92.93 -0.18 3.04 16 5 H 0.04 1.31 8.09 -51.93 -0.42 0.89 16 6 C -0.50 -13.62 6.97 -34.44 -0.24 -13.86 16 7 H 0.06 1.47 6.70 -52.49 -0.35 1.12 16 8 C 0.07 1.79 5.21 -17.82 -0.09 1.70 16 9 N -0.89 -25.55 12.15 55.43 0.67 -24.88 16 10 Si 0.88 21.19 29.55 -169.99 -5.02 16.17 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.06 1.34 4.42 -82.85 -0.37 0.98 16 15 C -0.06 -1.26 8.58 -16.56 -0.14 -1.40 16 16 N -0.46 -7.52 2.94 -110.59 -0.33 -7.84 16 17 C 0.11 1.33 4.63 -67.11 -0.31 1.02 16 18 C -0.15 -1.33 7.66 -25.83 -0.20 -1.53 16 19 C -0.14 -1.04 8.09 -25.83 -0.21 -1.25 16 20 C -0.15 -1.44 7.76 -25.92 -0.20 -1.64 16 21 C 0.15 2.67 11.32 -90.38 -1.02 1.65 16 22 N -0.49 -10.87 11.01 -10.87 -0.12 -10.99 16 23 H 0.04 0.78 6.05 -51.93 -0.31 0.47 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.06 1.33 7.23 -51.93 -0.38 0.96 16 26 H 0.08 2.19 6.89 -51.93 -0.36 1.83 16 27 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.04 0.88 7.23 -51.93 -0.38 0.50 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.17 3.24 7.56 -52.49 -0.40 2.84 16 32 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.09 0.85 7.00 -51.93 -0.36 0.49 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.95 7.86 -51.93 -0.41 0.54 16 39 H 0.19 2.48 7.51 -52.49 -0.39 2.09 16 LS Contribution 309.02 15.07 4.66 4.66 Total: -1.00 -30.55 309.02 -8.97 -39.52 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.27 Total: 1.85 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -2.56 Total: -18.48 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.23 Total: -43.71 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.55 -8.97 -39.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259780832.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.469 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds