Wall clock time and date at job start Mon Mar 30 2020 06:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47260 * 2 1 4 4 C 1.50697 * 109.46898 * 119.99870 * 2 1 3 5 5 N 1.30789 * 125.72750 * 300.31501 * 4 2 1 6 6 C 1.34420 * 109.32556 * 180.17569 * 5 4 2 7 7 C 1.33861 * 107.79432 * 359.60795 * 6 5 4 8 8 N 1.34410 * 125.72234 * 119.99985 * 4 2 1 9 9 C 1.46473 * 128.44685 * 359.83039 * 8 4 2 10 10 C 1.53285 * 108.69583 * 197.38189 * 9 8 4 11 11 C 1.53120 * 109.70943 * 309.23665 * 10 9 8 12 12 H 1.08993 * 109.49509 * 309.95521 * 11 10 9 13 13 C 1.52996 * 109.49814 * 189.85265 * 11 10 9 14 14 C 1.50697 * 109.47069 * 175.16231 * 13 11 10 15 15 H 1.08004 * 119.99931 * 0.02562 * 14 13 11 16 16 C 1.37874 * 119.99908 * 179.97438 * 14 13 11 17 17 N 1.31511 * 120.00363 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99947 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47043 * 60.00527 * 18 16 14 20 20 H 1.48499 * 109.47220 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47262 * 300.00695 * 18 16 14 22 22 C 1.50717 * 128.67869 * 180.17399 * 7 6 5 23 23 H 1.09000 * 109.46676 * 60.00280 * 1 2 3 24 24 H 1.08997 * 109.47216 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47381 * 300.00211 * 1 2 3 26 26 H 1.09000 * 109.46929 * 239.99505 * 2 1 3 27 27 H 1.08997 * 109.47092 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.47249 * 299.99875 * 3 2 1 29 29 H 1.09000 * 109.47554 * 59.99888 * 3 2 1 30 30 H 1.08002 * 126.10502 * 179.88216 * 6 5 4 31 31 H 1.09000 * 109.59716 * 77.62715 * 9 8 4 32 32 H 1.08995 * 109.73176 * 317.22875 * 9 8 4 33 33 H 1.08994 * 109.43757 * 189.15910 * 10 9 8 34 34 H 1.09001 * 109.39061 * 69.28147 * 10 9 8 35 35 H 1.08997 * 109.47470 * 295.16858 * 13 11 10 36 36 H 1.09001 * 109.46939 * 55.16617 * 13 11 10 37 37 H 0.97000 * 120.00290 * 179.97438 * 17 16 14 38 38 H 1.08998 * 109.74373 * 315.37532 * 22 7 6 39 39 H 1.09003 * 109.74392 * 76.04543 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7816 -0.3659 2.4670 6 6 2.3951 -1.2233 3.3008 7 6 3.0377 -2.1302 2.5548 8 7 2.8083 -1.8078 1.2413 9 6 3.3366 -2.5609 0.1015 10 6 3.7843 -3.9429 0.5907 11 6 4.6983 -3.7882 1.8093 12 1 5.4792 -3.0606 1.5883 13 6 5.3367 -5.1379 2.1435 14 6 6.3257 -4.9614 3.2667 15 1 6.4829 -3.9843 3.6993 16 6 7.0291 -6.0474 3.7429 17 7 6.8373 -7.2373 3.2165 18 14 8.2545 -5.8288 5.1357 19 1 7.5531 -5.3023 6.3342 20 1 8.8742 -7.1388 5.4600 21 1 9.3108 -4.8714 4.7200 22 6 3.8698 -3.3028 3.0068 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 2.3701 -1.1895 4.3800 31 1 4.1883 -2.0302 -0.3242 32 1 2.5610 -2.6746 -0.6558 33 1 4.3258 -4.4520 -0.2065 34 1 2.9085 -4.5303 0.8665 35 1 4.5616 -5.8407 2.4489 36 1 5.8512 -5.5242 1.2637 37 1 7.3324 -8.0013 3.5513 38 1 4.5345 -2.9935 3.8133 39 1 3.2181 -4.1047 3.3539 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259789529.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:26 Heat of formation + Delta-G solvation = 24.240968 kcal Electronic energy + Delta-G solvation = -18234.582601 eV Core-core repulsion = 15562.642422 eV Total energy + Delta-G solvation = -2671.940180 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.06540 -36.92292 -35.26382 -33.58981 -32.10937 -30.02205 -28.58141 -27.21931 -26.03234 -24.26081 -22.65104 -22.52813 -20.07265 -19.44882 -18.41656 -16.80329 -16.27711 -15.55855 -14.59036 -14.43479 -14.24383 -14.00001 -13.65663 -13.27884 -13.06478 -12.96955 -12.79052 -12.24092 -12.03364 -11.69537 -11.58069 -11.31215 -11.21096 -11.08577 -11.03255 -10.78675 -10.50515 -10.42930 -10.01025 -9.58363 -9.23666 -9.16110 -9.07478 -8.39968 -7.80317 -6.04830 -4.07324 2.40426 3.07419 3.31125 3.35874 3.38419 3.45035 4.42030 4.45074 4.72783 4.85552 4.97589 5.09294 5.16157 5.26557 5.28384 5.32664 5.55608 5.55894 5.64360 5.76373 5.78883 5.79379 5.88245 6.03627 6.05917 6.17120 6.20488 6.24210 6.38127 6.64543 6.82037 6.88356 6.93864 7.15932 7.55817 7.57341 7.70056 7.93198 8.35122 8.42455 8.98452 9.57353 11.06324 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.041829 B = 0.004851 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.227448 B = 5770.692501 C = 6085.418286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.004 4.004 3 C -0.138 4.138 4 C 0.195 3.805 5 N -0.491 5.491 6 C -0.043 4.043 7 C -0.002 4.002 8 N -0.449 5.449 9 C 0.103 3.897 10 C -0.129 4.129 11 C -0.084 4.084 12 H 0.061 0.939 13 C 0.030 3.970 14 C -0.520 4.520 15 H 0.056 0.944 16 C 0.059 3.941 17 N -0.896 5.896 18 Si 0.890 3.110 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.033 4.033 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.166 0.834 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.261 0.739 38 H 0.090 0.910 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.563 11.370 -7.813 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.024 4.024 3 C -0.196 4.196 4 C -0.067 4.067 5 N -0.210 5.210 6 C -0.189 4.189 7 C -0.117 4.117 8 N -0.133 5.133 9 C -0.019 4.019 10 C -0.167 4.167 11 C -0.103 4.103 12 H 0.079 0.921 13 C -0.007 4.007 14 C -0.558 4.558 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.535 5.535 18 Si 0.718 3.282 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.071 4.071 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.183 0.817 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.037 0.963 36 H 0.036 0.964 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.937 11.776 -7.688 17.220 hybrid contribution 1.292 -0.776 0.559 1.608 sum -8.645 10.999 -7.129 15.701 Atomic orbital electron populations 1.21762 0.93424 1.02007 1.02394 1.19442 0.96362 0.95573 0.91062 1.21759 1.00992 0.94463 1.02377 1.22844 0.98448 0.89836 0.95530 1.70272 1.24126 1.27774 0.98842 1.21755 1.02711 0.95255 0.99223 1.21673 1.05018 1.01915 0.83094 1.45276 1.38494 1.22385 1.07121 1.22012 0.98947 0.93882 0.87060 1.22021 1.00881 0.93511 1.00300 1.21343 0.95589 1.01535 0.91790 0.92089 1.19127 0.95284 0.89562 0.96727 1.21174 1.22396 0.94308 1.17909 0.92584 1.24998 0.97077 0.95291 0.96891 1.69942 1.42048 0.99302 1.42181 0.86688 0.81555 0.77231 0.82737 1.20135 1.21325 1.20283 1.20303 0.96019 0.91866 0.98954 0.92204 0.92887 0.91397 0.90526 0.92834 0.92201 0.91410 0.81716 0.90250 0.90037 0.89846 0.91413 0.96329 0.96416 0.92919 0.89174 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.18 37.16 0.34 -1.07 16 2 C 0.00 -0.05 3.29 -91.78 -0.30 -0.35 16 3 C -0.14 -1.43 9.17 37.15 0.34 -1.09 16 4 C 0.20 3.01 6.45 -155.75 -1.00 2.01 16 5 N -0.49 -8.55 11.27 -11.02 -0.12 -8.67 16 6 C -0.04 -0.75 11.84 -17.96 -0.21 -0.96 16 7 C 0.00 -0.04 6.57 -81.72 -0.54 -0.58 16 8 N -0.45 -7.15 3.13 -109.43 -0.34 -7.49 16 9 C 0.10 1.38 6.42 -3.91 -0.03 1.35 16 10 C -0.13 -2.01 5.22 -26.52 -0.14 -2.15 16 11 C -0.08 -1.61 2.16 -90.30 -0.19 -1.80 16 12 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 13 C 0.03 0.72 4.43 -27.89 -0.12 0.60 16 14 C -0.52 -13.94 8.55 -34.44 -0.29 -14.24 16 15 H 0.06 1.47 7.12 -52.48 -0.37 1.09 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -26.14 13.29 55.43 0.74 -25.40 16 18 Si 0.89 21.20 29.54 -169.99 -5.02 16.17 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C -0.03 -0.62 5.22 -27.62 -0.14 -0.76 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.08 0.76 7.28 -51.93 -0.38 0.38 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.17 2.54 8.06 -52.49 -0.42 2.12 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 0.88 7.83 -51.93 -0.41 0.48 16 33 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 34 H 0.07 1.07 8.11 -51.93 -0.42 0.65 16 35 H 0.02 0.48 8.12 -51.93 -0.42 0.05 16 36 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.09 1.74 7.37 -51.93 -0.38 1.35 16 39 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 LS Contribution 314.12 15.07 4.73 4.73 Total: -1.00 -30.38 314.12 -9.00 -39.38 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.59 Total: -1.22 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -2.39 Total: -17.50 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.27 Total: -41.56 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.38 -9.00 -39.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259789529.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.620 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds