Wall clock time and date at job start Mon Mar 30 2020 05:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30422 * 125.24997 * 2 1 4 4 C 1.36263 * 109.19891 * 180.02562 * 3 2 1 5 5 C 1.41222 * 126.56584 * 180.27830 * 4 3 2 6 6 H 1.08006 * 119.99649 * 173.87980 * 5 4 3 7 7 C 1.39711 * 120.00339 * 353.87860 * 5 4 3 8 8 N 1.31015 * 119.99956 * 5.97941 * 7 5 4 9 9 Si 1.86798 * 120.00208 * 185.97665 * 7 5 4 10 10 H 1.48508 * 109.46994 * 94.98079 * 9 7 5 11 11 H 1.48498 * 109.47574 * 214.98126 * 9 7 5 12 12 H 1.48503 * 109.47009 * 334.98519 * 9 7 5 13 13 C 1.38245 * 106.86450 * 0.02562 * 4 3 2 14 14 N 1.35461 * 125.25477 * 179.97438 * 2 1 3 15 15 C 1.46569 * 128.12819 * 359.86616 * 14 2 1 16 16 C 1.53262 * 108.72897 * 197.45078 * 15 14 2 17 17 C 1.53131 * 109.70521 * 309.17898 * 16 15 14 18 18 H 1.08999 * 109.50957 * 309.74123 * 17 16 15 19 19 C 1.52997 * 109.54861 * 189.62576 * 17 16 15 20 20 C 1.52999 * 109.47371 * 60.21952 * 19 17 16 21 21 C 1.53005 * 109.47260 * 180.21907 * 19 17 16 22 22 C 1.50610 * 128.69408 * 179.90499 * 13 4 3 23 23 H 1.09001 * 109.47617 * 270.02485 * 1 2 3 24 24 H 1.09002 * 109.47388 * 30.03553 * 1 2 3 25 25 H 1.09004 * 109.46658 * 150.02899 * 1 2 3 26 26 H 0.96993 * 120.00596 * 180.02562 * 8 7 5 27 27 H 1.08992 * 109.59062 * 77.67202 * 15 14 2 28 28 H 1.09003 * 109.71777 * 317.29631 * 15 14 2 29 29 H 1.09007 * 109.42607 * 189.11063 * 16 15 14 30 30 H 1.08997 * 109.39546 * 69.23028 * 16 15 14 31 31 H 1.09007 * 109.47034 * 300.21534 * 19 17 16 32 32 H 1.08995 * 109.47270 * 60.00186 * 20 19 17 33 33 H 1.09010 * 109.47199 * 180.02562 * 20 19 17 34 34 H 1.09001 * 109.46812 * 299.99420 * 20 19 17 35 35 H 1.08997 * 109.46792 * 300.00350 * 21 19 17 36 36 H 1.09000 * 109.46567 * 59.99681 * 21 19 17 37 37 H 1.08996 * 109.47266 * 179.97438 * 21 19 17 38 38 H 1.09003 * 109.74183 * 315.26809 * 22 13 4 39 39 H 1.09004 * 109.73814 * 75.97080 * 22 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2597 1.0651 0.0000 4 6 3.5692 0.6883 -0.0006 5 6 4.6913 1.5457 0.0047 6 1 5.6849 1.1341 0.1034 7 6 4.5162 2.9264 -0.1176 8 7 3.3092 3.4360 -0.1195 9 14 6.0028 4.0459 -0.2786 10 1 6.2707 4.3095 -1.7154 11 1 5.7340 5.3293 0.4183 12 1 7.1858 3.3888 0.3330 13 6 3.5888 -0.6940 -0.0015 14 7 2.2888 -1.1062 0.0005 15 6 1.8697 -2.5106 0.0038 16 6 3.0566 -3.3774 0.4384 17 6 4.2897 -3.0203 -0.3964 18 1 4.0288 -3.0318 -1.4546 19 6 5.3993 -4.0401 -0.1327 20 6 4.9122 -5.4366 -0.5243 21 6 6.6323 -3.6785 -0.9633 22 6 4.7775 -1.6188 -0.0044 23 1 -0.3634 0.0004 1.0276 24 1 -0.3634 0.8897 -0.5144 25 1 -0.3633 -0.8903 -0.5134 26 1 3.1875 4.3945 -0.2048 27 1 1.5532 -2.7999 -0.9982 28 1 1.0433 -2.6461 0.7016 29 1 2.8108 -4.4291 0.2907 30 1 3.2683 -3.1990 1.4926 31 1 5.6586 -4.0293 0.9261 32 1 4.6530 -5.4474 -1.5829 33 1 5.7026 -6.1633 -0.3359 34 1 4.0339 -5.6942 0.0676 35 1 6.3730 -3.6892 -2.0220 36 1 6.9793 -2.6836 -0.6843 37 1 7.4230 -4.4048 -0.7751 38 1 5.5143 -1.2691 -0.7276 39 1 5.2227 -1.6491 0.9901 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259822394.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:42 Heat of formation + Delta-G solvation = 8.131145 kcal Electronic energy + Delta-G solvation = -18659.870525 eV Core-core repulsion = 15987.231771 eV Total energy + Delta-G solvation = -2672.638754 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.20471 -38.80980 -35.67671 -34.54656 -33.04758 -30.91621 -30.39710 -28.80594 -27.88597 -25.55555 -24.36871 -22.74197 -21.18485 -20.63459 -19.43959 -18.73252 -16.75573 -16.42038 -16.28011 -15.61692 -15.32011 -14.95308 -14.73275 -14.49368 -14.26641 -13.98771 -13.52207 -13.35533 -13.09343 -12.98199 -12.87610 -12.82108 -12.70286 -12.34800 -12.31463 -12.14511 -11.91656 -11.77860 -11.43315 -11.15474 -11.10662 -11.00015 -9.85206 -9.65659 -8.65390 -8.17657 -5.98932 1.34470 1.39456 1.53826 1.74308 2.34307 2.54381 2.67846 3.66897 3.75195 3.80366 3.90755 4.12070 4.17899 4.21209 4.44068 4.46643 4.53464 4.63558 4.66819 4.75029 4.84114 4.86105 4.93362 4.99344 5.05192 5.08462 5.11494 5.13568 5.16083 5.29670 5.34745 5.42500 5.55185 5.60812 5.64863 6.00712 6.19811 6.48388 7.02355 7.22280 7.39747 8.20228 8.79360 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.020182 B = 0.007836 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.023853 B = 3572.227763 C = 4863.244229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C 0.144 3.856 3 N -0.514 5.514 4 C 0.142 3.858 5 C -0.488 4.488 6 H 0.070 0.930 7 C 0.023 3.977 8 N -0.821 5.821 9 Si 0.976 3.024 10 H -0.269 1.269 11 H -0.274 1.274 12 H -0.258 1.258 13 C -0.184 4.184 14 N -0.460 5.460 15 C 0.105 3.895 16 C -0.117 4.117 17 C -0.073 4.073 18 H 0.059 0.941 19 C -0.085 4.085 20 C -0.143 4.143 21 C -0.149 4.149 22 C 0.004 3.996 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.266 0.734 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.115 0.885 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.042 0.958 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.118 -16.660 -0.463 16.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.117 4.117 3 N -0.238 5.238 4 C 0.018 3.982 5 C -0.524 4.524 6 H 0.089 0.911 7 C -0.190 4.190 8 N -0.449 5.449 9 Si 0.798 3.202 10 H -0.194 1.194 11 H -0.199 1.199 12 H -0.182 1.182 13 C -0.293 4.293 14 N -0.150 5.150 15 C -0.017 4.017 16 C -0.155 4.155 17 C -0.092 4.092 18 H 0.077 0.923 19 C -0.104 4.104 20 C -0.200 4.200 21 C -0.206 4.206 22 C -0.034 4.034 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.108 0.892 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.133 0.867 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.600 -15.830 -0.468 15.848 hybrid contribution 0.837 0.474 -0.078 0.965 sum 0.237 -15.355 -0.546 15.367 Atomic orbital electron populations 1.20005 0.83982 1.03363 1.02956 1.24119 0.96794 0.82202 1.08613 1.71231 1.02990 1.26877 1.22735 1.18548 0.90861 0.89861 0.98941 1.18723 0.92102 0.91487 1.50095 0.91141 1.26650 0.99214 0.99965 0.93161 1.70263 1.23733 1.12338 1.38569 0.85314 0.78686 0.77466 0.78774 1.19432 1.19903 1.18207 1.21301 0.85925 0.94344 1.27751 1.44866 1.05469 1.06492 1.58207 1.21991 0.98976 0.78095 1.02644 1.21920 0.93321 1.00489 0.99730 1.21212 0.95535 0.93307 0.99134 0.92252 1.21093 0.94224 0.94946 1.00130 1.21873 1.01713 0.94802 1.01604 1.21869 0.97684 1.01238 0.99849 1.19655 0.92175 0.92247 0.99372 0.90451 0.91222 0.89175 0.92472 0.90247 0.88671 0.86660 0.92378 0.91344 0.92682 0.91687 0.91417 0.92956 0.93869 0.91308 0.93093 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.57 10.23 71.23 0.73 -0.84 16 2 C 0.14 6.99 7.91 138.02 1.09 8.08 16 3 N -0.51 -31.21 9.57 -180.43 -1.73 -32.93 16 4 C 0.14 8.66 6.67 39.19 0.26 8.93 16 5 C -0.49 -30.13 9.23 23.36 0.22 -29.91 16 6 H 0.07 4.14 7.85 -2.91 -0.02 4.12 16 7 C 0.02 1.36 5.49 85.17 0.47 1.82 16 8 N -0.82 -51.25 11.98 21.79 0.26 -50.99 16 9 Si 0.98 44.44 29.56 68.60 2.03 46.47 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 13 C -0.18 -9.26 6.69 41.83 0.28 -8.98 16 14 N -0.46 -20.09 3.14 -496.39 -1.56 -21.64 16 15 C 0.10 3.07 6.56 86.45 0.57 3.63 16 16 C -0.12 -2.98 5.10 30.73 0.16 -2.82 16 17 C -0.07 -2.13 1.80 -10.59 -0.02 -2.15 16 18 H 0.06 1.82 8.12 -2.39 -0.02 1.80 16 19 C -0.09 -1.93 2.49 -10.79 -0.03 -1.95 16 20 C -0.14 -2.37 8.87 71.98 0.64 -1.74 16 21 C -0.15 -3.43 8.87 71.98 0.64 -2.79 16 22 C 0.00 0.16 4.72 29.98 0.14 0.30 16 23 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 24 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 25 H 0.09 2.43 7.92 -2.38 -0.02 2.41 16 26 H 0.27 15.26 8.30 -92.71 -0.77 14.49 16 27 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.12 2.02 5.98 -2.38 -0.01 2.00 16 30 H 0.06 1.61 8.11 -2.39 -0.02 1.59 16 31 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.07 0.97 6.24 -2.39 -0.01 0.95 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.04 1.15 6.72 -2.39 -0.02 1.13 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.05 2.16 7.14 -2.39 -0.02 2.14 16 39 H 0.05 1.85 8.11 -2.39 -0.02 1.83 16 Total: -1.00 -78.01 307.94 5.16 -72.85 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 1.01 Total: 14.66 kcal Atomic # 6 Polarization: -33.55 SS G_CDS: 5.14 Total: -28.41 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -3.02 Total: -105.57 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -78.01 5.16 -72.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259822394.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.977 kcal (2) G-P(sol) polarization free energy of solvation -78.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds