Wall clock time and date at job start Mon Mar 30 2020 06:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47227 * 2 1 4 4 C 1.52997 * 109.47565 * 120.00103 * 2 1 3 5 5 H 1.09003 * 109.46966 * 304.03313 * 4 2 1 6 6 C 1.50700 * 109.47371 * 184.03136 * 4 2 1 7 7 H 1.07996 * 119.99983 * 297.52767 * 6 4 2 8 8 C 1.37872 * 119.99842 * 117.53144 * 6 4 2 9 9 N 1.31512 * 120.00088 * 174.19793 * 8 6 4 10 10 Si 1.86807 * 120.00283 * 354.19987 * 8 6 4 11 11 H 1.48495 * 109.47293 * 88.30980 * 10 8 6 12 12 H 1.48498 * 109.47206 * 208.31456 * 10 8 6 13 13 H 1.48499 * 109.46680 * 328.31196 * 10 8 6 14 14 C 1.50704 * 109.46995 * 64.03141 * 4 2 1 15 15 C 1.34671 * 126.58964 * 35.04499 * 14 4 2 16 16 N 1.34128 * 108.01978 * 179.97438 * 15 14 4 17 17 C 1.30509 * 109.25459 * 359.72224 * 16 15 14 18 18 N 1.35039 * 108.69862 * 0.44754 * 17 16 15 19 19 C 1.46498 * 126.39881 * 179.82400 * 18 17 16 20 20 C 1.53781 * 113.61249 * 299.69090 * 19 18 17 21 21 C 1.53779 * 87.08429 * 89.11368 * 20 19 18 22 22 C 1.53778 * 87.17426 * 25.38930 * 21 20 19 23 23 H 1.09001 * 109.46805 * 300.00097 * 1 2 3 24 24 H 1.08998 * 109.47345 * 59.99964 * 1 2 3 25 25 H 1.08998 * 109.47299 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47234 * 240.00508 * 2 1 3 27 27 H 1.08995 * 109.47227 * 186.04975 * 3 2 1 28 28 H 1.08999 * 109.47343 * 306.04736 * 3 2 1 29 29 H 1.08999 * 109.47322 * 66.05237 * 3 2 1 30 30 H 0.97000 * 120.00613 * 180.02562 * 9 8 6 31 31 H 1.07993 * 125.99080 * 359.96174 * 15 14 4 32 32 H 1.07998 * 125.64668 * 180.28902 * 17 16 15 33 33 H 1.08995 * 112.91237 * 168.43621 * 19 18 17 34 34 H 1.08996 * 113.61510 * 334.55964 * 20 19 18 35 35 H 1.09005 * 113.68988 * 203.67663 * 20 19 18 36 36 H 1.08997 * 113.61654 * 139.98333 * 21 20 19 37 37 H 1.09005 * 113.61212 * 270.80103 * 21 20 19 38 38 H 1.08997 * 113.61295 * 89.15482 * 22 21 20 39 39 H 1.08999 * 113.61329 * 220.06461 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6189 -0.2508 2.1377 6 6 3.5437 -0.6353 1.3001 7 1 4.1371 -1.0864 0.5186 8 6 4.1618 0.0192 2.3443 9 7 5.4724 -0.0030 2.4507 10 14 3.1377 0.9375 3.6083 11 1 2.7491 0.0088 4.6999 12 1 3.9337 2.0576 4.1711 13 1 1.9159 1.4762 2.9583 14 6 1.6210 -2.1680 1.2002 15 6 1.5239 -2.9389 0.1002 16 7 1.1210 -4.1595 0.4832 17 6 0.9704 -4.1760 1.7795 18 7 1.2663 -2.9513 2.2653 19 6 1.2223 -2.5396 3.6705 20 6 -0.1710 -2.6721 4.3078 21 6 0.2251 -4.1091 4.6859 22 6 1.6875 -3.6352 4.6470 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1245 1.4444 -0.1083 28 1 1.5910 1.9867 -0.8309 29 1 1.7678 1.9241 0.9392 30 1 5.9073 0.4571 3.1856 31 1 1.7335 -2.6285 -0.9127 32 1 0.6582 -5.0274 2.3660 33 1 1.6913 -1.5711 3.8439 34 1 -0.9874 -2.6193 3.5876 35 1 -0.3228 -2.0203 5.1682 36 1 -0.1109 -4.4077 5.6789 37 1 -0.0161 -4.8447 3.9185 38 1 2.0461 -3.2468 5.6002 39 1 2.3692 -4.3589 4.2002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259807017.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:58 Heat of formation + Delta-G solvation = 53.540395 kcal Electronic energy + Delta-G solvation = -19267.788263 eV Core-core repulsion = 16597.118602 eV Total energy + Delta-G solvation = -2670.669661 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.12237 -39.44574 -37.80156 -34.38675 -33.14029 -31.19930 -28.98295 -27.48531 -26.73226 -26.54339 -24.70996 -22.47287 -21.93078 -20.63717 -19.65092 -19.15661 -17.71175 -16.79035 -16.23523 -15.96898 -15.80284 -15.27036 -15.09000 -14.81132 -14.57845 -14.04156 -13.92365 -13.51195 -13.41372 -13.32544 -13.11525 -12.73756 -12.50188 -12.12879 -11.90330 -11.83429 -11.67361 -11.64073 -11.47292 -11.37624 -11.12336 -10.67860 -10.63497 -10.23824 -8.98501 -8.30882 -6.32297 1.20060 1.29680 1.33928 1.38878 1.96689 2.27615 2.36105 3.06597 3.35269 3.56351 3.78636 3.82162 3.89077 3.98631 4.26366 4.35613 4.45538 4.49772 4.63176 4.67771 4.67962 4.74400 4.89718 4.91852 4.93603 5.01852 5.03742 5.10988 5.13546 5.25747 5.33046 5.39017 5.50958 5.61045 5.70359 5.79704 5.97736 6.30669 6.54016 6.72136 7.26583 7.31496 8.86541 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.017657 B = 0.011353 C = 0.008892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.401664 B = 2465.791716 C = 3148.127346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.080 4.080 3 C -0.130 4.130 4 C 0.088 3.912 5 H 0.040 0.960 6 C -0.490 4.490 7 H 0.027 0.973 8 C 0.024 3.976 9 N -0.946 5.946 10 Si 0.914 3.086 11 H -0.256 1.256 12 H -0.290 1.290 13 H -0.236 1.236 14 C 0.028 3.972 15 C -0.072 4.072 16 N -0.523 5.523 17 C 0.158 3.842 18 N -0.438 5.438 19 C 0.074 3.926 20 C -0.136 4.136 21 C -0.126 4.126 22 C -0.144 4.144 23 H 0.047 0.953 24 H 0.068 0.932 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.040 0.960 30 H 0.265 0.735 31 H 0.156 0.844 32 H 0.229 0.771 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.571 -2.983 6.024 15.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.099 4.099 3 C -0.187 4.187 4 C 0.068 3.932 5 H 0.058 0.942 6 C -0.528 4.528 7 H 0.045 0.955 8 C -0.174 4.174 9 N -0.586 5.586 10 Si 0.738 3.262 11 H -0.181 1.181 12 H -0.217 1.217 13 H -0.159 1.159 14 C -0.088 4.088 15 C -0.217 4.217 16 N -0.242 5.242 17 C -0.123 4.123 18 N -0.121 5.121 19 C -0.030 4.030 20 C -0.174 4.174 21 C -0.163 4.163 22 C -0.182 4.182 23 H 0.066 0.934 24 H 0.087 0.913 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.174 0.826 32 H 0.245 0.755 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.133 0.867 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.127 0.873 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.567 -3.558 5.728 15.150 hybrid contribution 0.878 1.146 0.842 1.671 sum -12.689 -2.412 6.570 14.491 Atomic orbital electron populations 1.21798 0.94833 1.01062 1.01613 1.21075 0.95035 0.96144 0.97650 1.21676 1.00776 0.95554 1.00683 1.17800 0.93825 0.85360 0.96191 0.94164 1.20902 0.90226 1.33842 1.07828 0.95486 1.25785 0.95528 0.96855 0.99183 1.70047 1.10516 1.44876 1.33141 0.86318 0.80338 0.79474 0.80035 1.18079 1.21666 1.15936 1.22029 1.02508 0.97149 0.87076 1.21809 1.10909 0.90438 0.98580 1.70124 1.20133 1.22414 1.11524 1.25280 1.06467 0.89628 0.90900 1.45083 1.49774 1.10537 1.06686 1.22733 1.01418 1.00142 0.78664 1.23346 0.93884 0.99184 1.01026 1.22983 0.93527 0.95823 1.03919 1.23377 0.98954 0.96848 0.99000 0.93378 0.91333 0.93654 0.92563 0.94070 0.91476 0.94058 0.92602 0.82623 0.75464 0.90211 0.90813 0.86706 0.87947 0.89162 0.87270 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.39 8.98 71.98 0.65 -3.75 16 2 C -0.08 -3.13 2.20 -10.80 -0.02 -3.15 16 3 C -0.13 -4.93 8.75 71.98 0.63 -4.30 16 4 C 0.09 3.98 1.45 -12.29 -0.02 3.96 16 5 H 0.04 1.79 3.91 -2.39 -0.01 1.78 16 6 C -0.49 -26.98 7.50 25.60 0.19 -26.79 16 7 H 0.03 1.72 8.06 -2.91 -0.02 1.69 16 8 C 0.02 1.33 5.47 84.65 0.46 1.79 16 9 N -0.95 -57.69 13.96 21.45 0.30 -57.39 16 10 Si 0.91 40.99 25.36 68.60 1.74 42.73 16 11 H -0.26 -10.53 6.39 99.48 0.64 -9.90 16 12 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 13 H -0.24 -9.68 5.52 99.48 0.55 -9.13 16 14 C 0.03 1.23 4.99 40.95 0.20 1.44 16 15 C -0.07 -3.13 10.45 83.52 0.87 -2.25 16 16 N -0.52 -21.53 11.25 -200.31 -2.25 -23.78 16 17 C 0.16 5.53 11.17 180.26 2.01 7.54 16 18 N -0.44 -16.44 2.94 -489.13 -1.44 -17.88 16 19 C 0.07 2.37 4.70 45.58 0.21 2.59 16 20 C -0.14 -3.03 7.79 31.12 0.24 -2.79 16 21 C -0.13 -2.29 7.57 31.12 0.24 -2.05 16 22 C -0.14 -3.60 7.51 31.18 0.23 -3.37 16 23 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.04 1.52 6.88 -2.39 -0.02 1.50 16 26 H 0.06 2.28 7.11 -2.38 -0.02 2.26 16 27 H 0.04 1.78 7.34 -2.39 -0.02 1.76 16 28 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.04 1.55 6.66 -2.39 -0.02 1.54 16 30 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 31 H 0.16 6.56 7.29 -2.91 -0.02 6.54 16 32 H 0.23 5.86 5.87 -2.91 -0.02 5.84 16 33 H 0.08 2.99 4.90 -2.39 -0.01 2.98 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.09 1.55 5.65 -2.38 -0.01 1.54 16 38 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.07 1.84 8.01 -2.39 -0.02 1.82 16 Total: -1.00 -67.47 298.05 5.06 -62.41 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.80 Total: 25.03 kcal Atomic # 6 Polarization: -37.03 SS G_CDS: 5.91 Total: -31.12 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -3.39 Total: -99.05 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 1.74 Total: 42.73 kcal Total: -67.47 5.06 -62.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259807017.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.952 kcal (2) G-P(sol) polarization free energy of solvation -67.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds