Wall clock time and date at job start Mon Mar 30 2020 06:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52990 * 109.47596 * 2 1 4 4 C 1.53002 * 109.46562 * 120.00263 * 2 1 3 5 5 H 1.09006 * 109.46753 * 180.32262 * 4 2 1 6 6 C 1.50697 * 109.47429 * 60.32559 * 4 2 1 7 7 H 1.07997 * 119.99580 * 245.43489 * 6 4 2 8 8 C 1.37877 * 120.00198 * 65.71381 * 6 4 2 9 9 N 1.31513 * 120.00013 * 8.86476 * 8 6 4 10 10 Si 1.86804 * 119.99949 * 188.87241 * 8 6 4 11 11 H 1.48500 * 109.46949 * 89.99736 * 10 8 6 12 12 H 1.48496 * 109.46761 * 209.99669 * 10 8 6 13 13 H 1.48494 * 109.47026 * 329.99612 * 10 8 6 14 14 C 1.50695 * 109.47187 * 300.31876 * 4 2 1 15 15 C 1.34675 * 125.98740 * 85.00219 * 14 4 2 16 16 N 1.36878 * 106.81760 * 179.97438 * 15 14 4 17 17 C 1.46498 * 126.39494 * 179.97438 * 16 15 14 18 18 C 1.53786 * 113.61757 * 219.13916 * 17 16 15 19 19 C 1.53953 * 87.02038 * 220.05279 * 18 17 16 20 20 C 1.53777 * 87.11375 * 25.36264 * 19 18 17 21 21 C 1.35038 * 107.20662 * 0.02562 * 16 15 14 22 22 N 1.30503 * 108.70074 * 359.75714 * 21 16 15 23 23 H 1.08999 * 109.46705 * 300.00425 * 1 2 3 24 24 H 1.09001 * 109.46572 * 60.00118 * 1 2 3 25 25 H 1.09000 * 109.47394 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46705 * 239.99575 * 2 1 3 27 27 H 1.08998 * 109.47469 * 174.42277 * 3 2 1 28 28 H 1.08998 * 109.47379 * 294.42900 * 3 2 1 29 29 H 1.09007 * 109.47412 * 54.42066 * 3 2 1 30 30 H 0.96997 * 120.00137 * 179.97438 * 9 8 6 31 31 H 1.07998 * 126.59008 * 359.94818 * 15 14 4 32 32 H 1.09003 * 112.85446 * 350.34498 * 17 16 15 33 33 H 1.09001 * 113.61427 * 334.57618 * 18 17 16 34 34 H 1.08999 * 113.60731 * 105.47342 * 18 17 16 35 35 H 1.09001 * 113.53691 * 270.80819 * 19 18 17 36 36 H 1.08999 * 113.66446 * 139.93528 * 19 18 17 37 37 H 1.08997 * 113.61453 * 220.08406 * 20 19 18 38 38 H 1.08999 * 113.69027 * 89.19642 * 20 19 18 39 39 H 1.08002 * 125.65060 * 179.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 3.1299 -0.7164 1.2522 6 6 1.5442 -2.1444 1.2452 7 1 0.8524 -2.4773 2.0048 8 6 1.9782 -3.0229 0.2752 9 7 2.9516 -2.6759 -0.5382 10 14 1.1836 -4.7061 0.1164 11 1 0.0358 -4.6249 -0.8224 12 1 2.1802 -5.6768 -0.4028 13 1 0.7032 -5.1543 1.4481 14 6 1.5311 -0.0156 2.4797 15 6 0.3355 -0.2125 3.0674 16 7 0.2821 0.6267 4.1475 17 6 -0.8318 0.7613 5.0894 18 6 -1.0961 2.2115 5.5278 19 6 -1.3441 1.6542 6.9413 20 6 -0.4429 0.4716 6.5488 21 6 1.4474 1.3081 4.1819 22 7 2.1914 0.9153 3.1842 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1255 1.4440 0.0999 28 1 1.7606 1.9266 -0.9356 29 1 1.5976 1.9843 0.8358 30 1 3.2572 -3.2940 -1.2204 31 1 -0.4336 -0.9000 2.7477 32 1 -1.7281 0.2335 4.7635 33 1 -0.2189 2.8550 5.4598 34 1 -1.9817 2.6516 5.0694 35 1 -2.3812 1.3716 7.1220 36 1 -0.9290 2.2748 7.7354 37 1 -0.8017 -0.4908 6.9136 38 1 0.6136 0.6371 6.7602 39 1 1.7202 2.0521 4.9157 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259780832.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:54 Heat of formation + Delta-G solvation = 51.041018 kcal Electronic energy + Delta-G solvation = -18620.584354 eV Core-core repulsion = 15949.806312 eV Total energy + Delta-G solvation = -2670.778042 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.90634 -39.47083 -37.50574 -34.03644 -33.10886 -30.88715 -28.34292 -27.80586 -26.63044 -26.14781 -24.90551 -22.32335 -21.67966 -20.63107 -19.30433 -18.31270 -17.93466 -16.62331 -16.22283 -16.14860 -15.28234 -15.11412 -14.83980 -14.56147 -14.22697 -14.00526 -13.70164 -13.47526 -13.15203 -13.09844 -12.81076 -12.76082 -12.53659 -12.14951 -11.90717 -11.72755 -11.61733 -11.44463 -11.41512 -11.15026 -10.85986 -10.55730 -10.30760 -10.08528 -8.89435 -8.04284 -6.10727 1.38106 1.44070 1.44676 1.53854 2.12981 2.44743 2.56548 3.27049 3.48993 3.62585 3.83132 3.90692 3.96451 4.19737 4.47409 4.50586 4.56192 4.62145 4.74240 4.75043 4.88419 4.95056 4.99132 5.00977 5.08362 5.11992 5.17990 5.20238 5.31099 5.39217 5.58954 5.66515 5.72970 5.80120 5.91125 6.06485 6.25754 6.41371 6.68901 6.96285 7.52057 7.54402 9.05253 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.025399 B = 0.006678 C = 0.005863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.146893 B = 4191.976169 C = 4774.919048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.077 4.077 3 C -0.121 4.121 4 C 0.129 3.871 5 H -0.014 1.014 6 C -0.508 4.508 7 H 0.056 0.944 8 C 0.015 3.985 9 N -0.921 5.921 10 Si 0.948 3.052 11 H -0.271 1.271 12 H -0.290 1.290 13 H -0.269 1.269 14 C 0.025 3.975 15 C -0.059 4.059 16 N -0.448 5.448 17 C 0.092 3.908 18 C -0.140 4.140 19 C -0.120 4.120 20 C -0.147 4.147 21 C 0.171 3.829 22 N -0.541 5.541 23 H 0.048 0.952 24 H 0.042 0.958 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.027 0.973 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.259 0.741 31 H 0.168 0.832 32 H 0.125 0.875 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.581 9.006 13.024 19.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.096 4.096 3 C -0.178 4.178 4 C 0.109 3.891 5 H 0.004 0.996 6 C -0.547 4.547 7 H 0.074 0.926 8 C -0.183 4.183 9 N -0.561 5.561 10 Si 0.774 3.226 11 H -0.197 1.197 12 H -0.216 1.216 13 H -0.193 1.193 14 C -0.103 4.103 15 C -0.190 4.190 16 N -0.131 5.131 17 C -0.010 4.010 18 C -0.178 4.178 19 C -0.158 4.158 20 C -0.186 4.186 21 C -0.110 4.110 22 N -0.261 5.261 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.186 0.814 32 H 0.143 0.857 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -10.823 9.235 12.805 19.142 hybrid contribution -0.490 -1.492 -0.367 1.613 sum -11.314 7.744 12.438 18.511 Atomic orbital electron populations 1.21598 0.95371 1.00662 0.99693 1.20880 0.95755 0.93807 0.99201 1.21639 0.99266 0.97059 0.99876 1.16976 0.93245 0.91960 0.86897 0.99564 1.21340 1.26259 0.95336 1.11746 0.92572 1.25670 0.95030 1.01547 0.96050 1.70120 1.27429 1.37627 1.20887 0.85712 0.78427 0.80017 0.78478 1.19683 1.21566 1.19314 1.21037 0.92706 0.97423 0.99138 1.22370 1.01900 1.01905 0.92869 1.45583 1.15291 1.30354 1.21885 1.23513 0.88676 1.00774 0.88034 1.23417 1.03317 0.93876 0.97154 1.22699 1.00653 0.96213 0.96196 1.23424 1.01286 1.00777 0.93090 1.25160 0.83657 1.01607 1.00598 1.70150 1.32944 1.15318 1.07715 0.93340 0.93869 0.93557 0.93429 0.95411 0.93099 0.93805 0.93221 0.81442 0.85743 0.89160 0.89614 0.88179 0.89140 0.90356 0.89964 0.75710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.95 8.47 71.98 0.61 -4.34 16 2 C -0.08 -3.80 2.60 -10.79 -0.03 -3.83 16 3 C -0.12 -5.35 8.84 71.98 0.64 -4.72 16 4 C 0.13 6.98 1.94 -12.29 -0.02 6.96 16 5 H -0.01 -0.89 8.09 -2.38 -0.02 -0.91 16 6 C -0.51 -28.37 6.97 25.60 0.18 -28.19 16 7 H 0.06 3.05 6.70 -2.91 -0.02 3.03 16 8 C 0.02 0.87 5.21 84.65 0.44 1.31 16 9 N -0.92 -55.38 12.15 21.45 0.26 -55.12 16 10 Si 0.95 44.13 29.55 68.60 2.03 46.16 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 13 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 14 C 0.02 1.15 4.42 41.39 0.18 1.34 16 15 C -0.06 -2.34 8.58 83.09 0.71 -1.62 16 16 N -0.45 -13.81 2.94 -503.78 -1.48 -15.29 16 17 C 0.09 1.88 4.63 45.52 0.21 2.09 16 18 C -0.14 -2.02 7.66 31.18 0.24 -1.78 16 19 C -0.12 -1.29 8.09 31.18 0.25 -1.04 16 20 C -0.15 -2.42 7.76 31.12 0.24 -2.17 16 21 C 0.17 5.69 11.32 180.26 2.04 7.73 16 22 N -0.54 -23.98 11.01 -188.32 -2.07 -26.06 16 23 H 0.05 1.94 6.05 -2.39 -0.01 1.93 16 24 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.05 2.06 7.23 -2.39 -0.02 2.05 16 26 H 0.05 2.65 6.89 -2.39 -0.02 2.64 16 27 H 0.03 1.27 8.14 -2.39 -0.02 1.26 16 28 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.04 1.89 7.23 -2.38 -0.02 1.87 16 30 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 31 H 0.17 6.46 7.56 -2.91 -0.02 6.44 16 32 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.09 1.34 7.00 -2.39 -0.02 1.32 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.50 7.86 -2.39 -0.02 1.48 16 39 H 0.23 5.32 7.51 -2.91 -0.02 5.29 16 Total: -1.00 -69.44 309.02 5.44 -64.00 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 1.01 Total: 14.57 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: 5.69 Total: -28.26 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -3.30 Total: -96.46 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -69.44 5.44 -64.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259780832.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.044 kcal (2) G-P(sol) polarization free energy of solvation -69.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds