Wall clock time and date at job start Mon Mar 30 2020 05:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30422 * 125.24997 * 2 1 4 4 C 1.36263 * 109.19891 * 180.02562 * 3 2 1 5 5 C 1.41222 * 126.56584 * 180.27830 * 4 3 2 6 6 H 1.08006 * 119.99649 * 173.87980 * 5 4 3 7 7 C 1.39711 * 120.00339 * 353.87860 * 5 4 3 8 8 N 1.31015 * 119.99956 * 5.97941 * 7 5 4 9 9 Si 1.86798 * 120.00208 * 185.97665 * 7 5 4 10 10 H 1.48508 * 109.46994 * 94.98079 * 9 7 5 11 11 H 1.48498 * 109.47574 * 214.98126 * 9 7 5 12 12 H 1.48503 * 109.47009 * 334.98519 * 9 7 5 13 13 C 1.38245 * 106.86450 * 0.02562 * 4 3 2 14 14 N 1.35461 * 125.25477 * 179.97438 * 2 1 3 15 15 C 1.46569 * 128.12819 * 359.86616 * 14 2 1 16 16 C 1.53262 * 108.72897 * 197.45078 * 15 14 2 17 17 C 1.53131 * 109.70521 * 309.17898 * 16 15 14 18 18 H 1.08999 * 109.50957 * 309.74123 * 17 16 15 19 19 C 1.52997 * 109.54861 * 189.62576 * 17 16 15 20 20 C 1.52999 * 109.47371 * 60.21952 * 19 17 16 21 21 C 1.53005 * 109.47260 * 180.21907 * 19 17 16 22 22 C 1.50610 * 128.69408 * 179.90499 * 13 4 3 23 23 H 1.09001 * 109.47617 * 270.02485 * 1 2 3 24 24 H 1.09002 * 109.47388 * 30.03553 * 1 2 3 25 25 H 1.09004 * 109.46658 * 150.02899 * 1 2 3 26 26 H 0.96993 * 120.00596 * 180.02562 * 8 7 5 27 27 H 1.08992 * 109.59062 * 77.67202 * 15 14 2 28 28 H 1.09003 * 109.71777 * 317.29631 * 15 14 2 29 29 H 1.09007 * 109.42607 * 189.11063 * 16 15 14 30 30 H 1.08997 * 109.39546 * 69.23028 * 16 15 14 31 31 H 1.09007 * 109.47034 * 300.21534 * 19 17 16 32 32 H 1.08995 * 109.47270 * 60.00186 * 20 19 17 33 33 H 1.09010 * 109.47199 * 180.02562 * 20 19 17 34 34 H 1.09001 * 109.46812 * 299.99420 * 20 19 17 35 35 H 1.08997 * 109.46792 * 300.00350 * 21 19 17 36 36 H 1.09000 * 109.46567 * 59.99681 * 21 19 17 37 37 H 1.08996 * 109.47266 * 179.97438 * 21 19 17 38 38 H 1.09003 * 109.74183 * 315.26809 * 22 13 4 39 39 H 1.09004 * 109.73814 * 75.97080 * 22 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2597 1.0651 0.0000 4 6 3.5692 0.6883 -0.0006 5 6 4.6913 1.5457 0.0047 6 1 5.6849 1.1341 0.1034 7 6 4.5162 2.9264 -0.1176 8 7 3.3092 3.4360 -0.1195 9 14 6.0028 4.0459 -0.2786 10 1 6.2707 4.3095 -1.7154 11 1 5.7340 5.3293 0.4183 12 1 7.1858 3.3888 0.3330 13 6 3.5888 -0.6940 -0.0015 14 7 2.2888 -1.1062 0.0005 15 6 1.8697 -2.5106 0.0038 16 6 3.0566 -3.3774 0.4384 17 6 4.2897 -3.0203 -0.3964 18 1 4.0288 -3.0318 -1.4546 19 6 5.3993 -4.0401 -0.1327 20 6 4.9122 -5.4366 -0.5243 21 6 6.6323 -3.6785 -0.9633 22 6 4.7775 -1.6188 -0.0044 23 1 -0.3634 0.0004 1.0276 24 1 -0.3634 0.8897 -0.5144 25 1 -0.3633 -0.8903 -0.5134 26 1 3.1875 4.3945 -0.2048 27 1 1.5532 -2.7999 -0.9982 28 1 1.0433 -2.6461 0.7016 29 1 2.8108 -4.4291 0.2907 30 1 3.2683 -3.1990 1.4926 31 1 5.6586 -4.0293 0.9261 32 1 4.6530 -5.4474 -1.5829 33 1 5.7026 -6.1633 -0.3359 34 1 4.0339 -5.6942 0.0676 35 1 6.3730 -3.6892 -2.0220 36 1 6.9793 -2.6836 -0.6843 37 1 7.4230 -4.4048 -0.7751 38 1 5.5143 -1.2691 -0.7276 39 1 5.2227 -1.6491 0.9901 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259822394.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:42 Heat of formation + Delta-G solvation = 27.428666 kcal Electronic energy + Delta-G solvation = -18659.033722 eV Core-core repulsion = 15987.231771 eV Total energy + Delta-G solvation = -2671.801951 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.41847 -37.51310 -33.97808 -32.84974 -31.33045 -29.40858 -28.88728 -26.87766 -26.86519 -23.95343 -22.81230 -21.28922 -19.56481 -19.21303 -17.80077 -16.75944 -14.94829 -14.86073 -14.57504 -14.37883 -14.17225 -13.52669 -13.32603 -12.97657 -12.60368 -12.40605 -12.16067 -12.09093 -11.87086 -11.75113 -11.35291 -11.30674 -11.10570 -10.87955 -10.80730 -10.72505 -10.25345 -10.17342 -9.99310 -9.92007 -9.67198 -9.01776 -7.88155 -7.74709 -6.66168 -6.11254 -3.86719 3.18865 3.30964 3.34524 3.58392 4.13462 4.31390 4.69237 4.84746 4.98433 5.06164 5.24110 5.33391 5.55178 5.68644 5.72017 5.74888 5.81898 5.83697 5.85572 5.93899 5.95105 6.00376 6.07425 6.18920 6.26038 6.29652 6.34423 6.44028 6.49890 6.51751 6.64300 6.81283 6.91699 7.37685 7.63323 7.92700 8.15168 8.57052 8.90135 9.24670 9.44454 10.15235 10.83421 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.020182 B = 0.007836 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.023853 B = 3572.227763 C = 4863.244229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.158 3.842 3 N -0.455 5.455 4 C 0.204 3.796 5 C -0.452 4.452 6 H 0.073 0.927 7 C 0.076 3.924 8 N -0.774 5.774 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.267 1.267 13 C -0.194 4.194 14 N -0.464 5.464 15 C 0.118 3.882 16 C -0.123 4.123 17 C -0.082 4.082 18 H 0.066 0.934 19 C -0.091 4.091 20 C -0.148 4.148 21 C -0.148 4.148 22 C 0.004 3.996 23 H 0.059 0.941 24 H 0.076 0.924 25 H 0.051 0.949 26 H 0.264 0.736 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.048 0.952 38 H 0.063 0.937 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.033 -13.639 -0.416 13.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.102 4.102 3 N -0.179 5.179 4 C 0.081 3.919 5 C -0.487 4.487 6 H 0.091 0.909 7 C -0.142 4.142 8 N -0.401 5.401 9 Si 0.722 3.278 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.191 1.191 13 C -0.301 4.301 14 N -0.157 5.157 15 C -0.006 4.006 16 C -0.160 4.160 17 C -0.101 4.101 18 H 0.084 0.916 19 C -0.109 4.109 20 C -0.205 4.205 21 C -0.205 4.205 22 C -0.035 4.035 23 H 0.078 0.922 24 H 0.095 0.905 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.431 -12.751 -0.422 12.766 hybrid contribution 0.856 -0.291 -0.100 0.909 sum 0.424 -13.043 -0.522 13.060 Atomic orbital electron populations 1.19880 0.87920 1.01855 1.01375 1.23198 0.94564 0.82413 1.10005 1.71384 1.02310 1.23714 1.20506 1.18009 0.90317 0.87558 0.96023 1.18417 0.91856 0.90155 1.48297 0.90855 1.25745 0.95892 0.98679 0.93841 1.70111 1.21302 1.12090 1.36560 0.86519 0.82832 0.79832 0.78594 1.20136 1.20759 1.19089 1.20710 0.83454 0.94764 1.31196 1.44545 1.06644 1.04206 1.60280 1.21466 0.97215 0.81496 1.00449 1.21884 0.94882 0.98525 1.00735 1.21287 0.93818 0.95503 0.99443 0.91597 1.21138 0.95384 0.94362 1.00024 1.21916 1.00762 0.96541 1.01302 1.21860 0.96992 1.01752 0.99910 1.19587 0.94080 0.90030 0.99781 0.92207 0.90470 0.93002 0.92540 0.92339 0.91482 0.90955 0.91542 0.91406 0.92909 0.93172 0.92624 0.92903 0.91835 0.93329 0.91816 0.93359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.95 10.23 36.00 0.37 -0.58 16 2 C 0.16 3.83 7.91 -155.10 -1.23 2.60 16 3 N -0.46 -13.25 9.57 -8.38 -0.08 -13.33 16 4 C 0.20 5.94 6.67 -84.76 -0.57 5.38 16 5 C -0.45 -13.18 9.23 -37.90 -0.35 -13.53 16 6 H 0.07 2.03 7.85 -52.48 -0.41 1.61 16 7 C 0.08 2.16 5.49 -17.35 -0.10 2.06 16 8 N -0.77 -22.94 11.98 55.54 0.67 -22.27 16 9 Si 0.90 20.71 29.56 -169.99 -5.03 15.68 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 C -0.19 -4.79 6.69 -80.61 -0.54 -5.33 16 14 N -0.46 -10.32 3.14 -108.25 -0.34 -10.66 16 15 C 0.12 1.94 6.56 -3.87 -0.03 1.91 16 16 C -0.12 -1.78 5.10 -26.53 -0.14 -1.92 16 17 C -0.08 -1.28 1.80 -90.30 -0.16 -1.44 16 18 H 0.07 1.09 8.12 -51.93 -0.42 0.66 16 19 C -0.09 -1.15 2.49 -90.62 -0.23 -1.37 16 20 C -0.15 -1.56 8.87 37.16 0.33 -1.23 16 21 C -0.15 -1.83 8.87 37.16 0.33 -1.50 16 22 C 0.00 0.07 4.72 -27.67 -0.13 -0.06 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 25 H 0.05 0.79 7.92 -51.93 -0.41 0.38 16 26 H 0.26 7.21 8.30 -40.82 -0.34 6.87 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 0.84 5.98 -51.93 -0.31 0.53 16 30 H 0.07 1.03 8.11 -51.93 -0.42 0.61 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 34 H 0.05 0.55 6.24 -51.93 -0.32 0.22 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.85 6.72 -51.93 -0.35 0.51 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 1.30 7.14 -51.93 -0.37 0.93 16 39 H 0.05 0.96 8.11 -51.93 -0.42 0.54 16 LS Contribution 307.94 15.07 4.64 4.64 Total: -1.00 -33.08 307.94 -8.95 -42.03 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -6.38 Total: -1.08 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -2.43 Total: -15.00 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 0.25 Total: -46.26 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.08 -8.95 -42.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259822394.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.457 kcal (2) G-P(sol) polarization free energy of solvation -33.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds