Wall clock time and date at job start Mon Mar 30 2020 06:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47227 * 2 1 4 4 C 1.52997 * 109.47565 * 120.00103 * 2 1 3 5 5 H 1.09003 * 109.46966 * 304.03313 * 4 2 1 6 6 C 1.50700 * 109.47371 * 184.03136 * 4 2 1 7 7 H 1.07996 * 119.99983 * 297.52767 * 6 4 2 8 8 C 1.37872 * 119.99842 * 117.53144 * 6 4 2 9 9 N 1.31512 * 120.00088 * 174.19793 * 8 6 4 10 10 Si 1.86807 * 120.00283 * 354.19987 * 8 6 4 11 11 H 1.48495 * 109.47293 * 88.30980 * 10 8 6 12 12 H 1.48498 * 109.47206 * 208.31456 * 10 8 6 13 13 H 1.48499 * 109.46680 * 328.31196 * 10 8 6 14 14 C 1.50704 * 109.46995 * 64.03141 * 4 2 1 15 15 C 1.34671 * 126.58964 * 35.04499 * 14 4 2 16 16 N 1.34128 * 108.01978 * 179.97438 * 15 14 4 17 17 C 1.30509 * 109.25459 * 359.72224 * 16 15 14 18 18 N 1.35039 * 108.69862 * 0.44754 * 17 16 15 19 19 C 1.46498 * 126.39881 * 179.82400 * 18 17 16 20 20 C 1.53781 * 113.61249 * 299.69090 * 19 18 17 21 21 C 1.53779 * 87.08429 * 89.11368 * 20 19 18 22 22 C 1.53778 * 87.17426 * 25.38930 * 21 20 19 23 23 H 1.09001 * 109.46805 * 300.00097 * 1 2 3 24 24 H 1.08998 * 109.47345 * 59.99964 * 1 2 3 25 25 H 1.08998 * 109.47299 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47234 * 240.00508 * 2 1 3 27 27 H 1.08995 * 109.47227 * 186.04975 * 3 2 1 28 28 H 1.08999 * 109.47343 * 306.04736 * 3 2 1 29 29 H 1.08999 * 109.47322 * 66.05237 * 3 2 1 30 30 H 0.97000 * 120.00613 * 180.02562 * 9 8 6 31 31 H 1.07993 * 125.99080 * 359.96174 * 15 14 4 32 32 H 1.07998 * 125.64668 * 180.28902 * 17 16 15 33 33 H 1.08995 * 112.91237 * 168.43621 * 19 18 17 34 34 H 1.08996 * 113.61510 * 334.55964 * 20 19 18 35 35 H 1.09005 * 113.68988 * 203.67663 * 20 19 18 36 36 H 1.08997 * 113.61654 * 139.98333 * 21 20 19 37 37 H 1.09005 * 113.61212 * 270.80103 * 21 20 19 38 38 H 1.08997 * 113.61295 * 89.15482 * 22 21 20 39 39 H 1.08999 * 113.61329 * 220.06461 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6189 -0.2508 2.1377 6 6 3.5437 -0.6353 1.3001 7 1 4.1371 -1.0864 0.5186 8 6 4.1618 0.0192 2.3443 9 7 5.4724 -0.0030 2.4507 10 14 3.1377 0.9375 3.6083 11 1 2.7491 0.0088 4.6999 12 1 3.9337 2.0576 4.1711 13 1 1.9159 1.4762 2.9583 14 6 1.6210 -2.1680 1.2002 15 6 1.5239 -2.9389 0.1002 16 7 1.1210 -4.1595 0.4832 17 6 0.9704 -4.1760 1.7795 18 7 1.2663 -2.9513 2.2653 19 6 1.2223 -2.5396 3.6705 20 6 -0.1710 -2.6721 4.3078 21 6 0.2251 -4.1091 4.6859 22 6 1.6875 -3.6352 4.6470 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1245 1.4444 -0.1083 28 1 1.5910 1.9867 -0.8309 29 1 1.7678 1.9241 0.9392 30 1 5.9073 0.4571 3.1856 31 1 1.7335 -2.6285 -0.9127 32 1 0.6582 -5.0274 2.3660 33 1 1.6913 -1.5711 3.8439 34 1 -0.9874 -2.6193 3.5876 35 1 -0.3228 -2.0203 5.1682 36 1 -0.1109 -4.4077 5.6789 37 1 -0.0161 -4.8447 3.9185 38 1 2.0461 -3.2468 5.6002 39 1 2.3692 -4.3589 4.2002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259807017.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:59 Heat of formation + Delta-G solvation = 69.796795 kcal Electronic energy + Delta-G solvation = -19267.083333 eV Core-core repulsion = 16597.118602 eV Total energy + Delta-G solvation = -2669.964731 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.61892 -38.26868 -36.12432 -32.37720 -31.65185 -29.55093 -27.24822 -25.93573 -25.67450 -25.35001 -22.85246 -20.90142 -20.65869 -19.17766 -18.07551 -17.13316 -16.37734 -15.50706 -14.66329 -14.48175 -14.26273 -13.78997 -13.59089 -13.07703 -12.91377 -12.50062 -12.45206 -12.32593 -12.06145 -11.86460 -11.55965 -11.03476 -10.87710 -10.82843 -10.55832 -10.45582 -10.34615 -10.11088 -9.84561 -9.69530 -9.37539 -8.97494 -8.75460 -8.65324 -7.33432 -6.20193 -4.17149 2.87414 3.05946 3.20518 3.21540 3.37331 3.98041 4.24661 4.46132 4.61361 4.88113 4.94139 5.11951 5.20461 5.47660 5.61791 5.64917 5.75234 5.83621 5.85849 5.89036 5.95700 5.98405 6.02503 6.25918 6.31058 6.35381 6.44280 6.53819 6.62210 6.65673 6.83506 6.94709 7.17506 7.27674 7.41308 7.56150 7.64868 7.99807 8.40871 8.86116 8.88720 9.40829 10.93110 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.017657 B = 0.011353 C = 0.008892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.401664 B = 2465.791716 C = 3148.127346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.077 4.077 3 C -0.134 4.134 4 C 0.081 3.919 5 H 0.040 0.960 6 C -0.495 4.495 7 H 0.079 0.921 8 C 0.076 3.924 9 N -0.892 5.892 10 Si 0.857 3.143 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.257 1.257 14 C 0.054 3.946 15 C -0.062 4.062 16 N -0.495 5.495 17 C 0.139 3.861 18 N -0.437 5.437 19 C 0.106 3.894 20 C -0.149 4.149 21 C -0.145 4.145 22 C -0.144 4.144 23 H 0.041 0.959 24 H 0.043 0.957 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.034 0.966 29 H 0.042 0.958 30 H 0.265 0.735 31 H 0.158 0.842 32 H 0.190 0.810 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.485 -2.650 4.263 11.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.097 4.097 3 C -0.191 4.191 4 C 0.060 3.940 5 H 0.058 0.942 6 C -0.533 4.533 7 H 0.097 0.903 8 C -0.126 4.126 9 N -0.530 5.530 10 Si 0.686 3.314 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.181 1.181 14 C -0.061 4.061 15 C -0.208 4.208 16 N -0.214 5.214 17 C -0.141 4.141 18 N -0.121 5.121 19 C 0.001 3.999 20 C -0.187 4.187 21 C -0.182 4.182 22 C -0.182 4.182 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.176 0.824 32 H 0.207 0.793 33 H 0.126 0.874 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.114 0.886 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.454 -3.222 3.966 11.636 hybrid contribution -0.144 1.127 1.459 1.849 sum -10.599 -2.095 5.424 12.089 Atomic orbital electron populations 1.21935 0.97506 1.00971 1.00099 1.21103 0.92824 0.96407 0.99343 1.21729 1.02537 0.95399 0.99436 1.17943 0.96871 0.84178 0.94973 0.94218 1.20830 0.88006 1.34934 1.09494 0.90341 1.25027 0.94650 0.95979 0.96935 1.69883 1.08299 1.42973 1.31798 0.87253 0.81391 0.80687 0.82111 1.20307 1.21207 1.18146 1.22225 1.00603 0.97288 0.86002 1.21716 1.10808 0.89888 0.98378 1.70123 1.18567 1.22680 1.09992 1.24521 1.09042 0.89201 0.91295 1.44909 1.50545 1.10666 1.05987 1.22307 0.97904 1.00335 0.79384 1.23333 0.96824 0.97614 1.00969 1.23050 0.96280 0.96815 1.02037 1.23299 0.97196 0.98155 0.99563 0.93983 0.93837 0.93032 0.91697 0.91065 0.94735 0.93881 0.92522 0.82419 0.79334 0.87362 0.90629 0.88783 0.90993 0.89687 0.88607 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 8.98 37.15 0.33 -2.22 16 2 C -0.08 -1.53 2.20 -90.62 -0.20 -1.73 16 3 C -0.13 -2.59 8.75 37.16 0.33 -2.26 16 4 C 0.08 1.80 1.45 -92.92 -0.14 1.66 16 5 H 0.04 0.90 3.91 -51.93 -0.20 0.70 16 6 C -0.49 -13.03 7.50 -34.44 -0.26 -13.29 16 7 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 8 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 9 N -0.89 -26.02 13.96 55.43 0.77 -25.25 16 10 Si 0.86 19.84 25.36 -169.99 -4.31 15.53 16 11 H -0.28 -6.07 6.39 56.52 0.36 -5.71 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 13 H -0.26 -5.64 5.52 56.52 0.31 -5.33 16 14 C 0.05 1.17 4.99 -81.60 -0.41 0.76 16 15 C -0.06 -1.34 10.45 -17.81 -0.19 -1.53 16 16 N -0.50 -10.37 11.25 -14.67 -0.17 -10.54 16 17 C 0.14 2.57 11.17 -90.37 -1.01 1.56 16 18 N -0.44 -8.47 2.94 -105.96 -0.31 -8.78 16 19 C 0.11 1.79 4.70 -67.02 -0.31 1.48 16 20 C -0.15 -1.95 7.79 -25.92 -0.20 -2.15 16 21 C -0.14 -1.65 7.57 -25.92 -0.20 -1.85 16 22 C -0.14 -2.01 7.51 -25.82 -0.19 -2.20 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.91 6.88 -51.93 -0.36 0.55 16 26 H 0.06 1.28 7.11 -51.93 -0.37 0.92 16 27 H 0.07 1.51 7.34 -51.93 -0.38 1.13 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.85 6.66 -51.93 -0.35 0.50 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.16 3.21 7.29 -52.49 -0.38 2.82 16 32 H 0.19 2.77 5.87 -52.49 -0.31 2.46 16 33 H 0.11 2.11 4.90 -51.93 -0.25 1.86 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.94 5.65 -51.93 -0.29 0.64 16 38 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.08 1.17 8.01 -51.93 -0.42 0.76 16 LS Contribution 298.05 15.07 4.49 4.49 Total: -1.00 -29.54 298.05 -8.02 -37.56 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -5.96 Total: 6.77 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -2.54 Total: -19.79 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.30 Total: -44.56 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.31 Total: 15.53 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.54 -8.02 -37.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259807017.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.356 kcal (2) G-P(sol) polarization free energy of solvation -29.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds