Wall clock time and date at job start Mon Mar 30 2020 06:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47663 * 2 1 4 4 C 1.50708 * 109.46923 * 119.99622 * 2 1 3 5 5 N 1.30779 * 125.72290 * 299.97997 * 4 2 1 6 6 C 1.34427 * 109.32224 * 179.97438 * 5 4 2 7 7 C 1.33866 * 107.79497 * 359.97438 * 6 5 4 8 8 N 1.34409 * 125.72173 * 119.99467 * 4 2 1 9 9 C 1.46470 * 128.44448 * 0.15155 * 8 4 2 10 10 C 1.53286 * 108.68974 * 162.61856 * 9 8 4 11 11 H 1.08991 * 109.42883 * 290.75593 * 10 9 8 12 12 C 1.52995 * 109.42912 * 170.85228 * 10 9 8 13 13 C 1.50700 * 109.47017 * 175.00047 * 12 10 9 14 14 H 1.08001 * 120.00086 * 359.97438 * 13 12 10 15 15 C 1.37881 * 120.00083 * 180.02562 * 13 12 10 16 16 N 1.31509 * 120.00296 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99748 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46835 * 89.99911 * 17 15 13 19 19 H 1.48499 * 109.47076 * 209.99497 * 17 15 13 20 20 H 1.48502 * 109.47406 * 329.99890 * 17 15 13 21 21 C 1.53116 * 109.70586 * 50.78184 * 10 9 8 22 22 C 1.50712 * 128.67738 * 180.02562 * 7 6 5 23 23 H 1.09003 * 109.46953 * 300.00503 * 1 2 3 24 24 H 1.09001 * 109.46673 * 60.00354 * 1 2 3 25 25 H 1.08994 * 109.47551 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47430 * 239.99028 * 2 1 3 27 27 H 1.08995 * 109.47589 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46787 * 299.99576 * 3 2 1 29 29 H 1.09003 * 109.46835 * 59.99611 * 3 2 1 30 30 H 1.07994 * 126.10499 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.60171 * 42.85318 * 9 8 4 32 32 H 1.09002 * 109.59869 * 282.37762 * 9 8 4 33 33 H 1.08996 * 109.47657 * 294.99612 * 12 10 9 34 34 H 1.08993 * 109.47554 * 55.00174 * 12 10 9 35 35 H 0.96995 * 120.00084 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.49943 * 50.04528 * 21 10 9 37 37 H 1.09005 * 109.49320 * 170.14524 * 21 10 9 38 38 H 1.09000 * 109.74700 * 44.62723 * 22 7 6 39 39 H 1.09000 * 109.78450 * 283.92488 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 7 1.7866 -0.3622 2.4670 6 6 2.3948 -1.2235 3.3009 7 6 3.0353 -2.1319 2.5549 8 7 2.8082 -1.8079 1.2414 9 6 3.3416 -2.5573 0.1016 10 6 4.4954 -3.4400 0.5908 11 1 5.3413 -2.8108 0.8671 12 6 4.9154 -4.3950 -0.5283 13 6 6.1274 -5.1774 -0.0925 14 1 6.5555 -5.0099 0.8848 15 6 6.6903 -6.1063 -0.9418 16 7 6.1693 -6.3100 -2.1320 17 14 8.1931 -7.0756 -0.4018 18 1 7.7597 -8.3244 0.2751 19 1 9.0155 -7.4167 -1.5902 20 1 8.9987 -6.2566 0.5392 21 6 4.0448 -4.2501 1.8095 22 6 3.8640 -3.3068 3.0070 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5140 -0.8898 27 1 3.1301 1.4424 0.0005 28 1 1.6769 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 2.3702 -1.1893 4.3800 31 1 3.7079 -1.8622 -0.6539 32 1 2.5572 -3.1833 -0.3237 33 1 4.0979 -5.0825 -0.7452 34 1 5.1556 -3.8221 -1.4239 35 1 6.5651 -6.9637 -2.7293 36 1 3.0985 -4.7438 1.5885 37 1 4.7998 -4.9995 2.0475 38 1 3.3513 -3.8303 3.8140 39 1 4.8377 -2.9602 3.3531 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259791138.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:28 Heat of formation + Delta-G solvation = 8.118626 kcal Electronic energy + Delta-G solvation = -18311.609603 eV Core-core repulsion = 15638.970306 eV Total energy + Delta-G solvation = -2672.639297 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.32691 -38.40520 -36.31422 -34.99575 -33.68392 -32.42316 -28.94209 -28.34839 -28.03011 -25.38578 -24.55883 -23.26243 -22.11826 -20.35681 -19.83431 -18.53270 -17.74992 -16.82239 -16.45396 -15.60370 -15.43222 -15.27745 -15.10137 -14.51185 -14.47567 -14.16920 -14.07989 -13.90113 -13.47162 -13.03464 -12.83996 -12.74634 -12.53345 -12.44631 -12.28010 -12.08282 -11.93001 -11.84587 -11.60046 -11.23130 -11.10822 -10.82627 -10.55121 -10.41460 -9.10063 -8.20043 -6.28814 1.14594 1.41413 1.42244 1.52359 1.88295 2.17241 2.41334 3.14904 3.42998 3.61611 3.72119 3.80134 3.99863 4.06585 4.20728 4.28515 4.33219 4.39156 4.54150 4.61628 4.77224 4.81268 4.82762 4.85695 4.95710 4.97893 5.04922 5.12299 5.22257 5.34493 5.35231 5.35893 5.47444 5.57242 5.66557 5.81193 5.89390 6.20603 6.34211 6.85471 7.16545 7.39951 8.91838 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.033076 B = 0.005250 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.324548 B = 5331.769380 C = 5882.641394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.013 4.013 3 C -0.131 4.131 4 C 0.200 3.800 5 N -0.516 5.516 6 C -0.046 4.046 7 C -0.030 4.030 8 N -0.452 5.452 9 C 0.111 3.889 10 C -0.080 4.080 11 H 0.059 0.941 12 C 0.038 3.962 13 C -0.529 4.529 14 H 0.063 0.937 15 C 0.004 3.996 16 N -0.932 5.932 17 Si 0.957 3.043 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.264 1.264 21 C -0.107 4.107 22 C -0.039 4.039 23 H 0.057 0.943 24 H 0.086 0.914 25 H 0.044 0.956 26 H 0.087 0.913 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.186 0.814 31 H 0.094 0.906 32 H 0.083 0.917 33 H -0.001 1.001 34 H -0.003 1.003 35 H 0.262 0.738 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.905 10.125 5.884 14.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.033 4.033 3 C -0.189 4.189 4 C -0.063 4.063 5 N -0.235 5.235 6 C -0.193 4.193 7 C -0.144 4.144 8 N -0.134 5.134 9 C -0.011 4.011 10 C -0.099 4.099 11 H 0.078 0.922 12 C 0.000 4.000 13 C -0.567 4.567 14 H 0.082 0.918 15 C -0.194 4.194 16 N -0.573 5.573 17 Si 0.783 3.217 18 H -0.199 1.199 19 H -0.212 1.212 20 H -0.188 1.188 21 C -0.145 4.145 22 C -0.077 4.077 23 H 0.076 0.924 24 H 0.105 0.895 25 H 0.063 0.937 26 H 0.105 0.895 27 H 0.062 0.938 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.203 0.797 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.017 0.983 34 H 0.015 0.985 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.121 0.879 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.311 10.633 5.843 14.706 hybrid contribution 1.352 -1.514 -0.338 2.058 sum -6.959 9.119 5.505 12.724 Atomic orbital electron populations 1.21708 0.92164 1.01769 1.03215 1.19725 0.97407 0.96133 0.90081 1.21716 1.00368 0.93623 1.03225 1.23569 0.97306 0.89044 0.96334 1.70312 1.25263 1.28420 0.99491 1.22154 1.02254 0.94723 1.00199 1.21552 1.06694 1.02508 0.83689 1.45509 1.38068 1.22534 1.07314 1.22106 0.97253 0.94886 0.86815 1.21315 0.95130 0.96168 0.97246 0.92227 1.18919 0.95337 0.93085 0.92634 1.21547 1.12854 1.20892 1.01457 0.91836 1.25856 1.00318 0.98300 0.94930 1.70070 1.42570 1.35638 1.08990 0.85559 0.79317 0.79060 0.77809 1.19905 1.21188 1.18833 1.21580 1.01243 0.97906 0.93731 1.20296 0.98518 0.90936 0.97986 0.92376 0.89472 0.93673 0.89485 0.93758 0.89448 0.92372 0.79682 0.88801 0.89916 0.98292 0.98456 0.92869 0.92940 0.90603 0.87853 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.18 71.98 0.66 -2.03 16 2 C -0.01 -0.32 3.29 -11.54 -0.04 -0.35 16 3 C -0.13 -2.74 9.18 71.98 0.66 -2.08 16 4 C 0.20 6.18 6.45 138.25 0.89 7.07 16 5 N -0.52 -17.06 11.27 -188.77 -2.13 -19.19 16 6 C -0.05 -1.43 11.84 83.30 0.99 -0.45 16 7 C -0.03 -0.93 6.57 40.73 0.27 -0.66 16 8 N -0.45 -14.69 3.13 -500.11 -1.57 -16.25 16 9 C 0.11 3.65 5.71 86.48 0.49 4.15 16 10 C -0.08 -3.02 2.13 -10.66 -0.02 -3.05 16 11 H 0.06 2.35 8.11 -2.39 -0.02 2.34 16 12 C 0.04 1.83 4.44 29.85 0.13 1.96 16 13 C -0.53 -27.95 8.26 25.60 0.21 -27.74 16 14 H 0.06 3.21 7.10 -2.91 -0.02 3.19 16 15 C 0.00 0.21 5.46 84.66 0.46 0.68 16 16 N -0.93 -54.33 13.29 21.45 0.28 -54.04 16 17 Si 0.96 42.51 29.54 68.60 2.03 44.54 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 19 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 21 C -0.11 -3.67 5.18 30.81 0.16 -3.51 16 22 C -0.04 -1.11 6.31 30.02 0.19 -0.92 16 23 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.09 1.94 7.28 -2.39 -0.02 1.93 16 27 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.19 4.61 8.06 -2.91 -0.02 4.58 16 31 H 0.09 2.87 7.83 -2.39 -0.02 2.85 16 32 H 0.08 2.68 8.13 -2.39 -0.02 2.66 16 33 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 34 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 35 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 36 H 0.05 1.82 8.12 -2.39 -0.02 1.80 16 37 H 0.08 2.80 6.71 -2.38 -0.02 2.78 16 38 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -62.68 313.61 4.67 -58.00 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 1.00 Total: 13.89 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: 5.05 Total: -26.95 kcal Atomic # 7 Polarization: -86.07 SS G_CDS: -3.41 Total: -89.48 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -62.68 4.67 -58.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259791138.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.122 kcal (2) G-P(sol) polarization free energy of solvation -62.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds