Wall clock time and date at job start Mon Mar 30 2020 06:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47663 * 2 1 4 4 C 1.50708 * 109.46923 * 119.99622 * 2 1 3 5 5 N 1.30779 * 125.72290 * 299.97997 * 4 2 1 6 6 C 1.34427 * 109.32224 * 179.97438 * 5 4 2 7 7 C 1.33866 * 107.79497 * 359.97438 * 6 5 4 8 8 N 1.34409 * 125.72173 * 119.99467 * 4 2 1 9 9 C 1.46470 * 128.44448 * 0.15155 * 8 4 2 10 10 C 1.53286 * 108.68974 * 162.61856 * 9 8 4 11 11 H 1.08991 * 109.42883 * 290.75593 * 10 9 8 12 12 C 1.52995 * 109.42912 * 170.85228 * 10 9 8 13 13 C 1.50700 * 109.47017 * 175.00047 * 12 10 9 14 14 H 1.08001 * 120.00086 * 359.97438 * 13 12 10 15 15 C 1.37881 * 120.00083 * 180.02562 * 13 12 10 16 16 N 1.31509 * 120.00296 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99748 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46835 * 89.99911 * 17 15 13 19 19 H 1.48499 * 109.47076 * 209.99497 * 17 15 13 20 20 H 1.48502 * 109.47406 * 329.99890 * 17 15 13 21 21 C 1.53116 * 109.70586 * 50.78184 * 10 9 8 22 22 C 1.50712 * 128.67738 * 180.02562 * 7 6 5 23 23 H 1.09003 * 109.46953 * 300.00503 * 1 2 3 24 24 H 1.09001 * 109.46673 * 60.00354 * 1 2 3 25 25 H 1.08994 * 109.47551 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47430 * 239.99028 * 2 1 3 27 27 H 1.08995 * 109.47589 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46787 * 299.99576 * 3 2 1 29 29 H 1.09003 * 109.46835 * 59.99611 * 3 2 1 30 30 H 1.07994 * 126.10499 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.60171 * 42.85318 * 9 8 4 32 32 H 1.09002 * 109.59869 * 282.37762 * 9 8 4 33 33 H 1.08996 * 109.47657 * 294.99612 * 12 10 9 34 34 H 1.08993 * 109.47554 * 55.00174 * 12 10 9 35 35 H 0.96995 * 120.00084 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.49943 * 50.04528 * 21 10 9 37 37 H 1.09005 * 109.49320 * 170.14524 * 21 10 9 38 38 H 1.09000 * 109.74700 * 44.62723 * 22 7 6 39 39 H 1.09000 * 109.78450 * 283.92488 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 7 1.7866 -0.3622 2.4670 6 6 2.3948 -1.2235 3.3009 7 6 3.0353 -2.1319 2.5549 8 7 2.8082 -1.8079 1.2414 9 6 3.3416 -2.5573 0.1016 10 6 4.4954 -3.4400 0.5908 11 1 5.3413 -2.8108 0.8671 12 6 4.9154 -4.3950 -0.5283 13 6 6.1274 -5.1774 -0.0925 14 1 6.5555 -5.0099 0.8848 15 6 6.6903 -6.1063 -0.9418 16 7 6.1693 -6.3100 -2.1320 17 14 8.1931 -7.0756 -0.4018 18 1 7.7597 -8.3244 0.2751 19 1 9.0155 -7.4167 -1.5902 20 1 8.9987 -6.2566 0.5392 21 6 4.0448 -4.2501 1.8095 22 6 3.8640 -3.3068 3.0070 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5140 -0.8898 27 1 3.1301 1.4424 0.0005 28 1 1.6769 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 2.3702 -1.1893 4.3800 31 1 3.7079 -1.8622 -0.6539 32 1 2.5572 -3.1833 -0.3237 33 1 4.0979 -5.0825 -0.7452 34 1 5.1556 -3.8221 -1.4239 35 1 6.5651 -6.9637 -2.7293 36 1 3.0985 -4.7438 1.5885 37 1 4.7998 -4.9995 2.0475 38 1 3.3513 -3.8303 3.8140 39 1 4.8377 -2.9602 3.3531 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259791138.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:28 Heat of formation + Delta-G solvation = 22.850061 kcal Electronic energy + Delta-G solvation = -18310.970800 eV Core-core repulsion = 15638.970306 eV Total energy + Delta-G solvation = -2672.000494 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.07310 -36.93924 -35.26977 -33.11483 -32.36676 -30.82727 -27.44359 -27.14487 -26.82169 -23.78471 -23.14665 -22.01751 -20.63834 -19.08552 -18.46523 -16.80070 -16.28480 -15.45841 -14.59361 -14.46142 -14.19895 -13.90889 -13.83162 -13.28124 -13.18410 -12.93280 -12.61098 -12.24701 -12.15271 -11.81945 -11.49378 -11.34845 -11.12177 -10.97936 -10.94640 -10.81221 -10.48126 -10.37085 -9.95372 -9.62241 -9.43013 -9.20240 -9.08277 -8.47103 -7.87534 -6.11784 -4.14437 2.38890 3.14911 3.24974 3.32214 3.34876 3.40627 4.36152 4.50691 4.82715 5.03966 5.10473 5.13972 5.20474 5.26559 5.32734 5.41938 5.59186 5.63814 5.69174 5.76507 5.80409 5.85674 5.89626 5.94564 6.09346 6.23876 6.24000 6.26517 6.31826 6.66458 6.76922 6.83012 6.85824 7.11323 7.47102 7.57047 7.58472 7.85334 8.26328 8.40812 8.90603 9.50263 10.99552 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.033076 B = 0.005250 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.324548 B = 5331.769380 C = 5882.641394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.007 4.007 3 C -0.137 4.137 4 C 0.202 3.798 5 N -0.495 5.495 6 C -0.041 4.041 7 C -0.012 4.012 8 N -0.443 5.443 9 C 0.103 3.897 10 C -0.090 4.090 11 H 0.067 0.933 12 C 0.031 3.969 13 C -0.519 4.519 14 H 0.058 0.942 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.111 4.111 22 C -0.050 4.050 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.163 0.837 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.020 0.980 34 H 0.019 0.981 35 H 0.262 0.738 36 H 0.056 0.944 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.867 9.536 5.017 13.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 C -0.196 4.196 4 C -0.060 4.060 5 N -0.214 5.214 6 C -0.188 4.188 7 C -0.127 4.127 8 N -0.125 5.125 9 C -0.019 4.019 10 C -0.109 4.109 11 H 0.086 0.914 12 C -0.007 4.007 13 C -0.557 4.557 14 H 0.076 0.924 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.719 3.281 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.149 4.149 22 C -0.088 4.088 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.181 0.819 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.270 10.036 4.949 13.914 hybrid contribution 1.378 -1.367 -0.058 1.942 sum -6.892 8.669 4.891 12.107 Atomic orbital electron populations 1.21751 0.93374 1.02040 1.02332 1.19488 0.96411 0.95617 0.91248 1.21757 1.01037 0.94432 1.02329 1.22887 0.98131 0.89500 0.95480 1.70281 1.24444 1.27755 0.98880 1.21715 1.02868 0.95170 0.99062 1.21258 1.06031 1.01809 0.83646 1.45447 1.37557 1.22139 1.07320 1.22309 0.98105 0.94912 0.86570 1.21570 0.94385 0.96776 0.98193 0.91437 1.19084 0.96707 0.93034 0.91842 1.21134 1.12291 1.20957 1.01344 0.92373 1.25002 0.97313 0.97069 0.94887 1.69946 1.40908 1.34683 1.07771 0.86598 0.82886 0.80387 0.78188 1.20592 1.21201 1.19823 1.21678 1.02078 0.97884 0.93261 1.20330 0.97906 0.91892 0.98708 0.91521 0.92117 0.92844 0.90171 0.92798 0.92108 0.91523 0.81924 0.89785 0.90106 0.96157 0.96269 0.92871 0.92544 0.89260 0.90327 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.18 37.16 0.34 -1.20 16 2 C -0.01 -0.09 3.29 -91.77 -0.30 -0.40 16 3 C -0.14 -1.56 9.18 37.16 0.34 -1.22 16 4 C 0.20 3.25 6.45 -155.75 -1.00 2.25 16 5 N -0.49 -8.50 11.27 -11.02 -0.12 -8.62 16 6 C -0.04 -0.66 11.84 -17.95 -0.21 -0.87 16 7 C -0.01 -0.20 6.57 -81.73 -0.54 -0.73 16 8 N -0.44 -7.43 3.13 -109.43 -0.34 -7.77 16 9 C 0.10 1.71 5.71 -3.91 -0.02 1.69 16 10 C -0.09 -1.72 2.13 -90.41 -0.19 -1.91 16 11 H 0.07 1.34 8.11 -51.93 -0.42 0.92 16 12 C 0.03 0.73 4.44 -27.89 -0.12 0.60 16 13 C -0.52 -13.62 8.26 -34.44 -0.28 -13.90 16 14 H 0.06 1.48 7.10 -52.49 -0.37 1.11 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -25.66 13.29 55.43 0.74 -24.93 16 17 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 21 C -0.11 -1.95 5.18 -26.40 -0.14 -2.09 16 22 C -0.05 -0.75 6.31 -27.61 -0.17 -0.93 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.08 0.96 7.28 -51.93 -0.38 0.59 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.16 2.21 8.06 -52.49 -0.42 1.79 16 31 H 0.08 1.31 7.83 -51.93 -0.41 0.90 16 32 H 0.08 1.32 8.13 -51.93 -0.42 0.89 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 37 H 0.09 1.67 6.71 -51.93 -0.35 1.32 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 313.61 15.07 4.73 4.73 Total: -1.00 -29.48 313.61 -8.99 -38.47 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.56 Total: -0.44 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -2.41 Total: -17.20 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.27 Total: -41.32 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.48 -8.99 -38.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259791138.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.319 kcal (2) G-P(sol) polarization free energy of solvation -29.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds