Wall clock time and date at job start Mon Mar 30 2020 06:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47260 * 2 1 4 4 C 1.50697 * 109.46898 * 119.99870 * 2 1 3 5 5 N 1.30789 * 125.72750 * 300.31501 * 4 2 1 6 6 C 1.34420 * 109.32556 * 180.17569 * 5 4 2 7 7 C 1.33861 * 107.79432 * 359.60795 * 6 5 4 8 8 N 1.34410 * 125.72234 * 119.99985 * 4 2 1 9 9 C 1.46473 * 128.44685 * 359.83039 * 8 4 2 10 10 C 1.53285 * 108.69583 * 197.38189 * 9 8 4 11 11 C 1.53120 * 109.70943 * 309.23665 * 10 9 8 12 12 H 1.08993 * 109.49509 * 309.95521 * 11 10 9 13 13 C 1.52996 * 109.49814 * 189.85265 * 11 10 9 14 14 C 1.50697 * 109.47069 * 175.16231 * 13 11 10 15 15 H 1.08004 * 119.99931 * 0.02562 * 14 13 11 16 16 C 1.37874 * 119.99908 * 179.97438 * 14 13 11 17 17 N 1.31511 * 120.00363 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99947 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47043 * 60.00527 * 18 16 14 20 20 H 1.48499 * 109.47220 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47262 * 300.00695 * 18 16 14 22 22 C 1.50717 * 128.67869 * 180.17399 * 7 6 5 23 23 H 1.09000 * 109.46676 * 60.00280 * 1 2 3 24 24 H 1.08997 * 109.47216 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47381 * 300.00211 * 1 2 3 26 26 H 1.09000 * 109.46929 * 239.99505 * 2 1 3 27 27 H 1.08997 * 109.47092 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.47249 * 299.99875 * 3 2 1 29 29 H 1.09000 * 109.47554 * 59.99888 * 3 2 1 30 30 H 1.08002 * 126.10502 * 179.88216 * 6 5 4 31 31 H 1.09000 * 109.59716 * 77.62715 * 9 8 4 32 32 H 1.08995 * 109.73176 * 317.22875 * 9 8 4 33 33 H 1.08994 * 109.43757 * 189.15910 * 10 9 8 34 34 H 1.09001 * 109.39061 * 69.28147 * 10 9 8 35 35 H 1.08997 * 109.47470 * 295.16858 * 13 11 10 36 36 H 1.09001 * 109.46939 * 55.16617 * 13 11 10 37 37 H 0.97000 * 120.00290 * 179.97438 * 17 16 14 38 38 H 1.08998 * 109.74373 * 315.37532 * 22 7 6 39 39 H 1.09003 * 109.74392 * 76.04543 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7816 -0.3659 2.4670 6 6 2.3951 -1.2233 3.3008 7 6 3.0377 -2.1302 2.5548 8 7 2.8083 -1.8078 1.2413 9 6 3.3366 -2.5609 0.1015 10 6 3.7843 -3.9429 0.5907 11 6 4.6983 -3.7882 1.8093 12 1 5.4792 -3.0606 1.5883 13 6 5.3367 -5.1379 2.1435 14 6 6.3257 -4.9614 3.2667 15 1 6.4829 -3.9843 3.6993 16 6 7.0291 -6.0474 3.7429 17 7 6.8373 -7.2373 3.2165 18 14 8.2545 -5.8288 5.1357 19 1 7.5531 -5.3023 6.3342 20 1 8.8742 -7.1388 5.4600 21 1 9.3108 -4.8714 4.7200 22 6 3.8698 -3.3028 3.0068 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 2.3701 -1.1895 4.3800 31 1 4.1883 -2.0302 -0.3242 32 1 2.5610 -2.6746 -0.6558 33 1 4.3258 -4.4520 -0.2065 34 1 2.9085 -4.5303 0.8665 35 1 4.5616 -5.8407 2.4489 36 1 5.8512 -5.5242 1.2637 37 1 7.3324 -8.0013 3.5513 38 1 4.5345 -2.9935 3.8133 39 1 3.2181 -4.1047 3.3539 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259789529.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:26 Heat of formation + Delta-G solvation = 8.334253 kcal Electronic energy + Delta-G solvation = -18235.272368 eV Core-core repulsion = 15562.642422 eV Total energy + Delta-G solvation = -2672.629947 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.31521 -38.35637 -36.21199 -35.28469 -33.83334 -31.36407 -30.18147 -28.00015 -27.60922 -25.79575 -24.11122 -23.72270 -21.63579 -20.60386 -19.73158 -18.48842 -17.79671 -16.81690 -16.49707 -15.61413 -15.37917 -15.23550 -15.01561 -14.59633 -14.42504 -14.19053 -13.97776 -13.74606 -13.31129 -13.10913 -13.00897 -12.75010 -12.50392 -12.43122 -12.26988 -12.08922 -12.03272 -11.86760 -11.59701 -11.23447 -10.96862 -10.79976 -10.52318 -10.38321 -9.11059 -8.18362 -6.27371 1.14443 1.41087 1.42377 1.50116 1.90370 2.16906 2.41704 3.15717 3.43871 3.60892 3.75763 3.81460 4.00089 4.05338 4.23539 4.30693 4.33292 4.43634 4.54801 4.62536 4.75760 4.85237 4.87096 4.88240 4.98903 5.02549 5.07325 5.15040 5.22488 5.25077 5.38195 5.39219 5.49626 5.56223 5.70409 5.85270 5.86852 6.26497 6.39011 6.87831 7.16694 7.41468 8.92981 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.041829 B = 0.004851 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.227448 B = 5770.692501 C = 6085.418286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.007 4.007 3 C -0.134 4.134 4 C 0.205 3.795 5 N -0.519 5.519 6 C -0.053 4.053 7 C -0.022 4.022 8 N -0.453 5.453 9 C 0.104 3.896 10 C -0.123 4.123 11 C -0.075 4.075 12 H 0.054 0.946 13 C 0.037 3.963 14 C -0.533 4.533 15 H 0.058 0.942 16 C 0.004 3.996 17 N -0.932 5.932 18 Si 0.955 3.045 19 H -0.268 1.268 20 H -0.285 1.285 21 H -0.270 1.270 22 C -0.023 4.023 23 H 0.089 0.911 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.101 0.899 27 H 0.045 0.955 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.174 0.826 31 H 0.096 0.904 32 H 0.118 0.882 33 H 0.095 0.905 34 H 0.063 0.937 35 H -0.006 1.006 36 H -0.003 1.003 37 H 0.262 0.738 38 H 0.075 0.925 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.993 12.886 -9.233 18.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.028 4.028 3 C -0.192 4.192 4 C -0.058 4.058 5 N -0.238 5.238 6 C -0.199 4.199 7 C -0.137 4.137 8 N -0.136 5.136 9 C -0.017 4.017 10 C -0.161 4.161 11 C -0.094 4.094 12 H 0.073 0.927 13 C 0.000 4.000 14 C -0.571 4.571 15 H 0.076 0.924 16 C -0.194 4.194 17 N -0.573 5.573 18 Si 0.780 3.220 19 H -0.193 1.193 20 H -0.210 1.210 21 H -0.195 1.195 22 C -0.062 4.062 23 H 0.108 0.892 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.120 0.880 27 H 0.064 0.936 28 H 0.108 0.892 29 H 0.069 0.931 30 H 0.191 0.809 31 H 0.114 0.886 32 H 0.136 0.864 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.013 0.987 36 H 0.015 0.985 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.366 13.299 -9.113 19.167 hybrid contribution 1.393 -1.231 0.970 2.097 sum -8.972 12.068 -8.143 17.101 Atomic orbital electron populations 1.21733 0.92424 1.01890 1.03070 1.19744 0.97128 0.95924 0.89958 1.21732 1.00495 0.93858 1.03077 1.23705 0.96710 0.89050 0.96301 1.70296 1.25221 1.28427 0.99872 1.22025 1.02605 0.95296 0.99993 1.21431 1.05994 1.01952 0.84345 1.45468 1.38469 1.22714 1.06991 1.22192 1.00736 0.91975 0.86748 1.21905 0.99904 0.95467 0.98825 1.21138 0.96099 0.98204 0.93945 0.92737 1.18988 0.94191 0.91773 0.95086 1.21592 1.22659 0.94384 1.18439 0.92351 1.25845 0.99056 0.95023 0.99426 1.70065 1.43315 1.00093 1.43795 0.85655 0.79280 0.77296 0.79775 1.19348 1.21038 1.19461 1.20053 0.95653 0.92194 0.98264 0.89214 0.93394 0.93061 0.88038 0.93556 0.89187 0.93053 0.80922 0.88631 0.86398 0.88685 0.91830 0.98726 0.98495 0.92893 0.90644 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 9.18 71.98 0.66 -1.66 16 2 C -0.01 -0.14 3.29 -11.54 -0.04 -0.18 16 3 C -0.13 -2.38 9.17 71.98 0.66 -1.72 16 4 C 0.20 5.91 6.45 138.24 0.89 6.80 16 5 N -0.52 -17.64 11.27 -188.78 -2.13 -19.77 16 6 C -0.05 -1.84 11.84 83.30 0.99 -0.85 16 7 C -0.02 -0.77 6.57 40.73 0.27 -0.51 16 8 N -0.45 -13.58 3.13 -500.12 -1.57 -15.15 16 9 C 0.10 2.48 6.42 86.48 0.56 3.03 16 10 C -0.12 -3.67 5.22 30.73 0.16 -3.51 16 11 C -0.08 -2.90 2.16 -10.59 -0.02 -2.92 16 12 H 0.05 2.17 8.12 -2.39 -0.02 2.15 16 13 C 0.04 1.82 4.43 29.85 0.13 1.95 16 14 C -0.53 -29.12 8.55 25.60 0.22 -28.90 16 15 H 0.06 3.09 7.12 -2.91 -0.02 3.07 16 16 C 0.00 0.24 5.46 84.65 0.46 0.71 16 17 N -0.93 -55.48 13.29 21.45 0.28 -55.20 16 18 Si 0.95 43.74 29.54 68.60 2.03 45.76 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 C -0.02 -0.88 5.22 30.02 0.16 -0.72 16 23 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.10 1.52 7.28 -2.39 -0.02 1.50 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 30 H 0.17 5.41 8.06 -2.91 -0.02 5.39 16 31 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.12 2.01 7.83 -2.39 -0.02 1.99 16 33 H 0.09 2.62 8.10 -2.39 -0.02 2.60 16 34 H 0.06 1.95 8.11 -2.39 -0.02 1.93 16 35 H -0.01 -0.30 8.12 -2.39 -0.02 -0.32 16 36 H 0.00 -0.18 8.12 -2.39 -0.02 -0.20 16 37 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 38 H 0.08 3.00 7.37 -2.39 -0.02 2.99 16 39 H 0.07 2.65 8.10 -2.39 -0.02 2.63 16 Total: -1.00 -66.44 314.12 4.71 -61.73 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 1.00 Total: 11.11 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 5.09 Total: -28.48 kcal Atomic # 7 Polarization: -86.71 SS G_CDS: -3.41 Total: -90.12 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -66.44 4.71 -61.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259789529.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.065 kcal (2) G-P(sol) polarization free energy of solvation -66.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds